| 123 |
0.01344 |
0.3575 |
b2615 |
nadK |
-10.03 |
0.271821 |
99 -- 122 |
57 -- 77 |
NAD kinase |
|
_____________98____________123\n_____________|_____________|\n5'-CUC...CCCAC________AC___ACUGA...AAG-3'\n______________GGCACCCC__UGC\n______________||||||||__|||\n______________CCGUGGGG__ACG\n3'-UUU...GUACC________GA___AAGUAG-5'\n_____________|_____________|\n_____________78____________56\n |
245 -- 251 |
12 -- 18 |
-21.986 kcal/mol |
5.26387 kcal/mol |
8.16826 kcal/mol |
98 123@LB@ | |@LB@5'-CUC...CCCAC AC ACUGA...AAG-3'@LB@ GGCACCCC UGC@LB@ |||||||| |||@LB@ CCGUGGGG ACG@LB@3'-UUU...GUACC GA AAGUAG-5'@LB@ | |@LB@ 78 56@LB@@LB@@LB@Energy -10.03 kcal/mol@LB@Hybridization Energy -21.986 kcal/mol@LB@Unfolding Energy - mRNA 5.26387 kcal/mol@LB@Unfolding Energy - sRNA 8.16826 kcal/mol@LB@@LB@Position - mRNA 99 -- 122@LB@Position - sRNA 57 -- 77@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 12 -- 18@LB@ |
| 67 |
0.006568 |
0.3261 |
b1927 |
amyA |
-8.95 |
0.423898 |
77 -- 95 |
58 -- 76 |
cytoplasmic alpha-amylase |
|
_____________76_____________________96\n_____________|______________________|\n5'-UUA...GAAAC__G_______GU___C______AAAAU...AUA-3'\n______________UG_UCGGUCA__CAU_GGUGCA\n______________|:_||:||||__|||_|:||||\n______________AU_AGUCAGU__GUA_CUACGU\n3'-UUU...UGGUU__G_______GU__________CCGUU...UAG-5'\n_____________|______________________|\n_____________77_____________________57\n |
35 -- 41 |
171 -- 177 |
-21.7732 kcal/mol |
10.1812 kcal/mol |
4.80336 kcal/mol |
76 96@LB@ | |@LB@5'-UUA...GAAAC G GU C AAAAU...AUA-3'@LB@ UG UCGGUCA CAU GGUGCA@LB@ |: ||:|||| ||| |:||||@LB@ AU AGUCAGU GUA CUACGU@LB@3'-UUU...UGGUU G GU CCGUU...UAG-5'@LB@ | |@LB@ 77 57@LB@@LB@@LB@Energy -8.95 kcal/mol@LB@Hybridization Energy -21.7732 kcal/mol@LB@Unfolding Energy - mRNA 10.1812 kcal/mol@LB@Unfolding Energy - sRNA 4.80336 kcal/mol@LB@@LB@Position - mRNA 77 -- 95@LB@Position - sRNA 58 -- 76@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 171 -- 177@LB@ |
| 176 |
0.01994 |
0.3812 |
b2170 |
setB |
-11.80 |
0.122017 |
181 -- 237 |
58 -- 116 |
lactose/glucose efflux system |
|
_____________180____________238\n_____________|______________|\n5'-GCU...GAUCG______________AACUC...UGC-3'\n______________AC_CAG_CAUGCAU\n______________||_|||_||::|||\n______________UG_GUC_GUGUGUA\n3'-UUU...GGUUA__A___A_______CUACG...UAG-5'\n_____________|______________|\n_____________117____________57\n |
200 -- 206 |
166 -- 172 |
-10.2756 kcal/mol |
1.89616 kcal/mol |
0.604817 kcal/mol |
180 238@LB@ | |@LB@5'-GCU...GAUCG AACUC...UGC-3'@LB@ AC CAG CAUGCAU@LB@ || ||| ||::|||@LB@ UG GUC GUGUGUA@LB@3'-UUU...GGUUA A A CUACG...UAG-5'@LB@ | |@LB@ 117 57@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -10.2756 kcal/mol@LB@Unfolding Energy - mRNA 1.89616 kcal/mol@LB@Unfolding Energy - sRNA 0.604817 kcal/mol@LB@@LB@Position - mRNA 181 -- 237@LB@Position - sRNA 58 -- 116@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 166 -- 172@LB@ |
| 178 |
0.02044 |
0.3833 |
b3433 |
asd |
-8.72 |
0.462346 |
170 -- 185 |
58 -- 71 |
aspartate-semialdehyde dehydrogenase NAD(P)-binding |
|
_____________169__________________186\n_____________|____________________|\n5'-UCA...UUAUA___________CUU______AAAAA...UCU-3'\n______________CAG_CACACAU___UGCAGG\n______________|||_|||||||___||||||\n______________GUC_GUGUGUA___ACGUCC\n3'-UUU...UAUGA___A_______CU_______GUUCA...UAG-5'\n_____________|____________________|\n_____________72___________________57\n |
173 -- 179 |
166 -- 172 |
-22.5694 kcal/mol |
4.04779 kcal/mol |
7.34152 kcal/mol |
169 186@LB@ | |@LB@5'-UCA...UUAUA CUU AAAAA...UCU-3'@LB@ CAG CACACAU UGCAGG@LB@ ||| ||||||| ||||||@LB@ GUC GUGUGUA ACGUCC@LB@3'-UUU...UAUGA A CU GUUCA...UAG-5'@LB@ | |@LB@ 72 57@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -22.5694 kcal/mol@LB@Unfolding Energy - mRNA 4.04779 kcal/mol@LB@Unfolding Energy - sRNA 7.34152 kcal/mol@LB@@LB@Position - mRNA 170 -- 185@LB@Position - sRNA 58 -- 71@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 166 -- 172@LB@ |
| 179 |
0.02059 |
0.3833 |
b2535 |
csiE |
-10.55 |
0.216292 |
103 -- 142 |
58 -- 90 |
stationary phase inducible protein |
|
_____________102___________143\n_____________|_____________|\n5'-GCA...GAUUA__________C__CAUUU...UGG-3'\n______________GCAUUCCCUU_GC\n______________|||::|||||_||\n______________CGUGGGGGAA_CG\n3'-UUU...UACCC_____________AAGUAG-5'\n_____________|_____________|\n_____________91____________57\n |
133 -- 139 |
9 -- 15 |
-16.9052 kcal/mol |
2.85301 kcal/mol |
6.64496 kcal/mol |
102 143@LB@ | |@LB@5'-GCA...GAUUA C CAUUU...UGG-3'@LB@ GCAUUCCCUU GC@LB@ |||::||||| ||@LB@ CGUGGGGGAA CG@LB@3'-UUU...UACCC AAGUAG-5'@LB@ | |@LB@ 91 57@LB@@LB@@LB@Energy -10.55 kcal/mol@LB@Hybridization Energy -16.9052 kcal/mol@LB@Unfolding Energy - mRNA 2.85301 kcal/mol@LB@Unfolding Energy - sRNA 6.64496 kcal/mol@LB@@LB@Position - mRNA 103 -- 142@LB@Position - sRNA 58 -- 90@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 9 -- 15@LB@ |
| 94 |
0.01043 |
0.3575 |
b4293 |
fecI |
-12.90 |
0.072974 |
203 -- 229 |
60 -- 87 |
RNA polymerase sigma-19 factor fec operon-specific; ECF sigma factor |
|
_____________202_______________________230\n_____________|_________________________|\n5'-AAU...AUCCC__________UAC_____UA_____UUAGA...AGU-3'\n______________AUUUUAUACC____CUUA___ACAC\n______________||||||:|||____||:|___||||\n______________UAAAAUGUGG____GAGU___UGUG\n3'-UUU...CCCAC__________UUAU____CAG____UACUA...UAG-5'\n_____________|_________________________|\n_____________88________________________59\n |
66 -- 72 |
183 -- 189 |
-15.6606 kcal/mol |
1.17775 kcal/mol |
4.92862 kcal/mol |
202 230@LB@ | |@LB@5'-AAU...AUCCC UAC UA UUAGA...AGU-3'@LB@ AUUUUAUACC CUUA ACAC@LB@ ||||||:||| ||:| ||||@LB@ UAAAAUGUGG GAGU UGUG@LB@3'-UUU...CCCAC UUAU CAG UACUA...UAG-5'@LB@ | |@LB@ 88 59@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -15.6606 kcal/mol@LB@Unfolding Energy - mRNA 1.17775 kcal/mol@LB@Unfolding Energy - sRNA 4.92862 kcal/mol@LB@@LB@Position - mRNA 203 -- 229@LB@Position - sRNA 60 -- 87@LB@Position Seed - mRNA 66 -- 72@LB@Position Seed - sRNA 183 -- 189@LB@ |
| 5 |
0.0001254 |
0.08442 |
b4481 |
wecF |
-11.27 |
0.155862 |
165 -- 206 |
62 -- 99 |
TDP-Fuc4NAc:lipidIIFuc4NAc transferase |
|
_____________164_____________________________________207\n_____________|_______________________________________|\n5'-UUU...GCGUC___G_____U_____UC__GC___________CAG____CUUUA...ACG-3'\n______________ACU_CGGUU_UAUAU__UG__GG_AAGUCAGC___UUCA\n______________|||_|:||:_:|:||__||__||_||||||:|___||||\n______________UGA_GUCAG_GUGUA__AC__CC_UUCAGUUG___AAGU\n3'-UUU...GGUUA_________U_____CU__GU__G________A______CUUAA...UAG-5'\n_____________|_______________________________________|\n_____________100_____________________________________61\n |
54 -- 60 |
149 -- 155 |
-25.8626 kcal/mol |
10.7241 kcal/mol |
8.38318 kcal/mol |
164 207@LB@ | |@LB@5'-UUU...GCGUC G U UC GC CAG CUUUA...ACG-3'@LB@ ACU CGGUU UAUAU UG GG AAGUCAGC UUCA@LB@ ||| |:||: :|:|| || || ||||||:| ||||@LB@ UGA GUCAG GUGUA AC CC UUCAGUUG AAGU@LB@3'-UUU...GGUUA U CU GU G A CUUAA...UAG-5'@LB@ | |@LB@ 100 61@LB@@LB@@LB@Energy -11.27 kcal/mol@LB@Hybridization Energy -25.8626 kcal/mol@LB@Unfolding Energy - mRNA 10.7241 kcal/mol@LB@Unfolding Energy - sRNA 8.38318 kcal/mol@LB@@LB@Position - mRNA 165 -- 206@LB@Position - sRNA 62 -- 99@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 149 -- 155@LB@ |
| 24 |
0.001922 |
0.2633 |
b3017 |
ftsP |
-19.79 |
0.002953 |
203 -- 291 |
63 -- 135 |
septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts) |
|
_____________202__________________________________________________________________________________________292\n_____________|____________________________________________________________________________________________|\n5'-GAC...AAUAU_________GUCG__________A_________C__G______CACU_____CA______GUUCCCCUGAAG____________________AGCAA...CGC-3'\n______________GUCA_CUCA____GCGUCAGUUC_UUCAGGCAU_GG__GAUUG____UUGUG__GGCGCU____________GCCAGCGCAGCCGG_GCAAC\n______________||||_|:||____||:|||||:|_||||:||||_||__:||:|____|||||__|:||||____________:|||:||||:||:|_:||||\n______________CAGU_GGGU____CGUAGUCAGG_AAGUUCGUA_CC__UUAGC____AACAC__CUGCGA____________UGGUUGCGUUGGUC_UGUUG\n3'-UUU...AACGC____A____GA_________________________AA______________C_______AU________________________G_____AAGCG...UAG-5'\n_____________|____________________________________________________________________________________________|\n_____________136__________________________________________________________________________________________62\n |
278 -- 284 |
71 -- 77 |
-82.7619 kcal/mol |
32.3928 kcal/mol |
37.2191 kcal/mol |
202 292@LB@ | |@LB@5'-GAC...AAUAU GUCG A C G CACU CA GUUCCCCUGAAG AGCAA...CGC-3'@LB@ GUCA CUCA GCGUCAGUUC UUCAGGCAU GG GAUUG UUGUG GGCGCU GCCAGCGCAGCCGG GCAAC@LB@ |||| |:|| ||:|||||:| ||||:|||| || :||:| ||||| |:|||| :|||:||||:||:| :||||@LB@ CAGU GGGU CGUAGUCAGG AAGUUCGUA CC UUAGC AACAC CUGCGA UGGUUGCGUUGGUC UGUUG@LB@3'-UUU...AACGC A GA AA C AU G AAGCG...UAG-5'@LB@ | |@LB@ 136 62@LB@@LB@@LB@Energy -19.79 kcal/mol@LB@Hybridization Energy -82.7619 kcal/mol@LB@Unfolding Energy - mRNA 32.3928 kcal/mol@LB@Unfolding Energy - sRNA 37.2191 kcal/mol@LB@@LB@Position - mRNA 203 -- 291@LB@Position - sRNA 63 -- 135@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 71 -- 77@LB@ |
| 45 |
0.003942 |
0.2948 |
b0686 |
ybfF |
-11.97 |
0.113030 |
234 -- 245 |
63 -- 74 |
acyl-CoA esterase |
|
_____________233__________246\n_____________|____________|\n5'-CUU...CACAA____________AAUUC...GCG-3'\n______________AACCAGCACAAU\n______________|||||||||||:\n______________UUGGUCGUGUUG\n3'-UUU...UUGCG____________AAGCG...UAG-5'\n_____________|____________|\n_____________75___________62\n |
239 -- 245 |
63 -- 69 |
-18.9732 kcal/mol |
1.15073 kcal/mol |
9.24135 kcal/mol |
233 246@LB@ | |@LB@5'-CUU...CACAA AAUUC...GCG-3'@LB@ AACCAGCACAAU@LB@ |||||||||||:@LB@ UUGGUCGUGUUG@LB@3'-UUU...UUGCG AAGCG...UAG-5'@LB@ | |@LB@ 75 62@LB@@LB@@LB@Energy -11.97 kcal/mol@LB@Hybridization Energy -18.9732 kcal/mol@LB@Unfolding Energy - mRNA 1.15073 kcal/mol@LB@Unfolding Energy - sRNA 9.24135 kcal/mol@LB@@LB@Position - mRNA 234 -- 245@LB@Position - sRNA 63 -- 74@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 63 -- 69@LB@ |
| 107 |
0.01169 |
0.3575 |
b3858 |
yihD |
-12.50 |
0.087903 |
89 -- 104 |
63 -- 77 |
DUF1040 protein YihD |
|
_____________88______________________________105\n_____________|_______________________________|\n5'-AUA...UUUAC___CU___________GCC____AUC_____CAUCA...CGA-3'\n______________CGC__GCCAGCACAAC___UGUU___GUCGU\n______________|||__:||||||||||___:|:|___||||:\n______________GCG__UGGUCGUGUUG___GCGA___CAGCG\n3'-UUU...UGGUU___U____________AA_____________CCAUU...UAG-5'\n_____________|_______________________________|\n_____________78______________________________62\n |
98 -- 104 |
63 -- 69 |
-31.4348 kcal/mol |
4.67185 kcal/mol |
17.7932 kcal/mol |
88 105@LB@ | |@LB@5'-AUA...UUUAC CU GCC AUC CAUCA...CGA-3'@LB@ CGC GCCAGCACAAC UGUU GUCGU@LB@ ||| :|||||||||| :|:| ||||:@LB@ GCG UGGUCGUGUUG GCGA CAGCG@LB@3'-UUU...UGGUU U AA CCAUU...UAG-5'@LB@ | |@LB@ 78 62@LB@@LB@@LB@Energy -12.50 kcal/mol@LB@Hybridization Energy -31.4348 kcal/mol@LB@Unfolding Energy - mRNA 4.67185 kcal/mol@LB@Unfolding Energy - sRNA 17.7932 kcal/mol@LB@@LB@Position - mRNA 89 -- 104@LB@Position - sRNA 63 -- 77@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 63 -- 69@LB@ |
