| 64 |
0.004032 |
0.2071 |
bsu23050 |
fmnP |
-11.92 |
0.108419 |
30 -- 48 |
32 -- 51 |
riboflavin transporter FmnP |
|
_____________29___________________49\n_____________|____________________|\n5'-GUG...AGUCU____GG___GAA________UUCAU...UAA-3'\n______________GGAU___GA___GAUGGAGG\n______________||||___||___|||:||||\n______________CCUA___CU___CUAUCUCC\n3'-UUU...AAAAG____GAA__AGA________CCAAC...AUA-5'\n_____________|____________________|\n_____________52___________________31\n |
42 -- 48 |
32 -- 38 |
-18.1391 kcal/mol |
5.24431 kcal/mol |
0.97021 kcal/mol |
29 49@LB@ | |@LB@5'-GUG...AGUCU GG GAA UUCAU...UAA-3'@LB@ GGAU GA GAUGGAGG@LB@ |||| || |||:||||@LB@ CCUA CU CUAUCUCC@LB@3'-UUU...AAAAG GAA AGA CCAAC...AUA-5'@LB@ | |@LB@ 52 31@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -18.1391 kcal/mol@LB@Unfolding Energy - mRNA 5.24431 kcal/mol@LB@Unfolding Energy - sRNA 0.97021 kcal/mol@LB@@LB@Position - mRNA 30 -- 48@LB@Position - sRNA 32 -- 51@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 79 |
0.005838 |
0.2448 |
bsu25980 |
yqbT |
-11.66 |
0.119794 |
52 -- 65 |
32 -- 53 |
'Evidence 3: Function proposed based on presence of conserved amino acid motif structural feature or limited homology; Product type ps: structure' |
bsu12730 |
_____________51_____________________66\n_____________|______________________|\n5'-CGU...AUCCC______________________AAGCA...CGU-3'\n______________UCGG________CUGAUAGAGG\n______________||||________||||||||||\n______________AGCC________GACUAUCUCC\n3'-UUU...AAAAA____UAGAACUA__________CCAAC...AUA-5'\n_____________|______________________|\n_____________54_____________________31\n |
59 -- 65 |
32 -- 38 |
-19.4839 kcal/mol |
6.84464 kcal/mol |
0.981755 kcal/mol |
51 66@LB@ | |@LB@5'-CGU...AUCCC AAGCA...CGU-3'@LB@ UCGG CUGAUAGAGG@LB@ |||| ||||||||||@LB@ AGCC GACUAUCUCC@LB@3'-UUU...AAAAA UAGAACUA CCAAC...AUA-5'@LB@ | |@LB@ 54 31@LB@@LB@@LB@Energy -11.66 kcal/mol@LB@Hybridization Energy -19.4839 kcal/mol@LB@Unfolding Energy - mRNA 6.84464 kcal/mol@LB@Unfolding Energy - sRNA 0.981755 kcal/mol@LB@@LB@Position - mRNA 52 -- 65@LB@Position - sRNA 32 -- 53@LB@Position Seed - mRNA 59 -- 65@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 84 |
0.006671 |
0.2588 |
bsu14270 |
moeB |
-18.74 |
0.004465 |
187 -- 207 |
32 -- 51 |
molybdopterin-synthase adenylyltransferase |
|
_____________186___________________208\n_____________|_____________________|\n5'-UUG...GAUAA___GAACA_____________AACGU...GAG-3'\n______________GGA_____GGUUUGAUGGAGG\n______________|||_____|:|:||||:||||\n______________CCU_____CUAGACUAUCUCC\n3'-UUU...AAAAG___AGAA______________CCAAC...AUA-5'\n_____________|_____________________|\n_____________52____________________31\n |
201 -- 207 |
32 -- 38 |
-23.059 kcal/mol |
3.35069 kcal/mol |
0.97021 kcal/mol |
186 208@LB@ | |@LB@5'-UUG...GAUAA GAACA AACGU...GAG-3'@LB@ GGA GGUUUGAUGGAGG@LB@ ||| |:|:||||:||||@LB@ CCU CUAGACUAUCUCC@LB@3'-UUU...AAAAG AGAA CCAAC...AUA-5'@LB@ | |@LB@ 52 31@LB@@LB@@LB@Energy -18.74 kcal/mol@LB@Hybridization Energy -23.059 kcal/mol@LB@Unfolding Energy - mRNA 3.35069 kcal/mol@LB@Unfolding Energy - sRNA 0.97021 kcal/mol@LB@@LB@Position - mRNA 187 -- 207@LB@Position - sRNA 32 -- 51@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 91 |
0.007102 |
0.2604 |
bsu36520 |
glnK |
-7.98 |
0.387566 |
247 -- 267 |
32 -- 49 |
nitrogen regulatory PII-like protein |
|
_____________246____________________268\n_____________|______________________|\n5'-GGU...GGCAA_______AAAG_______C___AACUC...CUU-3'\n______________AUUUUGA____CUGA_AG_AGG\n______________||:||||____||||_||_|||\n______________UAGAACU____GACU_UC_UCC\n3'-UUU...AAGCC_______A_______A______CCAAC...AUA-5'\n_____________|______________________|\n_____________50_____________________31\n |
247 -- 253 |
43 -- 49 |
-11.0905 kcal/mol |
2.14263 kcal/mol |
0.970192 kcal/mol |
246 268@LB@ | |@LB@5'-GGU...GGCAA AAAG C AACUC...CUU-3'@LB@ AUUUUGA CUGA AG AGG@LB@ ||:|||| |||| || |||@LB@ UAGAACU GACU UC UCC@LB@3'-UUU...AAGCC A A CCAAC...AUA-5'@LB@ | |@LB@ 50 31@LB@@LB@@LB@Energy -7.98 kcal/mol@LB@Hybridization Energy -11.0905 kcal/mol@LB@Unfolding Energy - mRNA 2.14263 kcal/mol@LB@Unfolding Energy - sRNA 0.970192 kcal/mol@LB@@LB@Position - mRNA 247 -- 267@LB@Position - sRNA 32 -- 49@LB@Position Seed - mRNA 247 -- 253@LB@Position Seed - sRNA 43 -- 49@LB@ |
| 108 |
0.009234 |
0.2778 |
bsu12360 |
exuT |
-9.24 |
0.271038 |
118 -- 128 |
32 -- 43 |
hexuronate transporter |
|
_____________117__________129\n_____________|____________|\n5'-AAA...UUCCU____________AUUUA...UUA-3'\n______________GUC_GAUGGAGG\n______________:||_|||:||||\n______________UAG_CUAUCUCC\n3'-UUU...AGAAC___A________CCAAC...AUA-5'\n_____________|____________|\n_____________44___________31\n |
122 -- 128 |
32 -- 38 |
-13.9988 kcal/mol |
3.80022 kcal/mol |
0.959872 kcal/mol |
117 129@LB@ | |@LB@5'-AAA...UUCCU AUUUA...UUA-3'@LB@ GUC GAUGGAGG@LB@ :|| |||:||||@LB@ UAG CUAUCUCC@LB@3'-UUU...AGAAC A CCAAC...AUA-5'@LB@ | |@LB@ 44 31@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -13.9988 kcal/mol@LB@Unfolding Energy - mRNA 3.80022 kcal/mol@LB@Unfolding Energy - sRNA 0.959872 kcal/mol@LB@@LB@Position - mRNA 118 -- 128@LB@Position - sRNA 32 -- 43@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 110 |
0.009311 |
0.2778 |
bsu18230 |
yngG |
-6.09 |
0.597733 |
269 -- 285 |
32 -- 53 |
hydroxymethylglutaryl-CoA lyase YngG |
|
_____________268____________________286\n_____________|______________________|\n5'-AAA...CCCGU_______GCAAC__________AUAAA...GGA-3'\n______________UUGGAUC__________AGAGG\n______________|:|||||__________|||||\n______________AGCCUAG__________UCUCC\n3'-UUU...AAAAA_______AACUAGACUA_____CCAAC...AUA-5'\n_____________|______________________|\n_____________54_____________________31\n |
269 -- 275 |
47 -- 53 |
-12.5955 kcal/mol |
5.52332 kcal/mol |
0.981755 kcal/mol |
268 286@LB@ | |@LB@5'-AAA...CCCGU GCAAC AUAAA...GGA-3'@LB@ UUGGAUC AGAGG@LB@ |:||||| |||||@LB@ AGCCUAG UCUCC@LB@3'-UUU...AAAAA AACUAGACUA CCAAC...AUA-5'@LB@ | |@LB@ 54 31@LB@@LB@@LB@Energy -6.09 kcal/mol@LB@Hybridization Energy -12.5955 kcal/mol@LB@Unfolding Energy - mRNA 5.52332 kcal/mol@LB@Unfolding Energy - sRNA 0.981755 kcal/mol@LB@@LB@Position - mRNA 269 -- 285@LB@Position - sRNA 32 -- 53@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 112 |
0.009326 |
0.2778 |
bsu13200 |
rsbRB |
-15.32 |
0.026068 |
265 -- 282 |
32 -- 51 |
RsbT co-antagonist protein RsbRB |
bsu19450 |
_____________264__________________283\n_____________|____________________|\n5'-CUU...GGAAU_________AAC________AAAGU...CGC-3'\n______________GGAU__UGA___GAUGGAGG\n______________||||__|||___|||:||||\n______________CCUA__ACU___CUAUCUCC\n3'-UUU...AAAAG____GA___AGA________CCAAC...AUA-5'\n_____________|____________________|\n_____________52___________________31\n |
276 -- 282 |
32 -- 38 |
-18.0013 kcal/mol |
1.71479 kcal/mol |
0.97021 kcal/mol |
264 283@LB@ | |@LB@5'-CUU...GGAAU AAC AAAGU...CGC-3'@LB@ GGAU UGA GAUGGAGG@LB@ |||| ||| |||:||||@LB@ CCUA ACU CUAUCUCC@LB@3'-UUU...AAAAG GA AGA CCAAC...AUA-5'@LB@ | |@LB@ 52 31@LB@@LB@@LB@Energy -15.32 kcal/mol@LB@Hybridization Energy -18.0013 kcal/mol@LB@Unfolding Energy - mRNA 1.71479 kcal/mol@LB@Unfolding Energy - sRNA 0.97021 kcal/mol@LB@@LB@Position - mRNA 265 -- 282@LB@Position - sRNA 32 -- 51@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 113 |
0.00948 |
0.2799 |
bsu31960 |
dhbF |
-9.87 |
0.222399 |
16 -- 37 |
32 -- 53 |
dimodular nonribosomal peptide synthase |
|
_____________15______________________38\n_____________|_______________________|\n5'-AGA...CUCGA___U__________C________AUCAU...CAG-3'\n______________UCG_GGUCUUGAUU_GGUA_AGG\n______________|||_|:|||||||:_|:||_|||\n______________AGC_CUAGAACUAG_CUAU_UCC\n3'-UUU...AAAAA______________A____C___CCAAC...AUA-5'\n_____________|_______________________|\n_____________54______________________31\n |
22 -- 28 |
42 -- 48 |
-21.9493 kcal/mol |
11.0963 kcal/mol |
0.981755 kcal/mol |
15 38@LB@ | |@LB@5'-AGA...CUCGA U C AUCAU...CAG-3'@LB@ UCG GGUCUUGAUU GGUA AGG@LB@ ||| |:|||||||: |:|| |||@LB@ AGC CUAGAACUAG CUAU UCC@LB@3'-UUU...AAAAA A C CCAAC...AUA-5'@LB@ | |@LB@ 54 31@LB@@LB@@LB@Energy -9.87 kcal/mol@LB@Hybridization Energy -21.9493 kcal/mol@LB@Unfolding Energy - mRNA 11.0963 kcal/mol@LB@Unfolding Energy - sRNA 0.981755 kcal/mol@LB@@LB@Position - mRNA 16 -- 37@LB@Position - sRNA 32 -- 53@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 121 |
0.01072 |
0.2883 |
bsu28520 |
etfA |
-20.27 |
0.001775 |
7 -- 28 |
32 -- 50 |
electron transfer flavoprotein subunit alpha |
|
_____________6______________________29\n_____________|______________________|\n_____5'-CUUGAU_____________ACGA_____AUGCU...AUG-3'\n______________GAUCUUGAUCUGG____AGAGG\n______________||||||||||||:____|||||\n______________CUAGAACUAGACU____UCUCC\n3'-UUU...AAAGC_____________A________CCAAC...AUA-5'\n_____________|______________________|\n_____________51_____________________31\n |
13 -- 19 |
38 -- 44 |
-25.4493 kcal/mol |
4.21131 kcal/mol |
0.970199 kcal/mol |
6 29@LB@ | |@LB@ 5'-CUUGAU ACGA AUGCU...AUG-3'@LB@ GAUCUUGAUCUGG AGAGG@LB@ ||||||||||||: |||||@LB@ CUAGAACUAGACU UCUCC@LB@3'-UUU...AAAGC A CCAAC...AUA-5'@LB@ | |@LB@ 51 31@LB@@LB@@LB@Energy -20.27 kcal/mol@LB@Hybridization Energy -25.4493 kcal/mol@LB@Unfolding Energy - mRNA 4.21131 kcal/mol@LB@Unfolding Energy - sRNA 0.970199 kcal/mol@LB@@LB@Position - mRNA 7 -- 28@LB@Position - sRNA 32 -- 50@LB@Position Seed - mRNA 13 -- 19@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 133 |
0.01175 |
0.2883 |
bsu11610 |
ppnK |
-12.45 |
0.088788 |
273 -- 294 |
32 -- 53 |
inorganic polyphosphate/ATP-NAD kinase 1 |
|
_____________272____________________295\n_____________|______________________|\n5'-CCA...AUUUA____________A___AACU__AUGAAA-3'\n______________UUGGAUUUUGAU_UGG____GG\n______________|:||||:|||||_||:____||\n______________AGCCUAGAACUA_ACU____CC\n3'-UUU...AAAAA____________G___AUCU__CCAAC...AUA-5'\n_____________|______________________|\n_____________54_____________________31\n |
278 -- 284 |
42 -- 48 |
-17.5759 kcal/mol |
4.14878 kcal/mol |
0.981755 kcal/mol |
272 295@LB@ | |@LB@5'-CCA...AUUUA A AACU AUGAAA-3'@LB@ UUGGAUUUUGAU UGG GG@LB@ |:||||:||||| ||: ||@LB@ AGCCUAGAACUA ACU CC@LB@3'-UUU...AAAAA G AUCU CCAAC...AUA-5'@LB@ | |@LB@ 54 31@LB@@LB@@LB@Energy -12.45 kcal/mol@LB@Hybridization Energy -17.5759 kcal/mol@LB@Unfolding Energy - mRNA 4.14878 kcal/mol@LB@Unfolding Energy - sRNA 0.981755 kcal/mol@LB@@LB@Position - mRNA 273 -- 294@LB@Position - sRNA 32 -- 53@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 42 -- 48@LB@ |
