| 193 |
0.01926 |
0.3269 |
bsu04460 |
dctR |
-12.61 |
0.083358 |
128 -- 157 |
20 -- 50 |
C4-dicarboxylate response regulator DctR |
|
_____________127_____________________________158\n_____________|_______________________________|\n5'-CUG...CGAUA__AG______CACAU_C____CA________UCUUU...UCU-3'\n______________GA__UUGAUU_____G_GGGG___GGGGACA\n______________||__|||||:_____|_||||___|||:|||\n______________CU__AACUAG_____C_CCCC___CCCUUGU\n3'-UUU...AAAGC__AG______ACUAU_U____AAC_______CUCUC...AUA-5'\n_____________|_______________________________|\n_____________51______________________________19\n |
151 -- 157 |
20 -- 26 |
-24.008 kcal/mol |
7.17274 kcal/mol |
4.22897 kcal/mol |
127 158@LB@ | |@LB@5'-CUG...CGAUA AG CACAU C CA UCUUU...UCU-3'@LB@ GA UUGAUU G GGGG GGGGACA@LB@ || |||||: | |||| |||:|||@LB@ CU AACUAG C CCCC CCCUUGU@LB@3'-UUU...AAAGC AG ACUAU U AAC CUCUC...AUA-5'@LB@ | |@LB@ 51 19@LB@@LB@@LB@Energy -12.61 kcal/mol@LB@Hybridization Energy -24.008 kcal/mol@LB@Unfolding Energy - mRNA 7.17274 kcal/mol@LB@Unfolding Energy - sRNA 4.22897 kcal/mol@LB@@LB@Position - mRNA 128 -- 157@LB@Position - sRNA 20 -- 50@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 3 |
5.299e-07 |
0.0005893 |
bsu18000 |
citB |
-22.45 |
0.000394 |
173 -- 202 |
21 -- 50 |
aconitate hydratase |
|
_____________172______________________________203\n_____________|________________________________|\n5'-UCU...AGAAU____________________AUU____A____GGCAA...CGU-3'\n______________GAUC_UGAUCUGA_AGGGGG___UUGG_GAAU\n______________||||_||||||||_||:|||___||||_|||:\n______________CUAG_ACUAGACU_UCUCCC___AACC_CUUG\n3'-UUU...AAAGC____A________A______C______C____UCUCU...AUA-5'\n_____________|________________________________|\n_____________51_______________________________20\n |
178 -- 184 |
38 -- 44 |
-32.0259 kcal/mol |
6.8093 kcal/mol |
2.76846 kcal/mol |
172 203@LB@ | |@LB@5'-UCU...AGAAU AUU A GGCAA...CGU-3'@LB@ GAUC UGAUCUGA AGGGGG UUGG GAAU@LB@ |||| |||||||| ||:||| |||| |||:@LB@ CUAG ACUAGACU UCUCCC AACC CUUG@LB@3'-UUU...AAAGC A A C C UCUCU...AUA-5'@LB@ | |@LB@ 51 20@LB@@LB@@LB@Energy -22.45 kcal/mol@LB@Hybridization Energy -32.0259 kcal/mol@LB@Unfolding Energy - mRNA 6.8093 kcal/mol@LB@Unfolding Energy - sRNA 2.76846 kcal/mol@LB@@LB@Position - mRNA 173 -- 202@LB@Position - sRNA 21 -- 50@LB@Position Seed - mRNA 178 -- 184@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 4 |
1.471e-05 |
0.01227 |
bsu32200 |
yutJ |
-17.92 |
0.007061 |
210 -- 239 |
21 -- 53 |
NADH dehydrogenase-like protein YutJ |
|
_____________209_______________________________240\n_____________|_________________________________|\n5'-UGA...AAAAA________________C_____UUAC_______AUGCG...UAA-3'\n______________UUGG_UCUUGAUC_GG_GGAGG_____GGGAAC\n______________|:||_||||||||_|:_:||||_____||||||\n______________AGCC_AGAACUAG_CU_UCUCC_____CCCUUG\n3'-UUU...AAAAA____U________A__A_____CCAAC______UCUCU...AUA-5'\n_____________|_________________________________|\n_____________54________________________________20\n |
215 -- 221 |
41 -- 47 |
-30.8017 kcal/mol |
10.1098 kcal/mol |
2.77573 kcal/mol |
209 240@LB@ | |@LB@5'-UGA...AAAAA C UUAC AUGCG...UAA-3'@LB@ UUGG UCUUGAUC GG GGAGG GGGAAC@LB@ |:|| |||||||| |: :|||| ||||||@LB@ AGCC AGAACUAG CU UCUCC CCCUUG@LB@3'-UUU...AAAAA U A A CCAAC UCUCU...AUA-5'@LB@ | |@LB@ 54 20@LB@@LB@@LB@Energy -17.92 kcal/mol@LB@Hybridization Energy -30.8017 kcal/mol@LB@Unfolding Energy - mRNA 10.1098 kcal/mol@LB@Unfolding Energy - sRNA 2.77573 kcal/mol@LB@@LB@Position - mRNA 210 -- 239@LB@Position - sRNA 21 -- 53@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 41 -- 47@LB@ |
| 9 |
8.212e-05 |
0.03044 |
bsu07800 |
treP |
-22.21 |
0.000470 |
182 -- 210 |
21 -- 52 |
PTS system-trehalose-specific transporter subunit EIIBC |
|
_____________181____________________________________211\n_____________|______________________________________|\n5'-UUA...AAAAA_____AC__________________GGCAUG_______UGAAC...UUG-3'\n______________CGGAU___________GGAGGGGUU______GGGGAAC\n______________|||||___________:||||||||______|||||||\n______________GCCUA___________UCUCCCCAA______CCCCUUG\n3'-UUU...AAAAA_____GAACUAGACUA______________________UCUCU...AUA-5'\n_____________|______________________________________|\n_____________53_____________________________________20\n |
204 -- 210 |
21 -- 27 |
-29.9746 kcal/mol |
4.99416 kcal/mol |
2.77037 kcal/mol |
181 211@LB@ | |@LB@5'-UUA...AAAAA AC GGCAUG UGAAC...UUG-3'@LB@ CGGAU GGAGGGGUU GGGGAAC@LB@ ||||| :|||||||| |||||||@LB@ GCCUA UCUCCCCAA CCCCUUG@LB@3'-UUU...AAAAA GAACUAGACUA UCUCU...AUA-5'@LB@ | |@LB@ 53 20@LB@@LB@@LB@Energy -22.21 kcal/mol@LB@Hybridization Energy -29.9746 kcal/mol@LB@Unfolding Energy - mRNA 4.99416 kcal/mol@LB@Unfolding Energy - sRNA 2.77037 kcal/mol@LB@@LB@Position - mRNA 182 -- 210@LB@Position - sRNA 21 -- 52@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 46 |
0.002102 |
0.1496 |
bsu35160 |
uvrA |
-18.29 |
0.005742 |
210 -- 232 |
21 -- 44 |
UvrABC system protein A |
|
_____________209______________________233\n_____________|________________________|\n5'-CAC...CUAUG____G________UGAA_______CAGGG...GUU-3'\n______________GAUC_GAUAGAGG_____GGGAGC\n______________||||_||||||||_____||||:|\n______________CUAG_CUAUCUCC_____CCCUUG\n3'-UUU...UAGAA____A________CCAAC______UCUCU...AUA-5'\n_____________|________________________|\n_____________45_______________________20\n |
216 -- 222 |
32 -- 38 |
-26.4443 kcal/mol |
5.3846 kcal/mol |
2.7671 kcal/mol |
209 233@LB@ | |@LB@5'-CAC...CUAUG G UGAA CAGGG...GUU-3'@LB@ GAUC GAUAGAGG GGGAGC@LB@ |||| |||||||| ||||:|@LB@ CUAG CUAUCUCC CCCUUG@LB@3'-UUU...UAGAA A CCAAC UCUCU...AUA-5'@LB@ | |@LB@ 45 20@LB@@LB@@LB@Energy -18.29 kcal/mol@LB@Hybridization Energy -26.4443 kcal/mol@LB@Unfolding Energy - mRNA 5.3846 kcal/mol@LB@Unfolding Energy - sRNA 2.7671 kcal/mol@LB@@LB@Position - mRNA 210 -- 232@LB@Position - sRNA 21 -- 44@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 58 |
0.003185 |
0.1832 |
bsu24100 |
bkdR |
-13.90 |
0.048953 |
199 -- 241 |
21 -- 51 |
sigma L-dependent transcriptional regulator YqiR |
|
_____________198_________________________________________242\n_____________|___________________________________________|\n5'-AAU...UAUCG____GCAAAA___A_______U___UGCC__CAAAA_______GGCGU...ACA-3'\n______________GGAU______GGU_CUGAUAG_AGG____GG_____GGGGAAC\n______________||||______|:|_|||||||_|||____||_____|||||||\n______________CCUA______CUA_GACUAUC_UCC____CC_____CCCCUUG\n3'-UUU...AAAAG____GAA________________________AA__________UCUCU...AUA-5'\n_____________|___________________________________________|\n_____________52__________________________________________20\n |
235 -- 241 |
21 -- 27 |
-28.1295 kcal/mol |
11.4588 kcal/mol |
2.76846 kcal/mol |
198 242@LB@ | |@LB@5'-AAU...UAUCG GCAAAA A U UGCC CAAAA GGCGU...ACA-3'@LB@ GGAU GGU CUGAUAG AGG GG GGGGAAC@LB@ |||| |:| ||||||| ||| || |||||||@LB@ CCUA CUA GACUAUC UCC CC CCCCUUG@LB@3'-UUU...AAAAG GAA AA UCUCU...AUA-5'@LB@ | |@LB@ 52 20@LB@@LB@@LB@Energy -13.90 kcal/mol@LB@Hybridization Energy -28.1295 kcal/mol@LB@Unfolding Energy - mRNA 11.4588 kcal/mol@LB@Unfolding Energy - sRNA 2.76846 kcal/mol@LB@@LB@Position - mRNA 199 -- 241@LB@Position - sRNA 21 -- 51@LB@Position Seed - mRNA 235 -- 241@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 62 |
0.003827 |
0.2059 |
bsu11360 |
appD |
-16.60 |
0.014008 |
157 -- 196 |
21 -- 48 |
oligopeptide transport ATP-binding protein AppD |
|
_____________156______________________________________197\n_____________|________________________________________|\n5'-AUG...CUUUC______AAACG_____CAACA_______GGAAA_______UAGCA...AAG-3'\n______________UCUUGA_____UUUGA_____AGAGGGG_____GGGGAGC\n______________||||||_____|:|||_____|||||||_____|||||:|\n______________AGAACU_____AGACU_____UCUCCCC_____CCCCUUG\n3'-UUU...AGCCU________________A___________AA__________UCUCU...AUA-5'\n_____________|________________________________________|\n_____________49_______________________________________20\n |
190 -- 196 |
21 -- 27 |
-30.7931 kcal/mol |
11.4214 kcal/mol |
2.76831 kcal/mol |
156 197@LB@ | |@LB@5'-AUG...CUUUC AAACG CAACA GGAAA UAGCA...AAG-3'@LB@ UCUUGA UUUGA AGAGGGG GGGGAGC@LB@ |||||| |:||| ||||||| |||||:|@LB@ AGAACU AGACU UCUCCCC CCCCUUG@LB@3'-UUU...AGCCU A AA UCUCU...AUA-5'@LB@ | |@LB@ 49 20@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -30.7931 kcal/mol@LB@Unfolding Energy - mRNA 11.4214 kcal/mol@LB@Unfolding Energy - sRNA 2.76831 kcal/mol@LB@@LB@Position - mRNA 157 -- 196@LB@Position - sRNA 21 -- 48@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 21 -- 27@LB@ |
| 65 |
0.004149 |
0.2071 |
bsu25230 |
yqxD |
-11.91 |
0.108824 |
196 -- 217 |
21 -- 43 |
Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 9387153 |
|
_____________195_____________________218\n_____________|_______________________|\n5'-ACA...CAGGA____A________A____A____UACUC...CAU-3'\n______________GUUU_AUGGAGGG__UGG_GAAU\n______________:|:|_||:|||||__|||_|||:\n______________UAGA_UAUCUCCC__ACC_CUUG\n3'-UUU...AGAAC____C________CA___C____UCUCU...AUA-5'\n_____________|_______________________|\n_____________44______________________20\n |
202 -- 208 |
31 -- 37 |
-19.0868 kcal/mol |
4.40975 kcal/mol |
2.76238 kcal/mol |
195 218@LB@ | |@LB@5'-ACA...CAGGA A A A UACUC...CAU-3'@LB@ GUUU AUGGAGGG UGG GAAU@LB@ :|:| ||:||||| ||| |||:@LB@ UAGA UAUCUCCC ACC CUUG@LB@3'-UUU...AGAAC C CA C UCUCU...AUA-5'@LB@ | |@LB@ 44 20@LB@@LB@@LB@Energy -11.91 kcal/mol@LB@Hybridization Energy -19.0868 kcal/mol@LB@Unfolding Energy - mRNA 4.40975 kcal/mol@LB@Unfolding Energy - sRNA 2.76238 kcal/mol@LB@@LB@Position - mRNA 196 -- 217@LB@Position - sRNA 21 -- 43@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 31 -- 37@LB@ |
| 68 |
0.004453 |
0.2184 |
bsu22580 |
ypiB |
-13.80 |
0.051176 |
183 -- 197 |
21 -- 39 |
Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 16847875 |
|
_____________182_________________198\n_____________|___________________|\n5'-AGC...CGAAC________A__________UACAU...ACU-3'\n______________GAUAGAGG_____GGGAAU\n______________||||||||_____|||||:\n______________CUAUCUCC_____CCCUUG\n3'-UUU...CUAGA________CCAAC______UCUCU...AUA-5'\n_____________|___________________|\n_____________40__________________20\n |
184 -- 190 |
32 -- 38 |
-18.5124 kcal/mol |
2.13446 kcal/mol |
2.58006 kcal/mol |
182 198@LB@ | |@LB@5'-AGC...CGAAC A UACAU...ACU-3'@LB@ GAUAGAGG GGGAAU@LB@ |||||||| |||||:@LB@ CUAUCUCC CCCUUG@LB@3'-UUU...CUAGA CCAAC UCUCU...AUA-5'@LB@ | |@LB@ 40 20@LB@@LB@@LB@Energy -13.80 kcal/mol@LB@Hybridization Energy -18.5124 kcal/mol@LB@Unfolding Energy - mRNA 2.13446 kcal/mol@LB@Unfolding Energy - sRNA 2.58006 kcal/mol@LB@@LB@Position - mRNA 183 -- 197@LB@Position - sRNA 21 -- 39@LB@Position Seed - mRNA 184 -- 190@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 72 |
0.005249 |
0.2402 |
bsu31470 |
kapD |
-7.49 |
0.439018 |
141 -- 147 |
21 -- 27 |
3'-5' exonuclease KapD |
|
_____________140_____148\n_____________|_______|\n5'-UUU...GAGAA_______UGAUA...GAA-3'\n______________GGGGAAU\n______________||||||:\n______________CCCCUUG\n3'-UUU...CCCAA_______UCUCU...AUA-5'\n_____________|_______|\n_____________28______20\n |
141 -- 147 |
21 -- 27 |
-11.5159 kcal/mol |
2.2254 kcal/mol |
1.80207 kcal/mol |
140 148@LB@ | |@LB@5'-UUU...GAGAA UGAUA...GAA-3'@LB@ GGGGAAU@LB@ ||||||:@LB@ CCCCUUG@LB@3'-UUU...CCCAA UCUCU...AUA-5'@LB@ | |@LB@ 28 20@LB@@LB@@LB@Energy -7.49 kcal/mol@LB@Hybridization Energy -11.5159 kcal/mol@LB@Unfolding Energy - mRNA 2.2254 kcal/mol@LB@Unfolding Energy - sRNA 1.80207 kcal/mol@LB@@LB@Position - mRNA 141 -- 147@LB@Position - sRNA 21 -- 27@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 21 -- 27@LB@ |
