| 53 |
0.0007581 |
0.04961 |
b1302 |
puuE |
-16.93 |
0.000076 |
166 -- 207 |
20 -- 57 |
4-aminobutyrate aminotransferase PLP-dependent |
b2662 |
_____________165_________________________________________208\n_____________|___________________________________________|\n5'-AGC...UAAUU________AC_______AGUC_______G_____C________ACAAU...CGC-3'\n______________UCCGAUUA__CGUGAAG____AAAAGGU_UGAAA_AU_GAGCA\n______________||||||||__|||||||____|||||||_|||||_||_||:||\n______________AGGCUAAU__GCACUUC____UUUUCCA_ACUUU_UA_CUUGU\n3'-AUU...GGUUU_________________A__________G_____C__U_____AGAAU...AUG-5'\n_____________|___________________________________________|\n_____________58__________________________________________19\n |
176 -- 182 |
43 -- 49 |
-36.956 kcal/mol |
7.85943 kcal/mol |
12.1551 kcal/mol |
165 208@LB@ | |@LB@5'-AGC...UAAUU AC AGUC G C ACAAU...CGC-3'@LB@ UCCGAUUA CGUGAAG AAAAGGU UGAAA AU GAGCA@LB@ |||||||| ||||||| ||||||| ||||| || ||:||@LB@ AGGCUAAU GCACUUC UUUUCCA ACUUU UA CUUGU@LB@3'-AUU...GGUUU A G C U AGAAU...AUG-5'@LB@ | |@LB@ 58 19@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -36.956 kcal/mol@LB@Unfolding Energy - mRNA 7.85943 kcal/mol@LB@Unfolding Energy - sRNA 12.1551 kcal/mol@LB@@LB@Position - mRNA 166 -- 207@LB@Position - sRNA 20 -- 57@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 41 |
0.000458 |
0.03766 |
b3679 |
yidK |
-16.91 |
0.000078 |
119 -- 159 |
1 -- 60 |
putative transporter |
|
_____________118__________________________________________________________160\n_____________|____________________________________________________________|\n5'-UUU...UUUAA________C_____________________CCCGAC________________________AUUCA...AAG-3'\n______________GAAUCUGA_UGC______________CUGA________GCAUUUUACCUCU___CCCUAU\n______________:||||:||_|:|______________||||________:|||:||||||||___|||||:\n______________UUUAGGCU_AUG______________GACU________UGUAGAAUGGAGA___GGGAUG\n3'-AUU...GUCGG________A___CACUUCAUUUUCCA____UUCUAUCU_____________CAU______-5'\n_____________|___________________________________________________________|\n_____________61__________________________________________________________1\n |
147 -- 153 |
10 -- 16 |
-34.139 kcal/mol |
4.55251 kcal/mol |
12.7042 kcal/mol |
118 160@LB@ | |@LB@5'-UUU...UUUAA C CCCGAC AUUCA...AAG-3'@LB@ GAAUCUGA UGC CUGA GCAUUUUACCUCU CCCUAU@LB@ :||||:|| |:| |||| :|||:|||||||| |||||:@LB@ UUUAGGCU AUG GACU UGUAGAAUGGAGA GGGAUG@LB@3'-AUU...GUCGG A CACUUCAUUUUCCA UUCUAUCU CAU -5'@LB@ | |@LB@ 61 1@LB@@LB@@LB@Energy -16.91 kcal/mol@LB@Hybridization Energy -34.139 kcal/mol@LB@Unfolding Energy - mRNA 4.55251 kcal/mol@LB@Unfolding Energy - sRNA 12.7042 kcal/mol@LB@@LB@Position - mRNA 119 -- 159@LB@Position - sRNA 1 -- 60@LB@Position Seed - mRNA 147 -- 153@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 10 |
2.605e-05 |
0.009165 |
b3599 |
mtlA |
-16.58 |
0.000118 |
1 -- 31 |
4 -- 28 |
mannitol-specific PTS enzyme: IIA IIB and IIC components |
|
______________1_______________________________32\n______________|_______________________________|\n___________5'-___________ACGUCAA________C_____CCUAU...UCA-3'\n______________GAU_GAACGUC_______UUACCUCU_UACCC\n______________|||_||||:||_______||||||||_|||||\n______________CUA_CUUGUAG_______AAUGGAGA_AUGGG\n3'-AUU...ACUUU___U______________________C_____AUG-5'\n_____________|________________________________|\n_____________29_______________________________3\n |
19 -- 25 |
10 -- 16 |
-27.7982 kcal/mol |
3.19385 kcal/mol |
8.04825 kcal/mol |
1 32@LB@ | |@LB@ 5'- ACGUCAA C CCUAU...UCA-3'@LB@ GAU GAACGUC UUACCUCU UACCC@LB@ ||| ||||:|| |||||||| |||||@LB@ CUA CUUGUAG AAUGGAGA AUGGG@LB@3'-AUU...ACUUU U C AUG-5'@LB@ | |@LB@ 29 3@LB@@LB@@LB@Energy -16.58 kcal/mol@LB@Hybridization Energy -27.7982 kcal/mol@LB@Unfolding Energy - mRNA 3.19385 kcal/mol@LB@Unfolding Energy - sRNA 8.04825 kcal/mol@LB@@LB@Position - mRNA 1 -- 31@LB@Position - sRNA 4 -- 28@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 51 |
0.0006491 |
0.04477 |
b3224 |
nanT |
-16.25 |
0.000177 |
140 -- 151 |
1 -- 12 |
sialic acid transporter |
b4279 |
_____________139__________152\n_____________|____________|\n5'-CGC...ACGCA____________AAUUU...GUU-3'\n______________UCUGUACCCUAC\n______________||||||||||||\n______________AGACAUGGGAUG\n3'-AUU...AAUGG____________-5'\n_____________|___________|\n_____________13__________1\n |
145 -- 151 |
1 -- 7 |
-21.6524 kcal/mol |
1.93745 kcal/mol |
3.49051 kcal/mol |
139 152@LB@ | |@LB@5'-CGC...ACGCA AAUUU...GUU-3'@LB@ UCUGUACCCUAC@LB@ ||||||||||||@LB@ AGACAUGGGAUG@LB@3'-AUU...AAUGG -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -16.25 kcal/mol@LB@Hybridization Energy -21.6524 kcal/mol@LB@Unfolding Energy - mRNA 1.93745 kcal/mol@LB@Unfolding Energy - sRNA 3.49051 kcal/mol@LB@@LB@Position - mRNA 140 -- 151@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 8 |
1.842e-05 |
0.007771 |
b2797 |
sdaB |
-15.07 |
0.000654 |
133 -- 147 |
55 -- 69 |
L-serine dehydratase 2 |
|
_____________132_____________148\n_____________|_______________|\n5'-CGA...CUCUC_______________UUUCG...UGA-3'\n______________UGUUCAGCUAAGUCC\n______________|:||||||:||:|||\n______________AUAAGUCGGUUUAGG\n3'-AUU...AUUUU_______________CUAAU...AUG-5'\n_____________|_______________|\n_____________70______________54\n |
141 -- 147 |
55 -- 61 |
-22.3059 kcal/mol |
1.18067 kcal/mol |
6.0797 kcal/mol |
132 148@LB@ | |@LB@5'-CGA...CUCUC UUUCG...UGA-3'@LB@ UGUUCAGCUAAGUCC@LB@ |:||||||:||:|||@LB@ AUAAGUCGGUUUAGG@LB@3'-AUU...AUUUU CUAAU...AUG-5'@LB@ | |@LB@ 70 54@LB@@LB@@LB@Energy -15.07 kcal/mol@LB@Hybridization Energy -22.3059 kcal/mol@LB@Unfolding Energy - mRNA 1.18067 kcal/mol@LB@Unfolding Energy - sRNA 6.0797 kcal/mol@LB@@LB@Position - mRNA 133 -- 147@LB@Position - sRNA 55 -- 69@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 1 |
0 |
0 |
b0757 |
galK |
-15.06 |
0.000658 |
183 -- 231 |
8 -- 60 |
galactokinase |
|
_____________182_____________________________________________________232\n_____________|_______________________________________________________|\n5'-CAU...UUCGC_______GA______U___AAAU_____________AAA____CA__________UUGCC...GUG-3'\n______________GAAUCCG_____GUG_AAG____GAG_UCUGAAAGA___AACA____AUCUCUGU\n______________:||||||_____|||_|||____:||_|||||||||___||||____|:||||||\n______________UUUAGGC_____CAC_UUC____UUC_AGACUUUCU___UUGU____UGGAGACA\n3'-AUU...GUCGG_______UAAUG_______AUU____C_________AUC____AGAA________UGGGAUG-5'\n_____________|_______________________________________________________|\n_____________61______________________________________________________7\n |
225 -- 231 |
8 -- 14 |
-35.0906 kcal/mol |
7.3474 kcal/mol |
12.6967 kcal/mol |
182 232@LB@ | |@LB@5'-CAU...UUCGC GA U AAAU AAA CA UUGCC...GUG-3'@LB@ GAAUCCG GUG AAG GAG UCUGAAAGA AACA AUCUCUGU@LB@ :|||||| ||| ||| :|| ||||||||| |||| |:||||||@LB@ UUUAGGC CAC UUC UUC AGACUUUCU UUGU UGGAGACA@LB@3'-AUU...GUCGG UAAUG AUU C AUC AGAA UGGGAUG-5'@LB@ | |@LB@ 61 7@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -35.0906 kcal/mol@LB@Unfolding Energy - mRNA 7.3474 kcal/mol@LB@Unfolding Energy - sRNA 12.6967 kcal/mol@LB@@LB@Position - mRNA 183 -- 231@LB@Position - sRNA 8 -- 60@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 126 |
0.00422 |
0.1178 |
b1621 |
malX |
-14.96 |
0.000732 |
43 -- 87 |
1 -- 56 |
maltose and glucose-specific PTS enzyme IIB component and IIC component |
|
_____________42__________________________________________________________88\n_____________|___________________________________________________________|\n5'-AUG...ACUCC____________C___________________A______________UAUU________ACCCG...GCA-3'\n______________CUGAUUAUGUGA_______________AGAUA_AACGUUUUACCUUU____UAUCUUAU\n______________|:|||||:||||_______________|||||_|||:|:||||||:|____||:|:||:\n______________GGCUAAUGCACU_______________UCUAU_UUGUAGAAUGGAGA____AUGGGAUG\n3'-AUU...GUUUA____________UCAUUUUCCAGACUU_____C______________C___________-5'\n_____________|__________________________________________________________|\n_____________57_________________________________________________________1\n |
81 -- 87 |
1 -- 7 |
-37.7188 kcal/mol |
10.08 kcal/mol |
12.7022 kcal/mol |
42 88@LB@ | |@LB@5'-AUG...ACUCC C A UAUU ACCCG...GCA-3'@LB@ CUGAUUAUGUGA AGAUA AACGUUUUACCUUU UAUCUUAU@LB@ |:|||||:|||| ||||| |||:|:||||||:| ||:|:||:@LB@ GGCUAAUGCACU UCUAU UUGUAGAAUGGAGA AUGGGAUG@LB@3'-AUU...GUUUA UCAUUUUCCAGACUU C C -5'@LB@ | |@LB@ 57 1@LB@@LB@@LB@Energy -14.96 kcal/mol@LB@Hybridization Energy -37.7188 kcal/mol@LB@Unfolding Energy - mRNA 10.08 kcal/mol@LB@Unfolding Energy - sRNA 12.7022 kcal/mol@LB@@LB@Position - mRNA 43 -- 87@LB@Position - sRNA 1 -- 56@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 4 |
8.02e-06 |
0.007054 |
b0425 |
panE |
-14.83 |
0.000836 |
22 -- 49 |
1 -- 32 |
2-dehydropantoate reductase NADPH-specific |
|
_____________21________________________________50\n_____________|_________________________________|\n5'-AUC...AUAUC_________________UU____________U_AUUUU...CGC-3'\n______________GAAAGAUGG__CAUCUU__CCUCU___CCCU_C\n______________|||||||:|__||||||__|||||___||||_|\n______________CUUUCUAUC__GUAGAA__GGAGA___GGGA_G\n3'-AUU...CCAGA_________UU______U______CAU____U_-5'\n_____________|________________________________|\n_____________33_______________________________1\n |
24 -- 30 |
24 -- 30 |
-28.6113 kcal/mol |
4.98037 kcal/mol |
8.82471 kcal/mol |
21 50@LB@ | |@LB@5'-AUC...AUAUC UU U AUUUU...CGC-3'@LB@ GAAAGAUGG CAUCUU CCUCU CCCU C@LB@ |||||||:| |||||| ||||| |||| |@LB@ CUUUCUAUC GUAGAA GGAGA GGGA G@LB@3'-AUU...CCAGA UU U CAU U -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -28.6113 kcal/mol@LB@Unfolding Energy - mRNA 4.98037 kcal/mol@LB@Unfolding Energy - sRNA 8.82471 kcal/mol@LB@@LB@Position - mRNA 22 -- 49@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 24 -- 30@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 25 |
0.0002052 |
0.02687 |
b0885 |
aat |
-14.70 |
0.000956 |
173 -- 191 |
42 -- 59 |
leucyl/phenylalanyl-tRNA-protein transferase |
|
_____________172_________________192\n_____________|___________________|\n5'-CGU...UGAAC_______C___________UUUGC...UUA-3'\n______________GAUCCGA_UUGCGUGGAGU\n______________:||||||_||:||||:|||\n______________UUAGGCU_AAUGCACUUCA\n3'-AUU...UCGGU___________________UUUUC...AUG-5'\n_____________|___________________|\n_____________60__________________41\n |
185 -- 191 |
42 -- 48 |
-23.9715 kcal/mol |
6.00825 kcal/mol |
3.27976 kcal/mol |
172 192@LB@ | |@LB@5'-CGU...UGAAC C UUUGC...UUA-3'@LB@ GAUCCGA UUGCGUGGAGU@LB@ :|||||| ||:||||:|||@LB@ UUAGGCU AAUGCACUUCA@LB@3'-AUU...UCGGU UUUUC...AUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -14.70 kcal/mol@LB@Hybridization Energy -23.9715 kcal/mol@LB@Unfolding Energy - mRNA 6.00825 kcal/mol@LB@Unfolding Energy - sRNA 3.27976 kcal/mol@LB@@LB@Position - mRNA 173 -- 191@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 37 |
0.0003769 |
0.03584 |
b1212 |
prmC |
-14.52 |
0.001141 |
215 -- 228 |
43 -- 56 |
RF-1 and RF-2 N5-glutamine methyltransferase |
|
_____________214____________229\n_____________|______________|\n5'-CGU...CAACA______________CAAUA...GCA-3'\n______________CUGGUUACGUGAAG\n______________|:|:||||||||||\n______________GGCUAAUGCACUUC\n3'-AUU...GUUUA______________AUUUU...AUG-5'\n_____________|______________|\n_____________57_____________42\n |
222 -- 228 |
43 -- 49 |
-20.863 kcal/mol |
3.08488 kcal/mol |
3.27327 kcal/mol |
214 229@LB@ | |@LB@5'-CGU...CAACA CAAUA...GCA-3'@LB@ CUGGUUACGUGAAG@LB@ |:|:||||||||||@LB@ GGCUAAUGCACUUC@LB@3'-AUU...GUUUA AUUUU...AUG-5'@LB@ | |@LB@ 57 42@LB@@LB@@LB@Energy -14.52 kcal/mol@LB@Hybridization Energy -20.863 kcal/mol@LB@Unfolding Energy - mRNA 3.08488 kcal/mol@LB@Unfolding Energy - sRNA 3.27327 kcal/mol@LB@@LB@Position - mRNA 215 -- 228@LB@Position - sRNA 43 -- 56@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 43 -- 49@LB@ |
