| 183 |
0.02111 |
0.3833 |
b0461 |
tomB |
-12.41 |
0.091700 |
125 -- 158 |
128 -- 160 |
Hha toxicity attenuator; conjugation-related protein |
|
_____________124_________________________________________159\n_____________|___________________________________________|\n5'-UGC...GGAUG________CCCAAA_G_______AUC____C__C____G____UCUGU...AUC-3'\n______________AAUACUCA______A_ACAUGAU____GCA_AG_UUAA_UUUC\n______________||||||||______|_|||||||____|||_||_|:||_||||\n______________UUAUGAGU______U_UGUACUA____CGU_UC_AGUU_AAAG\n3'-UUU...UGUGG________CAG____G_______CGUC___________G____UCUUA...UAG-5'\n_____________|___________________________________________|\n_____________161_________________________________________127\n |
224 -- 230 |
163 -- 169 |
-23.2008 kcal/mol |
3.84731 kcal/mol |
8.26055 kcal/mol |
124 159@LB@ | |@LB@5'-UGC...GGAUG CCCAAA G AUC C C G UCUGU...AUC-3'@LB@ AAUACUCA A ACAUGAU GCA AG UUAA UUUC@LB@ |||||||| | ||||||| ||| || |:|| ||||@LB@ UUAUGAGU U UGUACUA CGU UC AGUU AAAG@LB@3'-UUU...UGUGG CAG G CGUC G UCUUA...UAG-5'@LB@ | |@LB@ 161 127@LB@@LB@@LB@Energy -12.41 kcal/mol@LB@Hybridization Energy -23.2008 kcal/mol@LB@Unfolding Energy - mRNA 3.84731 kcal/mol@LB@Unfolding Energy - sRNA 8.26055 kcal/mol@LB@@LB@Position - mRNA 125 -- 158@LB@Position - sRNA 128 -- 160@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 163 -- 169@LB@ |
| 66 |
0.006473 |
0.3261 |
b0712 |
ybgK |
-17.58 |
0.008094 |
217 -- 255 |
130 -- 164 |
putative allophanate hydrolase subunit 2 |
|
_____________216________________________________________________________256\n_____________|__________________________________________________________|\n5'-CGC...GGAGU_____GA__A____U_____________U__AUACC___GUG______G_________ACGGU...AUA-3'\n______________AUGCU__AG_UUAU_C___GUGCGGGCA_GU_____ACU___CAGGAU_GCGGUCGUC\n______________||:||__||_|:|:_|___:|||:||||_||_____|||___|||:||_||||||:||\n______________UAUGA__UC_AGUG_G___UACGUCCGU_CA_____UGA___GUCUUA_CGCCAGUAG\n3'-UUU...GUGGU_____G________U_UAC_________U__GU______AA_______A_________GGUGA...UAG-5'\n_____________|__________________________________________________________|\n_____________165________________________________________________________129\n |
249 -- 255 |
130 -- 136 |
-44.2735 kcal/mol |
15.0195 kcal/mol |
15.1988 kcal/mol |
216 256@LB@ | |@LB@5'-CGC...GGAGU GA A U U AUACC GUG G ACGGU...AUA-3'@LB@ AUGCU AG UUAU C GUGCGGGCA GU ACU CAGGAU GCGGUCGUC@LB@ ||:|| || |:|: | :|||:|||| || ||| |||:|| ||||||:||@LB@ UAUGA UC AGUG G UACGUCCGU CA UGA GUCUUA CGCCAGUAG@LB@3'-UUU...GUGGU G U UAC U GU AA A GGUGA...UAG-5'@LB@ | |@LB@ 165 129@LB@@LB@@LB@Energy -17.58 kcal/mol@LB@Hybridization Energy -44.2735 kcal/mol@LB@Unfolding Energy - mRNA 15.0195 kcal/mol@LB@Unfolding Energy - sRNA 15.1988 kcal/mol@LB@@LB@Position - mRNA 217 -- 255@LB@Position - sRNA 130 -- 164@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 130 -- 136@LB@ |
| 168 |
0.01937 |
0.3812 |
b4354 |
yjiY |
-11.43 |
0.145336 |
99 -- 125 |
132 -- 159 |
putative transporter |
|
_____________98__________________________________________________126\n_____________|___________________________________________________|\n5'-CUU...UACCU_____UACG_______AACUCU_____CA______A_______A_______AUUUA...ACA-3'\n______________UACUU____CGCGCGU______GGCAA__UC_ACU__CAGGAU_GCGGUCA\n______________||||:____|:|:|:|______|||||__||_|||__|||:||_|||||||\n______________AUGAG____GUGUGUA______CCGUU__AG_UGA__GUCUUA_CGCCAGU\n3'-UUU...UGGUU_____UCA________CUACGU_____C___U___AA______A_______AGGGU...UAG-5'\n_____________|___________________________________________________|\n_____________160_________________________________________________131\n |
119 -- 125 |
132 -- 138 |
-39.8751 kcal/mol |
13.2469 kcal/mol |
12.8104 kcal/mol |
98 126@LB@ | |@LB@5'-CUU...UACCU UACG AACUCU CA A A AUUUA...ACA-3'@LB@ UACUU CGCGCGU GGCAA UC ACU CAGGAU GCGGUCA@LB@ ||||: |:|:|:| ||||| || ||| |||:|| |||||||@LB@ AUGAG GUGUGUA CCGUU AG UGA GUCUUA CGCCAGU@LB@3'-UUU...UGGUU UCA CUACGU C U AA A AGGGU...UAG-5'@LB@ | |@LB@ 160 131@LB@@LB@@LB@Energy -11.43 kcal/mol@LB@Hybridization Energy -39.8751 kcal/mol@LB@Unfolding Energy - mRNA 13.2469 kcal/mol@LB@Unfolding Energy - sRNA 12.8104 kcal/mol@LB@@LB@Position - mRNA 99 -- 125@LB@Position - sRNA 132 -- 159@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 132 -- 138@LB@ |
| 9 |
0.0005653 |
0.1842 |
b3527 |
yhjJ |
-12.58 |
0.084694 |
198 -- 237 |
133 -- 170 |
putative periplasmic M16 family chaperone |
|
_____________197__________________________________________________238\n_____________|____________________________________________________|\n5'-CUC...GUUGA____GGGUU______CA_______CAAAAAU___________CGG_______UGCUG...GGC-3'\n______________UCAG_____CACAUG____GGGCA_______UCGACUUUUAG____GCGGUU\n______________||||_____||||||____:||||_______||:|||||:||____|||||:\n______________AGUC_____GUGUAC____UCCGU_______AGUUGAAAGUC____CGCCAG\n3'-UUU...UUAUG____AGU________UACG_____UC________________UUAA______UAGGG...UAG-5'\n_____________|____________________________________________________|\n_____________171__________________________________________________132\n |
222 -- 228 |
143 -- 149 |
-37.5898 kcal/mol |
10.9006 kcal/mol |
12.7286 kcal/mol |
197 238@LB@ | |@LB@5'-CUC...GUUGA GGGUU CA CAAAAAU CGG UGCUG...GGC-3'@LB@ UCAG CACAUG GGGCA UCGACUUUUAG GCGGUU@LB@ |||| |||||| :|||| ||:|||||:|| |||||:@LB@ AGUC GUGUAC UCCGU AGUUGAAAGUC CGCCAG@LB@3'-UUU...UUAUG AGU UACG UC UUAA UAGGG...UAG-5'@LB@ | |@LB@ 171 132@LB@@LB@@LB@Energy -12.58 kcal/mol@LB@Hybridization Energy -37.5898 kcal/mol@LB@Unfolding Energy - mRNA 10.9006 kcal/mol@LB@Unfolding Energy - sRNA 12.7286 kcal/mol@LB@@LB@Position - mRNA 198 -- 237@LB@Position - sRNA 133 -- 170@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 143 -- 149@LB@ |
| 63 |
0.006154 |
0.3261 |
b3750 |
rbsC |
-15.65 |
0.019915 |
89 -- 120 |
139 -- 174 |
D-ribose ABC transporter permease |
|
_____________88___________________________________121\n_____________|____________________________________|\n5'-GAU...UCAUC___________A_______UC_____GG________UACUC...UCU-3'\n______________GUCAUGCAUGA___GGGCA__UCAGC____GGAAUU\n______________||||::|||||___:||||__|||:|____:|||||\n______________CAGUGUGUACU___UCCGU__AGUUG____UCUUAA\n3'-UUU...UGAGU___________ACG_____UC_____AAAG______CGCCA...UAG-5'\n_____________|____________________________________|\n_____________175__________________________________138\n |
91 -- 97 |
166 -- 172 |
-33.4294 kcal/mol |
9.19626 kcal/mol |
8.8011 kcal/mol |
88 121@LB@ | |@LB@5'-GAU...UCAUC A UC GG UACUC...UCU-3'@LB@ GUCAUGCAUGA GGGCA UCAGC GGAAUU@LB@ ||||::||||| :|||| |||:| :|||||@LB@ CAGUGUGUACU UCCGU AGUUG UCUUAA@LB@3'-UUU...UGAGU ACG UC AAAG CGCCA...UAG-5'@LB@ | |@LB@ 175 138@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -33.4294 kcal/mol@LB@Unfolding Energy - mRNA 9.19626 kcal/mol@LB@Unfolding Energy - sRNA 8.8011 kcal/mol@LB@@LB@Position - mRNA 89 -- 120@LB@Position - sRNA 139 -- 174@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 166 -- 172@LB@ |
| 84 |
0.009006 |
0.3575 |
b1924 |
fliD |
-8.51 |
0.498321 |
24 -- 43 |
139 -- 158 |
flagellar filament capping protein |
|
_____________23_____________44\n_____________|______________|\n5'-CGU...UAAAA____C_________UUUUU...UUU-3'\n______________CAAC_UUUAGAAUU\n______________||||_||:||||||\n______________GUUG_AAGUCUUAA\n3'-UUU...GUUCA____A_________CGCCA...UAG-5'\n_____________|______________|\n_____________159____________138\n |
37 -- 43 |
139 -- 145 |
-11.0468 kcal/mol |
1.39956 kcal/mol |
1.83266 kcal/mol |
23 44@LB@ | |@LB@5'-CGU...UAAAA C UUUUU...UUU-3'@LB@ CAAC UUUAGAAUU@LB@ |||| ||:||||||@LB@ GUUG AAGUCUUAA@LB@3'-UUU...GUUCA A CGCCA...UAG-5'@LB@ | |@LB@ 159 138@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -11.0468 kcal/mol@LB@Unfolding Energy - mRNA 1.39956 kcal/mol@LB@Unfolding Energy - sRNA 1.83266 kcal/mol@LB@@LB@Position - mRNA 24 -- 43@LB@Position - sRNA 139 -- 158@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 139 -- 145@LB@ |
| 93 |
0.01041 |
0.3575 |
b3556 |
cspA |
-12.65 |
0.082193 |
78 -- 98 |
139 -- 160 |
RNA chaperone and antiterminator cold-inducible |
|
_____________77_____________________99\n_____________|______________________|\n5'-AUU...UAGUA_________C____CA______AUCGU...ACU-3'\n______________AGGCAAGUC__CUU__AGAGUU\n______________|||||||||__|||__|||:||\n______________UCCGUUCAG__GAA__UCUUAA\n3'-UUU...CUACG_________UU___AG______CGCCA...UAG-5'\n_____________|______________________|\n_____________161____________________138\n |
80 -- 86 |
152 -- 158 |
-20.4019 kcal/mol |
4.68257 kcal/mol |
5.76704 kcal/mol |
77 99@LB@ | |@LB@5'-AUU...UAGUA C CA AUCGU...ACU-3'@LB@ AGGCAAGUC CUU AGAGUU@LB@ ||||||||| ||| |||:||@LB@ UCCGUUCAG GAA UCUUAA@LB@3'-UUU...CUACG UU AG CGCCA...UAG-5'@LB@ | |@LB@ 161 138@LB@@LB@@LB@Energy -12.65 kcal/mol@LB@Hybridization Energy -20.4019 kcal/mol@LB@Unfolding Energy - mRNA 4.68257 kcal/mol@LB@Unfolding Energy - sRNA 5.76704 kcal/mol@LB@@LB@Position - mRNA 78 -- 98@LB@Position - sRNA 139 -- 160@LB@Position Seed - mRNA 80 -- 86@LB@Position Seed - sRNA 152 -- 158@LB@ |
| 58 |
0.005664 |
0.3247 |
b1878 |
flhE |
-13.77 |
0.048330 |
266 -- 286 |
140 -- 162 |
proton seal during flagellar secretion |
|
_____________265_____________________287\n_____________|_______________________|\n5'-CGU...AUGUG__________AGUGUA_______UACGC...AUC-3'\n______________GCAGGCAAGU________GGAAU\n______________||||||||||________:||||\n______________CGUCCGUUCA________UCUUA\n3'-UUU...UACUA__________GUUGAAAG_____ACGCC...UAG-5'\n_____________|_______________________|\n_____________163_____________________139\n |
269 -- 275 |
153 -- 159 |
-20.7539 kcal/mol |
2.26514 kcal/mol |
7.696 kcal/mol |
265 287@LB@ | |@LB@5'-CGU...AUGUG AGUGUA UACGC...AUC-3'@LB@ GCAGGCAAGU GGAAU@LB@ |||||||||| :||||@LB@ CGUCCGUUCA UCUUA@LB@3'-UUU...UACUA GUUGAAAG ACGCC...UAG-5'@LB@ | |@LB@ 163 139@LB@@LB@@LB@Energy -13.77 kcal/mol@LB@Hybridization Energy -20.7539 kcal/mol@LB@Unfolding Energy - mRNA 2.26514 kcal/mol@LB@Unfolding Energy - sRNA 7.696 kcal/mol@LB@@LB@Position - mRNA 266 -- 286@LB@Position - sRNA 140 -- 162@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 153 -- 159@LB@ |
| 95 |
0.01047 |
0.3575 |
b4232 |
fbp |
-15.00 |
0.027086 |
59 -- 98 |
140 -- 173 |
fructose-1 6-bisphosphatase I |
|
_____________58_______________________________________________99\n_____________|________________________________________________|\n5'-AAA...CUGCC_____UU____________U_________G_GAAAC__A_________AAUCC...CCA-3'\n______________GCUCA__UUACGCAU_AUG_CGGGCAAGU_A_____GC_UUUCAGGAU\n______________:||||__|:||:|||_|||_|:|||||||_|_____:|_||||||:||\n______________UGAGU__AGUGUGUA_UAC_GUCCGUUCA_U_____UG_AAAGUCUUA\n3'-UUU...GGUUA_____C_________C_____________G__________________ACGCC...UAG-5'\n_____________|________________________________________________|\n_____________174______________________________________________139\n |
92 -- 98 |
140 -- 146 |
-39.7088 kcal/mol |
14.0477 kcal/mol |
8.83532 kcal/mol |
58 99@LB@ | |@LB@5'-AAA...CUGCC UU U G GAAAC A AAUCC...CCA-3'@LB@ GCUCA UUACGCAU AUG CGGGCAAGU A GC UUUCAGGAU@LB@ :|||| |:||:||| ||| |:||||||| | :| ||||||:||@LB@ UGAGU AGUGUGUA UAC GUCCGUUCA U UG AAAGUCUUA@LB@3'-UUU...GGUUA C C G ACGCC...UAG-5'@LB@ | |@LB@ 174 139@LB@@LB@@LB@Energy -15.00 kcal/mol@LB@Hybridization Energy -39.7088 kcal/mol@LB@Unfolding Energy - mRNA 14.0477 kcal/mol@LB@Unfolding Energy - sRNA 8.83532 kcal/mol@LB@@LB@Position - mRNA 59 -- 98@LB@Position - sRNA 140 -- 173@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 140 -- 146@LB@ |
| 13 |
0.0007116 |
0.1842 |
b3052 |
hldE |
-13.53 |
0.054228 |
111 -- 134 |
141 -- 169 |
heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase |
|
_____________110______________135\n_____________|________________|\n5'-GCG...CGUGA________________CUGGC...CGC-3'\n______________AC_UGGUGCGGGCAAG\n______________||_||:|||:||||||\n______________UG_ACUACGUCCGUUC\n3'-UUU...CAGUG__U_____________AGUUG...UAG-5'\n_____________|________________|\n_____________170______________140\n |
119 -- 125 |
154 -- 160 |
-22.7709 kcal/mol |
5.4675 kcal/mol |
7.07904 kcal/mol |
110 135@LB@ | |@LB@5'-GCG...CGUGA CUGGC...CGC-3'@LB@ AC UGGUGCGGGCAAG@LB@ || ||:|||:||||||@LB@ UG ACUACGUCCGUUC@LB@3'-UUU...CAGUG U AGUUG...UAG-5'@LB@ | |@LB@ 170 140@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -22.7709 kcal/mol@LB@Unfolding Energy - mRNA 5.4675 kcal/mol@LB@Unfolding Energy - sRNA 7.07904 kcal/mol@LB@@LB@Position - mRNA 111 -- 134@LB@Position - sRNA 141 -- 169@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 154 -- 160@LB@ |
