| 74 |
0.005527 |
0.2441 |
bsu14880 |
ctaB |
-11.75 |
0.115909 |
1 -- 10 |
34 -- 43 |
protoheme IX farnesyltransferase 2 |
|
______________1_________11\n______________|_________|\n___________5'-__________AAUAA...UCG-3'\n______________GUCUGAUAGA\n______________:|||||||||\n______________UAGACUAUCU\n3'-UUU...AGAAC__________CCCCA...AUA-5'\n_____________|__________|\n_____________44_________33\n |
4 -- 10 |
34 -- 40 |
-13.2371 kcal/mol |
0.533082 kcal/mol |
0.957751 kcal/mol |
1 11@LB@ | |@LB@ 5'- AAUAA...UCG-3'@LB@ GUCUGAUAGA@LB@ :|||||||||@LB@ UAGACUAUCU@LB@3'-UUU...AGAAC CCCCA...AUA-5'@LB@ | |@LB@ 44 33@LB@@LB@@LB@Energy -11.75 kcal/mol@LB@Hybridization Energy -13.2371 kcal/mol@LB@Unfolding Energy - mRNA 0.533082 kcal/mol@LB@Unfolding Energy - sRNA 0.957751 kcal/mol@LB@@LB@Position - mRNA 1 -- 10@LB@Position - sRNA 34 -- 43@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 95 |
0.007929 |
0.2778 |
bsu40080 |
gntZ |
-7.93 |
0.392252 |
74 -- 93 |
34 -- 54 |
6-phosphogluconate dehydrogenase |
|
_____________73____________________94\n_____________|_____________________|\n5'-ACU...AAUAC________AAGCA____A___AACAU...ACA-3'\n______________UUCGGAUU______UGA_AGA\n______________|||||||:______|||_|||\n______________AAGCCUAG______ACU_UCU\n3'-UUU...CAAAA________AACUAG___A___CCCCA...AUA-5'\n_____________|_____________________|\n_____________55____________________33\n |
75 -- 81 |
47 -- 53 |
-13.3211 kcal/mol |
3.78785 kcal/mol |
1.60142 kcal/mol |
73 94@LB@ | |@LB@5'-ACU...AAUAC AAGCA A AACAU...ACA-3'@LB@ UUCGGAUU UGA AGA@LB@ |||||||: ||| |||@LB@ AAGCCUAG ACU UCU@LB@3'-UUU...CAAAA AACUAG A CCCCA...AUA-5'@LB@ | |@LB@ 55 33@LB@@LB@@LB@Energy -7.93 kcal/mol@LB@Hybridization Energy -13.3211 kcal/mol@LB@Unfolding Energy - mRNA 3.78785 kcal/mol@LB@Unfolding Energy - sRNA 1.60142 kcal/mol@LB@@LB@Position - mRNA 74 -- 93@LB@Position - sRNA 34 -- 54@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 160 |
0.01451 |
0.3008 |
bsu30080 |
yteV |
-11.71 |
0.117611 |
279 -- 298 |
34 -- 53 |
sporulation protein cse60 |
|
_____________278__________________299\n_____________|____________________|\n5'-UUU...GGAUA_____GGAGCAG________UA-3'\n______________UCGGA_______CUGAUAGA\n______________|||||_______||||||||\n______________AGCCU_______GACUAUCU\n3'-UUU...AAAAA_____AGAACUA________CCCCA...AUA-5'\n_____________|____________________|\n_____________54___________________33\n |
292 -- 298 |
34 -- 40 |
-18.1644 kcal/mol |
5.47565 kcal/mol |
0.98171 kcal/mol |
278 299@LB@ | |@LB@5'-UUU...GGAUA GGAGCAG UA-3'@LB@ UCGGA CUGAUAGA@LB@ ||||| ||||||||@LB@ AGCCU GACUAUCU@LB@3'-UUU...AAAAA AGAACUA CCCCA...AUA-5'@LB@ | |@LB@ 54 33@LB@@LB@@LB@Energy -11.71 kcal/mol@LB@Hybridization Energy -18.1644 kcal/mol@LB@Unfolding Energy - mRNA 5.47565 kcal/mol@LB@Unfolding Energy - sRNA 0.98171 kcal/mol@LB@@LB@Position - mRNA 279 -- 298@LB@Position - sRNA 34 -- 53@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 197 |
0.0195 |
0.3269 |
bsu04670 |
rsbRA |
-10.67 |
0.170227 |
19 -- 37 |
34 -- 52 |
RsbT co-antagonist protein RsbRA |
|
_____________18__________________38\n_____________|___________________|\n5'-CGG...UCAUC_____GA___AA_______UAAGG...AAU-3'\n______________UGGAU__UGA__UGAUGGA\n______________:||||__|||__||||:||\n______________GCCUA__ACU__ACUAUCU\n3'-UUU...AAAAA_____GA___AG_______CCCCA...AUA-5'\n_____________|___________________|\n_____________53__________________33\n |
31 -- 37 |
34 -- 40 |
-17.5102 kcal/mol |
5.86002 kcal/mol |
0.976339 kcal/mol |
18 38@LB@ | |@LB@5'-CGG...UCAUC GA AA UAAGG...AAU-3'@LB@ UGGAU UGA UGAUGGA@LB@ :|||| ||| ||||:||@LB@ GCCUA ACU ACUAUCU@LB@3'-UUU...AAAAA GA AG CCCCA...AUA-5'@LB@ | |@LB@ 53 33@LB@@LB@@LB@Energy -10.67 kcal/mol@LB@Hybridization Energy -17.5102 kcal/mol@LB@Unfolding Energy - mRNA 5.86002 kcal/mol@LB@Unfolding Energy - sRNA 0.976339 kcal/mol@LB@@LB@Position - mRNA 19 -- 37@LB@Position - sRNA 34 -- 52@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 52 |
0.002415 |
0.1549 |
bsu03320 |
nasB |
-8.41 |
0.344801 |
188 -- 199 |
36 -- 51 |
assimilatory nitrate reductase electron transfer subunit |
|
_____________187______________200\n_____________|________________|\n5'-UUU...CCAAA________________CAUGA...UCA-3'\n______________GGA____GGUCUGAUA\n______________|||____|:|||||||\n______________CCU____CUAGACUAU\n3'-UUU...AAAAG___AGAA_________CUCCC...AUA-5'\n_____________|________________|\n_____________52_______________35\n |
193 -- 199 |
36 -- 42 |
-13.3061 kcal/mol |
3.93547 kcal/mol |
0.960469 kcal/mol |
187 200@LB@ | |@LB@5'-UUU...CCAAA CAUGA...UCA-3'@LB@ GGA GGUCUGAUA@LB@ ||| |:|||||||@LB@ CCU CUAGACUAU@LB@3'-UUU...AAAAG AGAA CUCCC...AUA-5'@LB@ | |@LB@ 52 35@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -13.3061 kcal/mol@LB@Unfolding Energy - mRNA 3.93547 kcal/mol@LB@Unfolding Energy - sRNA 0.960469 kcal/mol@LB@@LB@Position - mRNA 188 -- 199@LB@Position - sRNA 36 -- 51@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 38 |
0.001645 |
0.1432 |
bsu19540 |
yodB |
-7.66 |
0.420262 |
259 -- 271 |
37 -- 51 |
ArsR family transcriptional regulator |
|
_____________258_____________272\n_____________|_______________|\n5'-GAG...ACGAU___AC__________CAUCC...AAC-3'\n______________GGA____GGUCUGAU\n______________|||____|:||||||\n______________CCU____CUAGACUA\n3'-UUU...AAAAG___AGAA________UCUCC...AUA-5'\n_____________|_______________|\n_____________52______________36\n |
265 -- 271 |
37 -- 43 |
-11.6813 kcal/mol |
3.05786 kcal/mol |
0.959935 kcal/mol |
258 272@LB@ | |@LB@5'-GAG...ACGAU AC CAUCC...AAC-3'@LB@ GGA GGUCUGAU@LB@ ||| |:||||||@LB@ CCU CUAGACUA@LB@3'-UUU...AAAAG AGAA UCUCC...AUA-5'@LB@ | |@LB@ 52 36@LB@@LB@@LB@Energy -7.66 kcal/mol@LB@Hybridization Energy -11.6813 kcal/mol@LB@Unfolding Energy - mRNA 3.05786 kcal/mol@LB@Unfolding Energy - sRNA 0.959935 kcal/mol@LB@@LB@Position - mRNA 259 -- 271@LB@Position - sRNA 37 -- 51@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 37 -- 43@LB@ |
| 93 |
0.007837 |
0.2778 |
bsu33430 |
yvgQ |
-5.79 |
0.632053 |
172 -- 180 |
38 -- 46 |
sulfite reductase [NADPH] hemoprotein beta-component |
|
_____________171_______181\n_____________|_________|\n5'-GCU...GUAUA_________CUUGA...UGA-3'\n______________UUGAUUUGA\n______________|||||:|||\n______________AACUAGACU\n3'-UUU...CCUAG_________AUCUC...AUA-5'\n_____________|_________|\n_____________47________37\n |
174 -- 180 |
38 -- 44 |
-9.05403 kcal/mol |
2.31378 kcal/mol |
0.946105 kcal/mol |
171 181@LB@ | |@LB@5'-GCU...GUAUA CUUGA...UGA-3'@LB@ UUGAUUUGA@LB@ |||||:|||@LB@ AACUAGACU@LB@3'-UUU...CCUAG AUCUC...AUA-5'@LB@ | |@LB@ 47 37@LB@@LB@@LB@Energy -5.79 kcal/mol@LB@Hybridization Energy -9.05403 kcal/mol@LB@Unfolding Energy - mRNA 2.31378 kcal/mol@LB@Unfolding Energy - sRNA 0.946105 kcal/mol@LB@@LB@Position - mRNA 172 -- 180@LB@Position - sRNA 38 -- 46@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 159 |
0.01439 |
0.3008 |
bsu00560 |
spoVT |
-10.85 |
0.160189 |
242 -- 254 |
41 -- 53 |
stage V sporulation protein T |
|
_____________241___________255\n_____________|_____________|\n5'-ACA...UUAGG_______G_____CCUAA...CGC-3'\n______________UCGGGUC_UGAUU\n______________||||:||_||||:\n______________AGCCUAG_ACUAG\n3'-UUU...AAAAA_______A_____ACUAU...AUA-5'\n_____________|_____________|\n_____________54____________40\n |
242 -- 248 |
47 -- 53 |
-14.0147 kcal/mol |
2.18551 kcal/mol |
0.979862 kcal/mol |
241 255@LB@ | |@LB@5'-ACA...UUAGG G CCUAA...CGC-3'@LB@ UCGGGUC UGAUU@LB@ ||||:|| ||||:@LB@ AGCCUAG ACUAG@LB@3'-UUU...AAAAA A ACUAU...AUA-5'@LB@ | |@LB@ 54 40@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -14.0147 kcal/mol@LB@Unfolding Energy - mRNA 2.18551 kcal/mol@LB@Unfolding Energy - sRNA 0.979862 kcal/mol@LB@@LB@Position - mRNA 242 -- 254@LB@Position - sRNA 41 -- 53@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 47 -- 53@LB@ |
| 140 |
0.01224 |
0.2883 |
bsu36480 |
ywoD |
-6.33 |
0.569704 |
31 -- 37 |
66 -- 72 |
MFS transporter |
|
_____________30______38\n_____________|_______|\n5'-AUU...AUAUC_______AAAGC...AUA-3'\n______________GGGGUGG\n______________|||||:|\n______________CCCCAUC\n3'-UUU...ACCGC_______GCGGU...AUA-5'\n_____________|_______|\n_____________73______65\n |
31 -- 37 |
66 -- 72 |
-11.1749 kcal/mol |
4.83937 kcal/mol |
0.00366414 kcal/mol |
30 38@LB@ | |@LB@5'-AUU...AUAUC AAAGC...AUA-3'@LB@ GGGGUGG@LB@ |||||:|@LB@ CCCCAUC@LB@3'-UUU...ACCGC GCGGU...AUA-5'@LB@ | |@LB@ 73 65@LB@@LB@@LB@Energy -6.33 kcal/mol@LB@Hybridization Energy -11.1749 kcal/mol@LB@Unfolding Energy - mRNA 4.83937 kcal/mol@LB@Unfolding Energy - sRNA 0.00366414 kcal/mol@LB@@LB@Position - mRNA 31 -- 37@LB@Position - sRNA 66 -- 72@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 105 |
0.009074 |
0.2778 |
bsu03220 |
ycgO |
-6.59 |
0.539508 |
105 -- 111 |
67 -- 73 |
symporter |
|
_____________104_____112\n_____________|_______|\n5'-GAA...CCUGC_______UCCAU...GUG-3'\n______________GGGGGUG\n______________||||||:\n______________CCCCCAU\n3'-UUU...AACCG_______CGCGG...AUA-5'\n_____________|_______|\n_____________74______66\n |
105 -- 111 |
67 -- 73 |
-12.2711 kcal/mol |
3.65196 kcal/mol |
2.02624 kcal/mol |
104 112@LB@ | |@LB@5'-GAA...CCUGC UCCAU...GUG-3'@LB@ GGGGGUG@LB@ ||||||:@LB@ CCCCCAU@LB@3'-UUU...AACCG CGCGG...AUA-5'@LB@ | |@LB@ 74 66@LB@@LB@@LB@Energy -6.59 kcal/mol@LB@Hybridization Energy -12.2711 kcal/mol@LB@Unfolding Energy - mRNA 3.65196 kcal/mol@LB@Unfolding Energy - sRNA 2.02624 kcal/mol@LB@@LB@Position - mRNA 105 -- 111@LB@Position - sRNA 67 -- 73@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 67 -- 73@LB@ |
