56 |
0.005619 |
0.3247 |
b2781 |
mazG |
-9.54 |
0.334798 |
182 -- 193 |
141 -- 152 |
nucleoside triphosphate pyrophosphohydrolase |
|
_____________181__________194\n_____________|____________|\n5'-UGA...ACCCG____________CAAUU...CGC-3'\n______________CAAUUUUCAGGA\n______________|||:||||||:|\n______________GUUGAAAGUCUU\n3'-UUU...GUUCA____________AACGC...UAG-5'\n_____________|____________|\n_____________153__________140\n |
187 -- 193 |
141 -- 147 |
-13.182 kcal/mol |
1.77322 kcal/mol |
1.81388 kcal/mol |
181 194@LB@ | |@LB@5'-UGA...ACCCG CAAUU...CGC-3'@LB@ CAAUUUUCAGGA@LB@ |||:||||||:|@LB@ GUUGAAAGUCUU@LB@3'-UUU...GUUCA AACGC...UAG-5'@LB@ | |@LB@ 153 140@LB@@LB@@LB@Energy -9.54 kcal/mol@LB@Hybridization Energy -13.182 kcal/mol@LB@Unfolding Energy - mRNA 1.77322 kcal/mol@LB@Unfolding Energy - sRNA 1.81388 kcal/mol@LB@@LB@Position - mRNA 182 -- 193@LB@Position - sRNA 141 -- 152@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 141 -- 147@LB@ |
103 |
0.0111 |
0.3575 |
b2821 |
ptrA |
-11.45 |
0.143539 |
261 -- 295 |
141 -- 175 |
protease III |
|
_____________260_______________________________________296\n_____________|_________________________________________|\n5'-GCU...GCACC___A_____G______AA____AU_______CGA_______AACCA-3'\n______________CUU_AGUCA_GCA_GA__CGGG__GG_CAGC___UUCAGGA\n______________||:_|||||_:||_||__|:||__:|_||:|___|||||:|\n______________GAG_UCAGU_UGU_CU__GUCC__UC_GUUG___AAGUCUU\n3'-UUU...GUUAU_________G___A__AC____GU__A____A_________AACGC...UAG-5'\n_____________|_________________________________________|\n_____________176_______________________________________140\n |
289 -- 295 |
141 -- 147 |
-30.7779 kcal/mol |
8.8583 kcal/mol |
8.83168 kcal/mol |
260 296@LB@ | |@LB@5'-GCU...GCACC A G AA AU CGA AACCA-3'@LB@ CUU AGUCA GCA GA CGGG GG CAGC UUCAGGA@LB@ ||: ||||| :|| || |:|| :| ||:| |||||:|@LB@ GAG UCAGU UGU CU GUCC UC GUUG AAGUCUU@LB@3'-UUU...GUUAU G A AC GU A A AACGC...UAG-5'@LB@ | |@LB@ 176 140@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -30.7779 kcal/mol@LB@Unfolding Energy - mRNA 8.8583 kcal/mol@LB@Unfolding Energy - sRNA 8.83168 kcal/mol@LB@@LB@Position - mRNA 261 -- 295@LB@Position - sRNA 141 -- 175@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 141 -- 147@LB@ |
82 |
0.008839 |
0.3575 |
b3680 |
yidL |
-8.33 |
0.532337 |
91 -- 113 |
142 -- 164 |
AraC family putative transcriptional regulator |
|
_____________90________________114\n_____________|_________________|\n5'-AAC...UGCGU________GCAG_____UUCUU...UGA-3'\n______________CGGGUCAG____UCAGA\n______________|::||||:____|||||\n______________GUUCAGUU____AGUCU\n3'-UUU...CGUCC________GAA______UAACG...UAG-5'\n_____________|_________________|\n_____________165_______________141\n |
97 -- 103 |
151 -- 157 |
-14.3717 kcal/mol |
4.36777 kcal/mol |
4.37859 kcal/mol |
90 114@LB@ | |@LB@5'-AAC...UGCGU GCAG UUCUU...UGA-3'@LB@ CGGGUCAG UCAGA@LB@ |::||||: |||||@LB@ GUUCAGUU AGUCU@LB@3'-UUU...CGUCC GAA UAACG...UAG-5'@LB@ | |@LB@ 165 141@LB@@LB@@LB@Energy -8.33 kcal/mol@LB@Hybridization Energy -14.3717 kcal/mol@LB@Unfolding Energy - mRNA 4.36777 kcal/mol@LB@Unfolding Energy - sRNA 4.37859 kcal/mol@LB@@LB@Position - mRNA 91 -- 113@LB@Position - sRNA 142 -- 164@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 151 -- 157@LB@ |
141 |
0.01524 |
0.3575 |
b0133 |
panC |
-11.57 |
0.136229 |
4 -- 24 |
142 -- 162 |
pantothenate synthetase |
|
_____________3_________25\n_____________|_________|\n5'-GGC...ACCGG_________UCCUA...UGC-3'\n______________CGGUCACAU\n______________|:||||||:\n______________GUCAGUGUG\n3'-UUU...UAUGA_________UACUA...UAG-5'\n_____________|_________|\n_____________163_______141\n |
65 -- 71 |
168 -- 174 |
-12.1402 kcal/mol |
2.67616 kcal/mol |
0.276974 kcal/mol |
3 25@LB@ | |@LB@5'-GGC...ACCGG UCCUA...UGC-3'@LB@ CGGUCACAU@LB@ |:||||||:@LB@ GUCAGUGUG@LB@3'-UUU...UAUGA UACUA...UAG-5'@LB@ | |@LB@ 163 141@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -12.1402 kcal/mol@LB@Unfolding Energy - mRNA 2.67616 kcal/mol@LB@Unfolding Energy - sRNA 0.276974 kcal/mol@LB@@LB@Position - mRNA 4 -- 24@LB@Position - sRNA 142 -- 162@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 168 -- 174@LB@ |
198 |
0.0236 |
0.3833 |
b1110 |
ycfJ |
-10.00 |
0.275196 |
69 -- 84 |
142 -- 161 |
uncharacterized protein |
|
_____________68__________________85\n_____________|___________________|\n5'-ACU...CCAGC_______GC___UU_____UUCUG...AAU-3'\n______________CAUUCCC__GCU__UCAUC\n______________||::|||__|||__|||||\n______________GUGGGGG__CGA__AGUAG\n3'-UUU...ACCCC_______AA__________-5'\n_____________|__________________|\n_____________162________________142\n |
113 -- 119 |
11 -- 17 |
-18.8572 kcal/mol |
2.50144 kcal/mol |
7.16879 kcal/mol |
68 85@LB@ | |@LB@5'-ACU...CCAGC GC UU UUCUG...AAU-3'@LB@ CAUUCCC GCU UCAUC@LB@ ||::||| ||| |||||@LB@ GUGGGGG CGA AGUAG@LB@3'-UUU...ACCCC AA -5'@LB@ | |@LB@ 162 142@LB@@LB@@LB@Energy -10.00 kcal/mol@LB@Hybridization Energy -18.8572 kcal/mol@LB@Unfolding Energy - mRNA 2.50144 kcal/mol@LB@Unfolding Energy - sRNA 7.16879 kcal/mol@LB@@LB@Position - mRNA 69 -- 84@LB@Position - sRNA 142 -- 161@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 11 -- 17@LB@ |
68 |
0.00659 |
0.3261 |
b4080 |
mdtP |
-14.15 |
0.040423 |
195 -- 221 |
144 -- 172 |
outer membrane factor of efflux pump |
|
_____________194_______________________________222\n_____________|_________________________________|\n5'-CUG...CAAGG__C_____A________AUC_____________CGUCU...CUC-3'\n______________AG_CACGC_AUGAU_CA_____GUCAACUUUCA\n______________||_|||:|_|||||_||_____|||||||||||\n______________UC_GUGUG_UACUA_GU_____CAGUUGAAAGU\n3'-UUU...AUGAG__A___________C__CCGUU___________CUUAA...UAG-5'\n_____________|_________________________________|\n_____________173_______________________________143\n |
215 -- 221 |
144 -- 150 |
-24.8993 kcal/mol |
3.71866 kcal/mol |
8.07675 kcal/mol |
194 222@LB@ | |@LB@5'-CUG...CAAGG C A AUC CGUCU...CUC-3'@LB@ AG CACGC AUGAU CA GUCAACUUUCA@LB@ || |||:| ||||| || |||||||||||@LB@ UC GUGUG UACUA GU CAGUUGAAAGU@LB@3'-UUU...AUGAG A C CCGUU CUUAA...UAG-5'@LB@ | |@LB@ 173 143@LB@@LB@@LB@Energy -14.15 kcal/mol@LB@Hybridization Energy -24.8993 kcal/mol@LB@Unfolding Energy - mRNA 3.71866 kcal/mol@LB@Unfolding Energy - sRNA 8.07675 kcal/mol@LB@@LB@Position - mRNA 195 -- 221@LB@Position - sRNA 144 -- 172@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 144 -- 150@LB@ |
109 |
0.01201 |
0.3575 |
b1096 |
pabC |
-8.08 |
0.578936 |
115 -- 139 |
144 -- 163 |
4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex |
|
_____________114____________140\n_____________|______________|\n5'-GUU...GUGUA_______CG_____GGUGG...ACG-3'\n______________ACUCCUU__GCUUC\n______________||:||:|__|||||\n______________UGGGGGA__CGAAG\n3'-UUU...CCCCG_______A______UAG-5'\n_____________|______________|\n_____________164____________143\n |
29 -- 35 |
10 -- 16 |
-15.037 kcal/mol |
0.971533 kcal/mol |
6.96912 kcal/mol |
114 140@LB@ | |@LB@5'-GUU...GUGUA CG GGUGG...ACG-3'@LB@ ACUCCUU GCUUC@LB@ ||:||:| |||||@LB@ UGGGGGA CGAAG@LB@3'-UUU...CCCCG A UAG-5'@LB@ | |@LB@ 164 143@LB@@LB@@LB@Energy -8.08 kcal/mol@LB@Hybridization Energy -15.037 kcal/mol@LB@Unfolding Energy - mRNA 0.971533 kcal/mol@LB@Unfolding Energy - sRNA 6.96912 kcal/mol@LB@@LB@Position - mRNA 115 -- 139@LB@Position - sRNA 144 -- 163@LB@Position Seed - mRNA 29 -- 35@LB@Position Seed - sRNA 10 -- 16@LB@ |
135 |
0.01453 |
0.3575 |
b2934 |
cmtB |
-15.85 |
0.018111 |
229 -- 275 |
145 -- 186 |
putative mannitol-specific enzyme IIA component of PTS |
|
_____________228___________________276\n_____________|_____________________|\n5'-AUA...AGAAU_____________________UCAGC...UGG-3'\n______________CAUCAAU_CUCAGUUAUACAU\n______________||:||||_||||||:|:||||\n______________GUGGUUA_GAGUCAGUGUGUA\n3'-UUU...AAAAU_______U_____________CUACG...UAG-5'\n_____________|_____________________|\n_____________187___________________144\n |
242 -- 248 |
166 -- 172 |
-24.8158 kcal/mol |
1.5387 kcal/mol |
5.06797 kcal/mol |
228 276@LB@ | |@LB@5'-AUA...AGAAU UCAGC...UGG-3'@LB@ CAUCAAU CUCAGUUAUACAU@LB@ ||:|||| ||||||:|:||||@LB@ GUGGUUA GAGUCAGUGUGUA@LB@3'-UUU...AAAAU U CUACG...UAG-5'@LB@ | |@LB@ 187 144@LB@@LB@@LB@Energy -15.85 kcal/mol@LB@Hybridization Energy -24.8158 kcal/mol@LB@Unfolding Energy - mRNA 1.5387 kcal/mol@LB@Unfolding Energy - sRNA 5.06797 kcal/mol@LB@@LB@Position - mRNA 229 -- 275@LB@Position - sRNA 145 -- 186@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 166 -- 172@LB@ |
100 |
0.01091 |
0.3575 |
b0123 |
cueO |
-12.06 |
0.108476 |
211 -- 256 |
146 -- 195 |
multicopper oxidase (laccase) |
|
_____________210________________________________________________257\n_____________|__________________________________________________|\n5'-CUG...ACGUC_______CUUAA________C_______UG_________U__________GCCGC...CGU-3'\n______________GUGAUUU______AAUAUUC_GUCGCGC__GGUGU_GGC___UCGGCUUU\n______________|||||||______||||:||_|||:|:|__|:||:_|||___||::||||\n______________CACUAAA______UUAUGAG_CAGUGUG__CUACG_CCG___AGUUGAAA\n3'-UUU...CCGCC_______AUGUGG_______U_______UA_____U___UUC________GUCUU...UAG-5'\n_____________|__________________________________________________|\n_____________196________________________________________________145\n |
250 -- 256 |
146 -- 152 |
-42.9672 kcal/mol |
13.2361 kcal/mol |
12.9468 kcal/mol |
210 257@LB@ | |@LB@5'-CUG...ACGUC CUUAA C UG U GCCGC...CGU-3'@LB@ GUGAUUU AAUAUUC GUCGCGC GGUGU GGC UCGGCUUU@LB@ ||||||| ||||:|| |||:|:| |:||: ||| ||::||||@LB@ CACUAAA UUAUGAG CAGUGUG CUACG CCG AGUUGAAA@LB@3'-UUU...CCGCC AUGUGG U UA U UUC GUCUU...UAG-5'@LB@ | |@LB@ 196 145@LB@@LB@@LB@Energy -12.06 kcal/mol@LB@Hybridization Energy -42.9672 kcal/mol@LB@Unfolding Energy - mRNA 13.2361 kcal/mol@LB@Unfolding Energy - sRNA 12.9468 kcal/mol@LB@@LB@Position - mRNA 211 -- 256@LB@Position - sRNA 146 -- 195@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 146 -- 152@LB@ |
106 |
0.01145 |
0.3575 |
b2350 |
gtrA |
-11.86 |
0.119007 |
4 -- 25 |
148 -- 167 |
CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase/flippase |
|
_____________3_____________26\n_____________|_____________|\n5'-GAA...UGUAU__AU_________ACAAACC-3'\n______________CU__GUCGCGCAU\n______________||__|||:|:|||\n______________GA__CAGUGUGUA\n3'-UUU...GUUAU__GU_________CUACG...UAG-5'\n_____________|_____________|\n_____________168___________147\n |
287 -- 293 |
166 -- 172 |
-13.6011 kcal/mol |
2.0532 kcal/mol |
0.604639 kcal/mol |
3 26@LB@ | |@LB@5'-GAA...UGUAU AU ACAAACC-3'@LB@ CU GUCGCGCAU@LB@ || |||:|:|||@LB@ GA CAGUGUGUA@LB@3'-UUU...GUUAU GU CUACG...UAG-5'@LB@ | |@LB@ 168 147@LB@@LB@@LB@Energy -11.86 kcal/mol@LB@Hybridization Energy -13.6011 kcal/mol@LB@Unfolding Energy - mRNA 2.0532 kcal/mol@LB@Unfolding Energy - sRNA 0.604639 kcal/mol@LB@@LB@Position - mRNA 4 -- 25@LB@Position - sRNA 148 -- 167@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 166 -- 172@LB@ |