| 169 |
0.01639 |
0.3152 |
bsu07850 |
yfkM |
-11.33 |
0.135062 |
186 -- 208 |
22 -- 34 |
general stress protein 18 |
|
_____________185_____________________209\n_____________|_______________________|\n5'-UGU...AAAGC___A___UAUGAAUCA_______AAAAA...CUG-3'\n______________GGG_GGU_________UGGGGAA\n______________:||_|||_________|||||||\n______________UCC_CCA_________ACCCCUU\n3'-UUU...CUAUC_______________________GUCUC...AUA-5'\n_____________|_______________________|\n_____________35______________________21\n |
202 -- 208 |
22 -- 28 |
-15.0114 kcal/mol |
2.66027 kcal/mol |
1.02154 kcal/mol |
185 209@LB@ | |@LB@5'-UGU...AAAGC A UAUGAAUCA AAAAA...CUG-3'@LB@ GGG GGU UGGGGAA@LB@ :|| ||| |||||||@LB@ UCC CCA ACCCCUU@LB@3'-UUU...CUAUC GUCUC...AUA-5'@LB@ | |@LB@ 35 21@LB@@LB@@LB@Energy -11.33 kcal/mol@LB@Hybridization Energy -15.0114 kcal/mol@LB@Unfolding Energy - mRNA 2.66027 kcal/mol@LB@Unfolding Energy - sRNA 1.02154 kcal/mol@LB@@LB@Position - mRNA 186 -- 208@LB@Position - sRNA 22 -- 34@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 179 |
0.01703 |
0.3152 |
bsu08425 |
mprF |
-11.09 |
0.146985 |
133 -- 167 |
22 -- 52 |
phosphatidylglycerol lysyltransferase |
|
_____________132__________________________________168\n_____________|____________________________________|\n5'-ACU...AAUAA___UAG___UAUAA___GU_____AUUA________GAGGA...AUC-3'\n______________CGG____UG_____UGA__UGGAG____UUGGGGGA\n______________|||____||_____|||__|:|||____||||||:|\n______________GCC____AC_____ACU__AUCUC____AACCCCUU\n3'-UUU...AAAAA___UAGA__UAG____________CCC_________GUCUC...AUA-5'\n_____________|____________________________________|\n_____________53___________________________________21\n |
161 -- 167 |
22 -- 28 |
-20.3953 kcal/mol |
7.42087 kcal/mol |
1.8808 kcal/mol |
132 168@LB@ | |@LB@5'-ACU...AAUAA UAG UAUAA GU AUUA GAGGA...AUC-3'@LB@ CGG UG UGA UGGAG UUGGGGGA@LB@ ||| || ||| |:||| ||||||:|@LB@ GCC AC ACU AUCUC AACCCCUU@LB@3'-UUU...AAAAA UAGA UAG CCC GUCUC...AUA-5'@LB@ | |@LB@ 53 21@LB@@LB@@LB@Energy -11.09 kcal/mol@LB@Hybridization Energy -20.3953 kcal/mol@LB@Unfolding Energy - mRNA 7.42087 kcal/mol@LB@Unfolding Energy - sRNA 1.8808 kcal/mol@LB@@LB@Position - mRNA 133 -- 167@LB@Position - sRNA 22 -- 52@LB@Position Seed - mRNA 161 -- 167@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 1 |
3.729e-08 |
0.0001244 |
bsu14890 |
ctaC |
-17.27 |
0.009980 |
187 -- 199 |
23 -- 34 |
cytochrome c oxidase subunit 2 |
|
_____________186___________200\n_____________|_____________|\n5'-CGA...AGAAA__________U__AAUGG...GCG-3'\n______________AGGGGUUGGG_GA\n______________||||||||||_||\n______________UCCCCAACCC_CU\n3'-UUU...CUAUC_____________UGUCU...AUA-5'\n_____________|_____________|\n_____________35____________22\n |
190 -- 196 |
25 -- 31 |
-21.5157 kcal/mol |
4.12609 kcal/mol |
0.123213 kcal/mol |
186 200@LB@ | |@LB@5'-CGA...AGAAA U AAUGG...GCG-3'@LB@ AGGGGUUGGG GA@LB@ |||||||||| ||@LB@ UCCCCAACCC CU@LB@3'-UUU...CUAUC UGUCU...AUA-5'@LB@ | |@LB@ 35 22@LB@@LB@@LB@Energy -17.27 kcal/mol@LB@Hybridization Energy -21.5157 kcal/mol@LB@Unfolding Energy - mRNA 4.12609 kcal/mol@LB@Unfolding Energy - sRNA 0.123213 kcal/mol@LB@@LB@Position - mRNA 187 -- 199@LB@Position - sRNA 23 -- 34@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 5 |
2.545e-05 |
0.01698 |
bsu22540 |
qcrC |
-19.98 |
0.002129 |
169 -- 196 |
23 -- 48 |
menaquinol-cytochrome c reductase cytochrome b/c subunit |
|
_____________168____________________________197\n_____________|______________________________|\n5'-AAC...UAAAC__________CGA___AA____A_______UGACA...AAA-3'\n______________UCUUGAUCUG___AUA__AGGG___GGGGA\n______________||||||||||___|||__||||___|||||\n______________AGAACUAGAC___UAU__UCCC___CCCCU\n3'-UUU...AGCCU________________C_____CAA_____UGUCU...AUA-5'\n_____________|______________________________|\n_____________49_____________________________22\n |
172 -- 178 |
39 -- 45 |
-27.164 kcal/mol |
6.20558 kcal/mol |
0.979889 kcal/mol |
168 197@LB@ | |@LB@5'-AAC...UAAAC CGA AA A UGACA...AAA-3'@LB@ UCUUGAUCUG AUA AGGG GGGGA@LB@ |||||||||| ||| |||| |||||@LB@ AGAACUAGAC UAU UCCC CCCCU@LB@3'-UUU...AGCCU C CAA UGUCU...AUA-5'@LB@ | |@LB@ 49 22@LB@@LB@@LB@Energy -19.98 kcal/mol@LB@Hybridization Energy -27.164 kcal/mol@LB@Unfolding Energy - mRNA 6.20558 kcal/mol@LB@Unfolding Energy - sRNA 0.979889 kcal/mol@LB@@LB@Position - mRNA 169 -- 196@LB@Position - sRNA 23 -- 48@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 10 |
0.0001049 |
0.035 |
bsu34190 |
yvfH |
-16.62 |
0.013859 |
188 -- 201 |
23 -- 36 |
L-lactate permease |
|
_____________187____________202\n_____________|______________|\n5'-UGG...UUCAA_________U____UGCAA...CGA-3'\n______________GGAGGGGUU_GGGA\n______________:||||||||_||||\n______________UCUCCCCAA_CCCU\n3'-UUU...GACUA_________C____UGUCU...AUA-5'\n_____________|______________|\n_____________37_____________22\n |
190 -- 196 |
28 -- 34 |
-23.4111 kcal/mol |
6.64684 kcal/mol |
0.139628 kcal/mol |
187 202@LB@ | |@LB@5'-UGG...UUCAA U UGCAA...CGA-3'@LB@ GGAGGGGUU GGGA@LB@ :|||||||| ||||@LB@ UCUCCCCAA CCCU@LB@3'-UUU...GACUA C UGUCU...AUA-5'@LB@ | |@LB@ 37 22@LB@@LB@@LB@Energy -16.62 kcal/mol@LB@Hybridization Energy -23.4111 kcal/mol@LB@Unfolding Energy - mRNA 6.64684 kcal/mol@LB@Unfolding Energy - sRNA 0.139628 kcal/mol@LB@@LB@Position - mRNA 188 -- 201@LB@Position - sRNA 23 -- 36@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 28 |
0.0009752 |
0.1113 |
bsu00830 |
ctsR |
-15.39 |
0.025224 |
189 -- 206 |
23 -- 36 |
transcriptional regulator CtsR |
|
_____________188________________207\n_____________|__________________|\n5'-UGG...GUAAA___G_______AGU____CAUAA...CAG-3'\n______________GGA_GGGGUUG___GGGA\n______________:||_|||||||___||||\n______________UCU_CCCCAAC___CCCU\n3'-UUU...GACUA__________________UGUCU...AUA-5'\n_____________|__________________|\n_____________37_________________22\n |
193 -- 199 |
27 -- 33 |
-19.308 kcal/mol |
3.78136 kcal/mol |
0.139628 kcal/mol |
188 207@LB@ | |@LB@5'-UGG...GUAAA G AGU CAUAA...CAG-3'@LB@ GGA GGGGUUG GGGA@LB@ :|| ||||||| ||||@LB@ UCU CCCCAAC CCCU@LB@3'-UUU...GACUA UGUCU...AUA-5'@LB@ | |@LB@ 37 22@LB@@LB@@LB@Energy -15.39 kcal/mol@LB@Hybridization Energy -19.308 kcal/mol@LB@Unfolding Energy - mRNA 3.78136 kcal/mol@LB@Unfolding Energy - sRNA 0.139628 kcal/mol@LB@@LB@Position - mRNA 189 -- 206@LB@Position - sRNA 23 -- 36@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 50 |
0.002285 |
0.1525 |
bsu22460 |
ypjH |
-13.49 |
0.058216 |
160 -- 194 |
23 -- 52 |
glycosyltransferase YpjH |
|
_____________159____________________________________195\n_____________|______________________________________|\n5'-AAG...CCAAA_____GCUGAUG_______A_____U__C_________CGAAC...AUG-3'\n______________CGGAU_______CUUGAUC_UGAUG__G___UUGGGGG\n______________|||||_______|||||||_||||:__|___||||||:\n______________GCCUA_______GAACUAG_ACUAU__C___AACCCCU\n3'-UUU...AAAAA_________________________CU_CCC_______UGUCU...AUA-5'\n_____________|______________________________________|\n_____________53_____________________________________22\n |
188 -- 194 |
23 -- 29 |
-25.8094 kcal/mol |
11.3359 kcal/mol |
0.981961 kcal/mol |
159 195@LB@ | |@LB@5'-AAG...CCAAA GCUGAUG A U C CGAAC...AUG-3'@LB@ CGGAU CUUGAUC UGAUG G UUGGGGG@LB@ ||||| ||||||| ||||: | ||||||:@LB@ GCCUA GAACUAG ACUAU C AACCCCU@LB@3'-UUU...AAAAA CU CCC UGUCU...AUA-5'@LB@ | |@LB@ 53 22@LB@@LB@@LB@Energy -13.49 kcal/mol@LB@Hybridization Energy -25.8094 kcal/mol@LB@Unfolding Energy - mRNA 11.3359 kcal/mol@LB@Unfolding Energy - sRNA 0.981961 kcal/mol@LB@@LB@Position - mRNA 160 -- 194@LB@Position - sRNA 23 -- 52@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 98 |
0.008247 |
0.2778 |
bsu19360 |
odhB |
-11.30 |
0.136272 |
146 -- 191 |
23 -- 51 |
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex |
|
_____________145____________________________________________192\n_____________|______________________________________________|\n5'-AAG...GAACA___ACGUA___U_________CUU_ACUCGCAAAAACUAAG_____AAUGA...AAU-3'\n______________GGA_____UUG_AUCUGAUAG___G________________GGGGA\n______________|||_____|||_|||||||||___|________________|||||\n______________CCU_____AAC_UAGACUAUC___C________________CCCCU\n3'-UUU...AAAAG___AG________________UCC_CAA__________________UGUCU...AUA-5'\n_____________|______________________________________________|\n_____________52_____________________________________________22\n |
160 -- 166 |
35 -- 41 |
-19.511 kcal/mol |
7.22607 kcal/mol |
0.980049 kcal/mol |
145 192@LB@ | |@LB@5'-AAG...GAACA ACGUA U CUU ACUCGCAAAAACUAAG AAUGA...AAU-3'@LB@ GGA UUG AUCUGAUAG G GGGGA@LB@ ||| ||| ||||||||| | |||||@LB@ CCU AAC UAGACUAUC C CCCCU@LB@3'-UUU...AAAAG AG UCC CAA UGUCU...AUA-5'@LB@ | |@LB@ 52 22@LB@@LB@@LB@Energy -11.30 kcal/mol@LB@Hybridization Energy -19.511 kcal/mol@LB@Unfolding Energy - mRNA 7.22607 kcal/mol@LB@Unfolding Energy - sRNA 0.980049 kcal/mol@LB@@LB@Position - mRNA 146 -- 191@LB@Position - sRNA 23 -- 51@LB@Position Seed - mRNA 160 -- 166@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 101 |
0.008451 |
0.2778 |
bsu32150 |
paiA |
-11.07 |
0.148459 |
77 -- 92 |
23 -- 39 |
protease synthase and sporulation negative regulatory protein PAI 1 |
|
_____________76________________93\n_____________|_________________|\n5'-AUU...AUCAC_______A______U__UGAAG...CAC-3'\n______________GAUAGGG__GUUGG_GA\n______________|||||:|__|||||_||\n______________CUAUCUC__CAACC_CU\n3'-UUU...CUAGA_______CC_____C__UGUCU...AUA-5'\n_____________|_________________|\n_____________40________________22\n |
77 -- 83 |
33 -- 39 |
-14.8457 kcal/mol |
2.98855 kcal/mol |
0.791731 kcal/mol |
76 93@LB@ | |@LB@5'-AUU...AUCAC A U UGAAG...CAC-3'@LB@ GAUAGGG GUUGG GA@LB@ |||||:| ||||| ||@LB@ CUAUCUC CAACC CU@LB@3'-UUU...CUAGA CC C UGUCU...AUA-5'@LB@ | |@LB@ 40 22@LB@@LB@@LB@Energy -11.07 kcal/mol@LB@Hybridization Energy -14.8457 kcal/mol@LB@Unfolding Energy - mRNA 2.98855 kcal/mol@LB@Unfolding Energy - sRNA 0.791731 kcal/mol@LB@@LB@Position - mRNA 77 -- 92@LB@Position - sRNA 23 -- 39@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 118 |
0.01022 |
0.2883 |
bsu19370 |
sucA |
-9.59 |
0.243554 |
183 -- 190 |
23 -- 30 |
2-oxoglutarate dehydrogenase subunit E1 |
|
_____________182______191\n_____________|________|\n5'-UUU...UUUAA________UAAUA...AUC-3'\n______________GUUGGGGG\n______________|||||||:\n______________CAACCCCU\n3'-UUU...CUCCC________UGUCU...AUA-5'\n_____________|________|\n_____________31_______22\n |
184 -- 190 |
23 -- 29 |
-13.0923 kcal/mol |
3.48895 kcal/mol |
0.018115 kcal/mol |
182 191@LB@ | |@LB@5'-UUU...UUUAA UAAUA...AUC-3'@LB@ GUUGGGGG@LB@ |||||||:@LB@ CAACCCCU@LB@3'-UUU...CUCCC UGUCU...AUA-5'@LB@ | |@LB@ 31 22@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -13.0923 kcal/mol@LB@Unfolding Energy - mRNA 3.48895 kcal/mol@LB@Unfolding Energy - sRNA 0.018115 kcal/mol@LB@@LB@Position - mRNA 183 -- 190@LB@Position - sRNA 23 -- 30@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 23 -- 29@LB@ |
