31 |
0.001906 |
0.2067 |
b0198 |
metI |
-9.82 |
0.132421 |
237 -- 257 |
48 -- 68 |
DL-methionine transporter subunit |
|
_____________236____________________258\n_____________|______________________|\n5'-UCA...GUGGC__A__________C________ACCUU...CGG-3'\n______________GU_UGGGAAA_CG_UGGCAAUG\n______________||_|||:|||_|:_||||||||\n______________CA_ACCUUUU_GU_ACCGUUAC\n3'-UUU...AUAUA__________A__C________GUUAC...UUG-5'\n_____________|______________________|\n_____________69_____________________47\n |
251 -- 257 |
48 -- 54 |
-20.2902 kcal/mol |
6.26471 kcal/mol |
4.20468 kcal/mol |
236 258@LB@ | |@LB@5'-UCA...GUGGC A C ACCUU...CGG-3'@LB@ GU UGGGAAA CG UGGCAAUG@LB@ || |||:||| |: ||||||||@LB@ CA ACCUUUU GU ACCGUUAC@LB@3'-UUU...AUAUA A C GUUAC...UUG-5'@LB@ | |@LB@ 69 47@LB@@LB@@LB@Energy -9.82 kcal/mol@LB@Hybridization Energy -20.2902 kcal/mol@LB@Unfolding Energy - mRNA 6.26471 kcal/mol@LB@Unfolding Energy - sRNA 4.20468 kcal/mol@LB@@LB@Position - mRNA 237 -- 257@LB@Position - sRNA 48 -- 68@LB@Position Seed - mRNA 251 -- 257@LB@Position Seed - sRNA 48 -- 54@LB@ |
122 |
0.01263 |
0.3462 |
b0537 |
intD |
-10.49 |
0.096065 |
54 -- 80 |
48 -- 76 |
DLP12 prophage; putative phage integrase |
|
_____________53____________________________81\n_____________|_____________________________|\n5'-GAG...AUUGG____________________A________ACGCA...AAG-3'\n______________UUUUGUAU_UUGGGGAG_CA_UGGCGAUG\n______________||||:|||_||||::|:_||_||||:|||\n______________AAAAUAUA_AACCUUUU_GU_ACCGUUAC\n3'-UUU...ACAGA________C________A__C________GUUAC...UUG-5'\n_____________|_____________________________|\n_____________77____________________________47\n |
74 -- 80 |
48 -- 54 |
-25.3626 kcal/mol |
9.83015 kcal/mol |
5.0412 kcal/mol |
53 81@LB@ | |@LB@5'-GAG...AUUGG A ACGCA...AAG-3'@LB@ UUUUGUAU UUGGGGAG CA UGGCGAUG@LB@ ||||:||| ||||::|: || ||||:|||@LB@ AAAAUAUA AACCUUUU GU ACCGUUAC@LB@3'-UUU...ACAGA C A C GUUAC...UUG-5'@LB@ | |@LB@ 77 47@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -25.3626 kcal/mol@LB@Unfolding Energy - mRNA 9.83015 kcal/mol@LB@Unfolding Energy - sRNA 5.0412 kcal/mol@LB@@LB@Position - mRNA 54 -- 80@LB@Position - sRNA 48 -- 76@LB@Position Seed - mRNA 74 -- 80@LB@Position Seed - sRNA 48 -- 54@LB@ |
183 |
0.02285 |
0.4143 |
b3262 |
yhdJ |
-12.72 |
0.029953 |
3 -- 23 |
44 -- 69 |
DNA adenine methyltransferase SAM-dependent |
|
_____________2__________________________24\n_____________|__________________________|\n_________5'-CC__________________________ACACC...GUG-3'\n______________UGUUGGA____CA_UGGUGAUGCAAU\n______________|||||||____||_|||::|||||||\n______________ACAACCU____GU_ACCGUUACGUUA\n3'-UUU...AAUAU_______UUUA__C____________CCGGG...UUG-5'\n_____________|__________________________|\n_____________70_________________________43\n |
17 -- 23 |
44 -- 50 |
-23.8856 kcal/mol |
6.69358 kcal/mol |
4.47358 kcal/mol |
2 24@LB@ | |@LB@ 5'-CC ACACC...GUG-3'@LB@ UGUUGGA CA UGGUGAUGCAAU@LB@ ||||||| || |||::|||||||@LB@ ACAACCU GU ACCGUUACGUUA@LB@3'-UUU...AAUAU UUUA C CCGGG...UUG-5'@LB@ | |@LB@ 70 43@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -23.8856 kcal/mol@LB@Unfolding Energy - mRNA 6.69358 kcal/mol@LB@Unfolding Energy - sRNA 4.47358 kcal/mol@LB@@LB@Position - mRNA 3 -- 23@LB@Position - sRNA 44 -- 69@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 44 -- 50@LB@ |
93 |
0.008233 |
0.2977 |
b2669 |
stpA |
-8.51 |
0.236304 |
244 -- 255 |
39 -- 50 |
DNA binding protein nucleoid-associated |
|
_____________243__________256\n_____________|____________|\n5'-UUC...CCUCC____________GCGAA...UCA-3'\n______________GUGCGAUGGCUC\n______________:|||:|||||:|\n______________UACGUUACCGGG\n3'-UUU...ACCGU____________UUGUC...UUG-5'\n_____________|____________|\n_____________51___________38\n |
249 -- 255 |
39 -- 45 |
-19.1222 kcal/mol |
5.86982 kcal/mol |
4.73799 kcal/mol |
243 256@LB@ | |@LB@5'-UUC...CCUCC GCGAA...UCA-3'@LB@ GUGCGAUGGCUC@LB@ :|||:|||||:|@LB@ UACGUUACCGGG@LB@3'-UUU...ACCGU UUGUC...UUG-5'@LB@ | |@LB@ 51 38@LB@@LB@@LB@Energy -8.51 kcal/mol@LB@Hybridization Energy -19.1222 kcal/mol@LB@Unfolding Energy - mRNA 5.86982 kcal/mol@LB@Unfolding Energy - sRNA 4.73799 kcal/mol@LB@@LB@Position - mRNA 244 -- 255@LB@Position - sRNA 39 -- 50@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 39 -- 45@LB@ |
98 |
0.009218 |
0.3118 |
b3391 |
hofQ |
-10.83 |
0.081241 |
8 -- 57 |
7 -- 65 |
DNA catabolic putative fimbrial transporter |
|
_____________7_____________________________________________________________58\n_____________|_____________________________________________________________|\n____5'-CUAUCAG____UGG_________G____GC__A___U___UGU_________________________AAAGA...UAG-3'\n______________GGGA___UAG_GGCGA_GCGA__GC_UCA_CGG___AAUAAAA_____GAC_____GGGCA\n______________||:|___:||_|||:|_||:|__||_:||_|:|___|||||||_____|||_____:||||\n______________CCUU___GUC_CCGUU_CGUU__CG_GGU_GUC___UUAUUUU_____CUG_____UCCGU\n3'-UUU...UACAA____UUA___A_____A____AC______U___UU________AGACA___UUAUU_____AUAUUG-5'\n_____________|_____________________________________________________________|\n_____________66____________________________________________________________6\n |
43 -- 49 |
25 -- 31 |
-34.6984 kcal/mol |
11.715 kcal/mol |
12.1538 kcal/mol |
7 58@LB@ | |@LB@ 5'-CUAUCAG UGG G GC A U UGU AAAGA...UAG-3'@LB@ GGGA UAG GGCGA GCGA GC UCA CGG AAUAAAA GAC GGGCA@LB@ ||:| :|| |||:| ||:| || :|| |:| ||||||| ||| :||||@LB@ CCUU GUC CCGUU CGUU CG GGU GUC UUAUUUU CUG UCCGU@LB@3'-UUU...UACAA UUA A A AC U UU AGACA UUAUU AUAUUG-5'@LB@ | |@LB@ 66 6@LB@@LB@@LB@Energy -10.83 kcal/mol@LB@Hybridization Energy -34.6984 kcal/mol@LB@Unfolding Energy - mRNA 11.715 kcal/mol@LB@Unfolding Energy - sRNA 12.1538 kcal/mol@LB@@LB@Position - mRNA 8 -- 57@LB@Position - sRNA 7 -- 65@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 25 -- 31@LB@ |
46 |
0.003168 |
0.2306 |
b3066 |
dnaG |
-7.10 |
0.407270 |
188 -- 205 |
41 -- 63 |
DNA primase |
|
_____________187_____________________206\n_____________|_______________________|\n5'-ACC...UGCUA____________CU_________UGGAC...GCA-3'\n______________AAAAUCGG_GGC______AUGGC\n______________||||||:|_|||______|||||\n______________UUUUAGUC_CCG______UACCG\n3'-UUU...CAACC________A___UUACGU_____GGUUG...UUG-5'\n_____________|_______________________|\n_____________64______________________40\n |
189 -- 195 |
56 -- 62 |
-16.4791 kcal/mol |
5.10709 kcal/mol |
4.27657 kcal/mol |
187 206@LB@ | |@LB@5'-ACC...UGCUA CU UGGAC...GCA-3'@LB@ AAAAUCGG GGC AUGGC@LB@ ||||||:| ||| |||||@LB@ UUUUAGUC CCG UACCG@LB@3'-UUU...CAACC A UUACGU GGUUG...UUG-5'@LB@ | |@LB@ 64 40@LB@@LB@@LB@Energy -7.10 kcal/mol@LB@Hybridization Energy -16.4791 kcal/mol@LB@Unfolding Energy - mRNA 5.10709 kcal/mol@LB@Unfolding Energy - sRNA 4.27657 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 41 -- 63@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 56 -- 62@LB@ |
146 |
0.01679 |
0.3828 |
b2699 |
recA |
-5.90 |
0.590167 |
190 -- 206 |
40 -- 58 |
DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor |
|
_____________189_________________207\n_____________|___________________|\n5'-UGC...CAUGA___GA____A_________AUCGA...ACC-3'\n______________CAG__GUAA___AAUGGCU\n______________|||__|:||___||||||:\n______________GUC__CGUU___UUACCGG\n3'-UUU...UUUUA___AC____ACG_______GUUGU...UUG-5'\n_____________|___________________|\n_____________59__________________39\n |
200 -- 206 |
40 -- 46 |
-15.424 kcal/mol |
3.45581 kcal/mol |
6.06808 kcal/mol |
189 207@LB@ | |@LB@5'-UGC...CAUGA GA A AUCGA...ACC-3'@LB@ CAG GUAA AAUGGCU@LB@ ||| |:|| ||||||:@LB@ GUC CGUU UUACCGG@LB@3'-UUU...UUUUA AC ACG GUUGU...UUG-5'@LB@ | |@LB@ 59 39@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -15.424 kcal/mol@LB@Unfolding Energy - mRNA 3.45581 kcal/mol@LB@Unfolding Energy - sRNA 6.06808 kcal/mol@LB@@LB@Position - mRNA 190 -- 206@LB@Position - sRNA 40 -- 58@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 40 -- 46@LB@ |
12 |
0.0004505 |
0.1262 |
b3248 |
yhdE |
-11.12 |
0.070056 |
184 -- 205 |
1 -- 21 |
dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase |
|
_____________183_____________________206\n_____________|_______________________|\n5'-UUA...UUGCA______________UUC______UUCUC...AGC-3'\n______________GUG_CAAUAAAGGU___UAUGAC\n______________|||_|||||||||:___|||:||\n______________CAC_GUUAUUUCCG___AUAUUG\n3'-UUU...UUAGA___U__________U________-5'\n_____________|______________________|\n_____________22_____________________1\n |
190 -- 196 |
8 -- 14 |
-19.9684 kcal/mol |
4.43203 kcal/mol |
4.41334 kcal/mol |
183 206@LB@ | |@LB@5'-UUA...UUGCA UUC UUCUC...AGC-3'@LB@ GUG CAAUAAAGGU UAUGAC@LB@ ||| |||||||||: |||:||@LB@ CAC GUUAUUUCCG AUAUUG@LB@3'-UUU...UUAGA U U -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.12 kcal/mol@LB@Hybridization Energy -19.9684 kcal/mol@LB@Unfolding Energy - mRNA 4.43203 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 184 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 8 -- 14@LB@ |
4 |
6.145e-05 |
0.05167 |
b4217 |
ytfK |
-14.33 |
0.011783 |
150 -- 205 |
11 -- 68 |
DUF1107 family protein |
|
_____________149________________________________________________________________206\n_____________|__________________________________________________________________|\n5'-GAA...UAAUA______CC___________CC___CA___GUAAUAC______________________________AAUUU...AAU-3'\n______________GUUGGG__GAUU_GUGGCA__GCA__GGC_______UCAGCAGGAGAUA_________ACAAUGAA\n______________|||||:__:||:_||||||__|||__|||_______:||:|||:|:|||_________|||||:||\n______________CAACCU__UUAG_CACCGU__CGU__CCG_______GGUUGUCUUUUAU_________UGUUAUUU\n3'-UUU...AUAUA______U_____U______UA___UA_______________________UUUAGACAC________CCGUA...UUG-5'\n_____________|__________________________________________________________________|\n_____________69_________________________________________________________________10\n |
199 -- 205 |
11 -- 17 |
-43.2853 kcal/mol |
16.8726 kcal/mol |
12.0809 kcal/mol |
149 206@LB@ | |@LB@5'-GAA...UAAUA CC CC CA GUAAUAC AAUUU...AAU-3'@LB@ GUUGGG GAUU GUGGCA GCA GGC UCAGCAGGAGAUA ACAAUGAA@LB@ |||||: :||: |||||| ||| ||| :||:|||:|:||| |||||:||@LB@ CAACCU UUAG CACCGU CGU CCG GGUUGUCUUUUAU UGUUAUUU@LB@3'-UUU...AUAUA U U UA UA UUUAGACAC CCGUA...UUG-5'@LB@ | |@LB@ 69 10@LB@@LB@@LB@Energy -14.33 kcal/mol@LB@Hybridization Energy -43.2853 kcal/mol@LB@Unfolding Energy - mRNA 16.8726 kcal/mol@LB@Unfolding Energy - sRNA 12.0809 kcal/mol@LB@@LB@Position - mRNA 150 -- 205@LB@Position - sRNA 11 -- 68@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 11 -- 17@LB@ |
148 |
0.01733 |
0.3828 |
b1760 |
ynjH |
-7.42 |
0.362448 |
2 -- 64 |
11 -- 71 |
DUF1496 family protein |
|
_____________1________________________________________________________________65\n_____________|________________________________________________________________|\n__________5'-U_______UUUAU____U___CUUU______U_______UAUACCAUCAAGAA____________CAAGA...AAG-3'\n______________UAUGUUG_____GUCA_GUG____UGCAGU__UUCGAC______________UGUGACGGUAAG\n______________|||||||_____:|||_|||____||||:|__::|:||______________||||||::|||:\n______________AUACAAC_____UAGU_CAC____ACGUUA__GGGUUG______________ACACUGUUAUUU\n3'-UUU...AAAAU_______CUUU_________CGUU______CC______UCUUUUAUUUUAG_____________CCGUA...UUG-5'\n_____________|________________________________________________________________|\n_____________72_______________________________________________________________10\n |
58 -- 64 |
11 -- 17 |
-35.6179 kcal/mol |
16.0903 kcal/mol |
12.1045 kcal/mol |
1 65@LB@ | |@LB@ 5'-U UUUAU U CUUU U UAUACCAUCAAGAA CAAGA...AAG-3'@LB@ UAUGUUG GUCA GUG UGCAGU UUCGAC UGUGACGGUAAG@LB@ ||||||| :||| ||| ||||:| ::|:|| ||||||::|||:@LB@ AUACAAC UAGU CAC ACGUUA GGGUUG ACACUGUUAUUU@LB@3'-UUU...AAAAU CUUU CGUU CC UCUUUUAUUUUAG CCGUA...UUG-5'@LB@ | |@LB@ 72 10@LB@@LB@@LB@Energy -7.42 kcal/mol@LB@Hybridization Energy -35.6179 kcal/mol@LB@Unfolding Energy - mRNA 16.0903 kcal/mol@LB@Unfolding Energy - sRNA 12.1045 kcal/mol@LB@@LB@Position - mRNA 2 -- 64@LB@Position - sRNA 11 -- 71@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 11 -- 17@LB@ |