| 1 |
0 |
0 |
b0069 |
sgrR |
-186.00 |
0.000000 |
1 -- 133 |
1 -- 133 |
transcriptional DNA-binding transcriptional activator of sgrS sRNA |
|
______________1____________________________________________________________________________________________________________________________________134\n______________|____________________________________________________________________________________________________________________________________|\n___________5'-_____________________________________________________________________________________________________________________________________GUUAG...UGA-3'\n______________CAUCCCACUGCAUCAGUCCUUCAAGCAUGGUUAAUCGUUGUGGGACGCUUAACCAACGCAACCAGCACAACUUCGCUGUCGCGGUAAAAUAGUGCUGAUAAAACUGACGCAUGGGGCACCCCCUUGCUUCAUC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________GUAGGGUGACGUAGUCAGGAAGUUCGUACCAAUUAGCAACACCCUGCGAAUUGGUUGCGUUGGUCGUGUUGAAGCGACAGCGCCAUUUUAUCACGACUAUUUUGACUGCGUACCCCGUGGGGGAACGAAGUAG\n3'-UUU...CGCCA_____________________________________________________________________________________________________________________________________-5'\n_____________|____________________________________________________________________________________________________________________________________|\n_____________134__________________________________________________________________________________________________________________________________1\n |
127 -- 133 |
1 -- 7 |
-280.35 kcal/mol |
42.3709 kcal/mol |
58.1542 kcal/mol |
1 134@LB@ | |@LB@ 5'- GUUAG...UGA-3'@LB@ CAUCCCACUGCAUCAGUCCUUCAAGCAUGGUUAAUCGUUGUGGGACGCUUAACCAACGCAACCAGCACAACUUCGCUGUCGCGGUAAAAUAGUGCUGAUAAAACUGACGCAUGGGGCACCCCCUUGCUUCAUC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ GUAGGGUGACGUAGUCAGGAAGUUCGUACCAAUUAGCAACACCCUGCGAAUUGGUUGCGUUGGUCGUGUUGAAGCGACAGCGCCAUUUUAUCACGACUAUUUUGACUGCGUACCCCGUGGGGGAACGAAGUAG@LB@3'-UUU...CGCCA -5'@LB@ | |@LB@ 134 1@LB@@LB@@LB@Energy -186.00 kcal/mol@LB@Hybridization Energy -280.35 kcal/mol@LB@Unfolding Energy - mRNA 42.3709 kcal/mol@LB@Unfolding Energy - sRNA 58.1542 kcal/mol@LB@@LB@Position - mRNA 1 -- 133@LB@Position - sRNA 1 -- 133@LB@Position Seed - mRNA 127 -- 133@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 172 |
0.01969 |
0.3812 |
b0213 |
yafS |
-9.47 |
0.344290 |
95 -- 113 |
1 -- 19 |
putative S-adenosyl-L-methionine-dependent methyltransferase |
|
_____________94________114\n_____________|_________|\n5'-UGG...UCAAA_________CUCCU...UCA-3'\n______________CUGUCGUGG\n______________||||||:||\n______________GACAGCGCC\n3'-UUU...GAAGC_________AUUUU...UAG-5'\n_____________|_________|\n_____________20________0\n |
228 -- 234 |
50 -- 56 |
-16.2917 kcal/mol |
2.78861 kcal/mol |
4.02 kcal/mol |
94 114@LB@ | |@LB@5'-UGG...UCAAA CUCCU...UCA-3'@LB@ CUGUCGUGG@LB@ ||||||:||@LB@ GACAGCGCC@LB@3'-UUU...GAAGC AUUUU...UAG-5'@LB@ | |@LB@ 20 0@LB@@LB@@LB@Energy -9.47 kcal/mol@LB@Hybridization Energy -16.2917 kcal/mol@LB@Unfolding Energy - mRNA 2.78861 kcal/mol@LB@Unfolding Energy - sRNA 4.02 kcal/mol@LB@@LB@Position - mRNA 95 -- 113@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 50 -- 56@LB@ |
| 33 |
0.002591 |
0.2642 |
b0331 |
prpB |
-22.44 |
0.000909 |
137 -- 159 |
1 -- 22 |
2-methylisocitrate lyase |
|
_____________136__________________160\n_____________|____________________|\n5'-GUC...AUUGU_____A______________UUUAU...UGG-3'\n______________GGCAC_CCCCUUGCUUUGUC\n______________|||||_||||||||||::||\n______________CCGUG_GGGGAACGAAGUAG\n3'-UUU...GUACC____________________-5'\n_____________|___________________|\n_____________23__________________1\n |
153 -- 159 |
1 -- 7 |
-33.844 kcal/mol |
4.2272 kcal/mol |
8.43224 kcal/mol |
136 160@LB@ | |@LB@5'-GUC...AUUGU A UUUAU...UGG-3'@LB@ GGCAC CCCCUUGCUUUGUC@LB@ ||||| ||||||||||::||@LB@ CCGUG GGGGAACGAAGUAG@LB@3'-UUU...GUACC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -22.44 kcal/mol@LB@Hybridization Energy -33.844 kcal/mol@LB@Unfolding Energy - mRNA 4.2272 kcal/mol@LB@Unfolding Energy - sRNA 8.43224 kcal/mol@LB@@LB@Position - mRNA 137 -- 159@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 105 |
0.01118 |
0.3575 |
b0439 |
lon |
-14.09 |
0.041610 |
272 -- 293 |
1 -- 24 |
DNA-binding ATP-dependent protease La |
|
_____________271_______294\n_____________|_________|\n5'-AUC...CACAU_________CUUAU...GGG-3'\n______________GGUCAUCCC\n______________|||||||||\n______________CCAGUAGGG\n3'-UUU...UAACG_________UGACG...UAG-5'\n_____________|_________|\n_____________25________0\n |
277 -- 283 |
128 -- 134 |
-16.7868 kcal/mol |
1.03204 kcal/mol |
4.55487 kcal/mol |
271 294@LB@ | |@LB@5'-AUC...CACAU CUUAU...GGG-3'@LB@ GGUCAUCCC@LB@ |||||||||@LB@ CCAGUAGGG@LB@3'-UUU...UAACG UGACG...UAG-5'@LB@ | |@LB@ 25 0@LB@@LB@@LB@Energy -14.09 kcal/mol@LB@Hybridization Energy -16.7868 kcal/mol@LB@Unfolding Energy - mRNA 1.03204 kcal/mol@LB@Unfolding Energy - sRNA 4.55487 kcal/mol@LB@@LB@Position - mRNA 272 -- 293@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 128 -- 134@LB@ |
| 76 |
0.007832 |
0.3458 |
b1054 |
lpxL |
-10.56 |
0.214918 |
224 -- 240 |
1 -- 17 |
lauryl-acyl carrier protein (ACP)-dependent acyltransferase |
|
_____________223_______241\n_____________|_________|\n5'-AAA...CGCAC_________CGCGU...CCU-3'\n______________UGCUUCAUC\n______________|||||||||\n______________ACGAAGUAG\n3'-UUU...GGGGA_________-5'\n_____________|________|\n_____________18_______1\n |
234 -- 240 |
1 -- 7 |
-13.5925 kcal/mol |
1.26369 kcal/mol |
0.710349 kcal/mol |
223 241@LB@ | |@LB@5'-AAA...CGCAC CGCGU...CCU-3'@LB@ UGCUUCAUC@LB@ |||||||||@LB@ ACGAAGUAG@LB@3'-UUU...GGGGA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -13.5925 kcal/mol@LB@Unfolding Energy - mRNA 1.26369 kcal/mol@LB@Unfolding Energy - sRNA 0.710349 kcal/mol@LB@@LB@Position - mRNA 224 -- 240@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 195 |
0.02319 |
0.3833 |
b1233 |
ychJ |
-7.86 |
0.620262 |
61 -- 80 |
1 -- 18 |
UPF0225 family protein |
|
_____________60____________________________________81\n_____________|_____________________________________|\n5'-CUU...GCUAC_______________A___CUACU_____________ACGCC...UCA-3'\n______________UGCUCGGUUA_ACAU_GUG_____CAGGC_GGUUAAU\n______________|:|||:||:|_||||_:||_____|||||_:||:||:\n______________AUGAGUCAGU_UGUA_UAC_____GUCCG_UCAGUUG\n3'-UUU...UGGUU__________G____C_____________U_______AAAGU...UAG-5'\n_____________|_____________________________________|\n_____________19____________________________________0\n |
139 -- 145 |
171 -- 177 |
-29.0991 kcal/mol |
9.80481 kcal/mol |
8.18679 kcal/mol |
60 81@LB@ | |@LB@5'-CUU...GCUAC A CUACU ACGCC...UCA-3'@LB@ UGCUCGGUUA ACAU GUG CAGGC GGUUAAU@LB@ |:|||:||:| |||| :|| ||||| :||:||:@LB@ AUGAGUCAGU UGUA UAC GUCCG UCAGUUG@LB@3'-UUU...UGGUU G C U AAAGU...UAG-5'@LB@ | |@LB@ 19 0@LB@@LB@@LB@Energy -7.86 kcal/mol@LB@Hybridization Energy -29.0991 kcal/mol@LB@Unfolding Energy - mRNA 9.80481 kcal/mol@LB@Unfolding Energy - sRNA 8.18679 kcal/mol@LB@@LB@Position - mRNA 61 -- 80@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 139 -- 145@LB@Position Seed - sRNA 171 -- 177@LB@ |
| 59 |
0.005693 |
0.3247 |
b1959 |
yedA |
-9.74 |
0.306961 |
258 -- 278 |
1 -- 22 |
amino acid exporter for phenylalanine threonine |
|
_____________257_______279\n_____________|_________|\n5'-UCA...UGAUA_________CAGGU...GCU-3'\n______________CUUGCUUCA\n______________|||||||||\n______________GAACGAAGU\n3'-UUU...UGGGG_________AG-5'\n_____________|_________|\n_____________23________0\n |
90 -- 96 |
3 -- 9 |
-13.1616 kcal/mol |
3.16944 kcal/mol |
1.03153 kcal/mol |
257 279@LB@ | |@LB@5'-UCA...UGAUA CAGGU...GCU-3'@LB@ CUUGCUUCA@LB@ |||||||||@LB@ GAACGAAGU@LB@3'-UUU...UGGGG AG-5'@LB@ | |@LB@ 23 0@LB@@LB@@LB@Energy -9.74 kcal/mol@LB@Hybridization Energy -13.1616 kcal/mol@LB@Unfolding Energy - mRNA 3.16944 kcal/mol@LB@Unfolding Energy - sRNA 1.03153 kcal/mol@LB@@LB@Position - mRNA 258 -- 278@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 90 -- 96@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 57 |
0.00565 |
0.3247 |
b2081 |
yegQ |
-17.30 |
0.009213 |
136 -- 160 |
1 -- 21 |
putative peptidase |
|
_____________135_______________________161\n_____________|_________________________|\n5'-AUU...AAGUG_______U_____AACC________AGGUG...GUU-3'\n______________GGGGCAC_CCCCU____GCUUCAUC\n______________|||||||_|||||____||||||||\n______________CCCCGUG_GGGGA____CGAAGUAG\n3'-UUU...GCGUA_____________A___________-5'\n_____________|________________________|\n_____________22_______________________1\n |
154 -- 160 |
1 -- 7 |
-36.7075 kcal/mol |
11.7869 kcal/mol |
10.2895 kcal/mol |
135 161@LB@ | |@LB@5'-AUU...AAGUG U AACC AGGUG...GUU-3'@LB@ GGGGCAC CCCCU GCUUCAUC@LB@ ||||||| ||||| ||||||||@LB@ CCCCGUG GGGGA CGAAGUAG@LB@3'-UUU...GCGUA A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -17.30 kcal/mol@LB@Hybridization Energy -36.7075 kcal/mol@LB@Unfolding Energy - mRNA 11.7869 kcal/mol@LB@Unfolding Energy - sRNA 10.2895 kcal/mol@LB@@LB@Position - mRNA 136 -- 160@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 71 |
0.00726 |
0.3408 |
b2944 |
yggI |
-9.32 |
0.365111 |
156 -- 174 |
1 -- 18 |
Zn-dependent metalloprotease-related protein |
|
_____________155_____________175\n_____________|_______________|\n5'-GAA...AGCCA________AG_____UUUUC...ACC-3'\n______________CCUCUUGC__UCAUC\n______________||:|||||__|||||\n______________GGGGAACG__AGUAG\n3'-UUU...CCGUG________A______-5'\n_____________|______________|\n_____________19_____________1\n |
161 -- 167 |
7 -- 13 |
-18.0684 kcal/mol |
1.30619 kcal/mol |
6.71812 kcal/mol |
155 175@LB@ | |@LB@5'-GAA...AGCCA AG UUUUC...ACC-3'@LB@ CCUCUUGC UCAUC@LB@ ||:||||| |||||@LB@ GGGGAACG AGUAG@LB@3'-UUU...CCGUG A -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -18.0684 kcal/mol@LB@Unfolding Energy - mRNA 1.30619 kcal/mol@LB@Unfolding Energy - sRNA 6.71812 kcal/mol@LB@@LB@Position - mRNA 156 -- 174@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 7 -- 13@LB@ |
| 200 |
0.02363 |
0.3833 |
b3068 |
mug |
-12.10 |
0.106144 |
279 -- 297 |
1 -- 19 |
G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase |
|
_____________278__________________298\n_____________|____________________|\n5'-UGG...GGACU___UU_______________CGG-3'\n______________GGU__UCCCUUUGCU_CAUC\n______________||:__:|||:|||||_||||\n______________CCG__GGGGGAACGA_GUAG\n3'-UUU...GUACC___U___________A____-5'\n_____________|___________________|\n_____________20__________________1\n |
287 -- 293 |
6 -- 12 |
-22.9494 kcal/mol |
3.41941 kcal/mol |
8.43224 kcal/mol |
278 298@LB@ | |@LB@5'-UGG...GGACU UU CGG-3'@LB@ GGU UCCCUUUGCU CAUC@LB@ ||: :|||:||||| ||||@LB@ CCG GGGGGAACGA GUAG@LB@3'-UUU...GUACC U A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -12.10 kcal/mol@LB@Hybridization Energy -22.9494 kcal/mol@LB@Unfolding Energy - mRNA 3.41941 kcal/mol@LB@Unfolding Energy - sRNA 8.43224 kcal/mol@LB@@LB@Position - mRNA 279 -- 297@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 6 -- 12@LB@ |
