184 |
0.02285 |
0.4143 |
b4312 |
fimB |
-10.59 |
0.091292 |
169 -- 221 |
1 -- 58 |
tyrosine recombinase/inversion of on/off regulator of fimA |
|
_____________168________________________________________________________________222\n_____________|__________________________________________________________________|\n5'-AUG...ACAGC_____C___UC______UA_____G________________________AGAAUA____UG_____AAAAA...GUA-3'\n______________UAGUG_GCG__UGUAAU____UAA_GGAAAA___________ACGAUGA______AGGC__AUAAC\n______________:||||_||:__||:|||____:||_:|||||___________||:||:|______||||__|||||\n______________GUCAC_CGU__ACGUUA____GUU_UCUUUU___________UGUUAUU______UCCG__UAUUG\n3'-UUU...UUUUA_________U_______CCGG___G______AUUUUAGACAC_________________UA_____-5'\n_____________|_________________________________________________________________|\n_____________59________________________________________________________________1\n |
198 -- 204 |
12 -- 18 |
-31.4649 kcal/mol |
8.72248 kcal/mol |
12.1476 kcal/mol |
168 222@LB@ | |@LB@5'-AUG...ACAGC C UC UA G AGAAUA UG AAAAA...GUA-3'@LB@ UAGUG GCG UGUAAU UAA GGAAAA ACGAUGA AGGC AUAAC@LB@ :|||| ||: ||:||| :|| :||||| ||:||:| |||| |||||@LB@ GUCAC CGU ACGUUA GUU UCUUUU UGUUAUU UCCG UAUUG@LB@3'-UUU...UUUUA U CCGG G AUUUUAGACAC UA -5'@LB@ | |@LB@ 59 1@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -31.4649 kcal/mol@LB@Unfolding Energy - mRNA 8.72248 kcal/mol@LB@Unfolding Energy - sRNA 12.1476 kcal/mol@LB@@LB@Position - mRNA 169 -- 221@LB@Position - sRNA 1 -- 58@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 12 -- 18@LB@ |
27 |
0.001616 |
0.2012 |
b0085 |
murE |
-13.53 |
0.018874 |
165 -- 198 |
1 -- 33 |
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase |
|
_____________164_________________________________199\n_____________|___________________________________|\n5'-UGC...CGAUA_________________U___C______AGGG___AGGUG...CGG-3'\n______________AAAAU_GAAUUUGUGAU_AAU_AAGGCG____GAC\n______________|||||_:|||:|||||:_|||_|||||:____:||\n______________UUUUA_UUUAGACACUG_UUA_UUCCGU____UUG\n3'-UUU...UUGUC_____U_______________U______AUA____-5'\n_____________|__________________________________|\n_____________34_________________________________1\n |
174 -- 180 |
17 -- 23 |
-22.2929 kcal/mol |
3.71145 kcal/mol |
5.04823 kcal/mol |
164 199@LB@ | |@LB@5'-UGC...CGAUA U C AGGG AGGUG...CGG-3'@LB@ AAAAU GAAUUUGUGAU AAU AAGGCG GAC@LB@ ||||| :|||:|||||: ||| |||||: :||@LB@ UUUUA UUUAGACACUG UUA UUCCGU UUG@LB@3'-UUU...UUGUC U U AUA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -13.53 kcal/mol@LB@Hybridization Energy -22.2929 kcal/mol@LB@Unfolding Energy - mRNA 3.71145 kcal/mol@LB@Unfolding Energy - sRNA 5.04823 kcal/mol@LB@@LB@Position - mRNA 165 -- 198@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 17 -- 23@LB@ |
99 |
0.009334 |
0.3118 |
b0675 |
umpH |
-9.49 |
0.153954 |
143 -- 172 |
39 -- 66 |
UMP phosphatase |
|
_____________142____________________________173\n_____________|______________________________|\n5'-AGC...UUUGC__________A__U__UUUUA_______G_UUAUU...AUA-3'\n______________UGGAAAAUUA_UG_GC_____UAGUGGC_C\n______________||||||||:|_||_||_____:|:||||_|\n______________ACCUUUUAGU_AC_CG_____GUUACCG_G\n3'-UUU...AUACA__________C_____UUAC________G_UUGUC...UUG-5'\n_____________|______________________________|\n_____________67_____________________________38\n |
145 -- 151 |
58 -- 64 |
-25.171 kcal/mol |
9.00393 kcal/mol |
6.67256 kcal/mol |
142 173@LB@ | |@LB@5'-AGC...UUUGC A U UUUUA G UUAUU...AUA-3'@LB@ UGGAAAAUUA UG GC UAGUGGC C@LB@ ||||||||:| || || :|:|||| |@LB@ ACCUUUUAGU AC CG GUUACCG G@LB@3'-UUU...AUACA C UUAC G UUGUC...UUG-5'@LB@ | |@LB@ 67 38@LB@@LB@@LB@Energy -9.49 kcal/mol@LB@Hybridization Energy -25.171 kcal/mol@LB@Unfolding Energy - mRNA 9.00393 kcal/mol@LB@Unfolding Energy - sRNA 6.67256 kcal/mol@LB@@LB@Position - mRNA 143 -- 172@LB@Position - sRNA 39 -- 66@LB@Position Seed - mRNA 145 -- 151@LB@Position Seed - sRNA 58 -- 64@LB@ |
191 |
0.02382 |
0.4194 |
b4567 |
yjjZ |
-11.31 |
0.063816 |
288 -- 298 |
51 -- 61 |
uncharacterized protein |
|
_____________287_________299\n_____________|___________|\n5'-CGG...CGUCA___________GA-3'\n______________GAUCAGUGGCG\n______________:|||||||||:\n______________UUAGUCACCGU\n3'-UUU...ACCUU___________UACGU...UUG-5'\n_____________|___________|\n_____________62__________50\n |
292 -- 298 |
51 -- 57 |
-17.6489 kcal/mol |
3.61415 kcal/mol |
2.72961 kcal/mol |
287 299@LB@ | |@LB@5'-CGG...CGUCA GA-3'@LB@ GAUCAGUGGCG@LB@ :|||||||||:@LB@ UUAGUCACCGU@LB@3'-UUU...ACCUU UACGU...UUG-5'@LB@ | |@LB@ 62 50@LB@@LB@@LB@Energy -11.31 kcal/mol@LB@Hybridization Energy -17.6489 kcal/mol@LB@Unfolding Energy - mRNA 3.61415 kcal/mol@LB@Unfolding Energy - sRNA 2.72961 kcal/mol@LB@@LB@Position - mRNA 288 -- 298@LB@Position - sRNA 51 -- 61@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 51 -- 57@LB@ |
54 |
0.003913 |
0.237 |
b0387 |
yaiI |
-8.67 |
0.221647 |
168 -- 177 |
9 -- 18 |
UPF0178 family protein |
|
_____________167________178\n_____________|__________|\n5'-CAC...GCGAC__________AUUAC...CAA-3'\n______________ACAAUAGAGG\n______________||||||:|||\n______________UGUUAUUUCC\n3'-UUU...GACAC__________GUAUAUUG-5'\n_____________|__________|\n_____________19_________8\n |
171 -- 177 |
9 -- 15 |
-10.6786 kcal/mol |
1.38452 kcal/mol |
0.627418 kcal/mol |
167 178@LB@ | |@LB@5'-CAC...GCGAC AUUAC...CAA-3'@LB@ ACAAUAGAGG@LB@ ||||||:|||@LB@ UGUUAUUUCC@LB@3'-UUU...GACAC GUAUAUUG-5'@LB@ | |@LB@ 19 8@LB@@LB@@LB@Energy -8.67 kcal/mol@LB@Hybridization Energy -10.6786 kcal/mol@LB@Unfolding Energy - mRNA 1.38452 kcal/mol@LB@Unfolding Energy - sRNA 0.627418 kcal/mol@LB@@LB@Position - mRNA 168 -- 177@LB@Position - sRNA 9 -- 18@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 9 -- 15@LB@ |
5 |
0.0001064 |
0.07159 |
b1784 |
yeaH |
-10.63 |
0.089613 |
150 -- 205 |
1 -- 57 |
UPF0229 family protein |
|
_____________149________________________________________________________206\n_____________|__________________________________________________________|\n5'-UGU...UGAGA__C_____CA_______G_____UACAGUUGGCAAA___AGUACG_____________CUGGU...CGA-3'\n______________AG_GGCAA__CA__GGC_UAGCA_____________UGU______GGGGGCAUAUGAC\n______________||_|||||__||__|||_:|:||_____________|||______:::|||||||:||\n______________UC_CCGUU__GU__CCG_GUUGU_____________ACA______UUUCCGUAUAUUG\n3'-UUU...UUUAG__A_____AC__UA___G_____CUUUUAUUUUAG____CUGUUA_____________-5'\n_____________|_________________________________________________________|\n_____________58________________________________________________________1\n |
198 -- 204 |
2 -- 8 |
-36.8439 kcal/mol |
14.0882 kcal/mol |
12.1233 kcal/mol |
149 206@LB@ | |@LB@5'-UGU...UGAGA C CA G UACAGUUGGCAAA AGUACG CUGGU...CGA-3'@LB@ AG GGCAA CA GGC UAGCA UGU GGGGGCAUAUGAC@LB@ || ||||| || ||| :|:|| ||| :::|||||||:||@LB@ UC CCGUU GU CCG GUUGU ACA UUUCCGUAUAUUG@LB@3'-UUU...UUUAG A AC UA G CUUUUAUUUUAG CUGUUA -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -10.63 kcal/mol@LB@Hybridization Energy -36.8439 kcal/mol@LB@Unfolding Energy - mRNA 14.0882 kcal/mol@LB@Unfolding Energy - sRNA 12.1233 kcal/mol@LB@@LB@Position - mRNA 150 -- 205@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 2 -- 8@LB@ |
140 |
0.01599 |
0.3828 |
b0119 |
yacL |
-11.32 |
0.063485 |
266 -- 299 |
25 -- 57 |
UPF0231 family protein |
|
_____________265_________________________________300\n_____________|___________________________________|\n5'-GGU...CAUGA______CGG___C_________GA___________G-3'\n______________AGUGGU___GCA_UGGUUUAAU__AGA_GGUGAAA\n______________|||||:___|||_|||:::||:__|||_::|:|||\n______________UCACCG___CGU_ACCGGGUUG__UCU_UUAUUUU\n3'-UUU...UUUAG______UUA___U______________U_______AGACA...UUG-5'\n_____________|___________________________________|\n_____________58__________________________________24\n |
293 -- 299 |
25 -- 31 |
-25.5028 kcal/mol |
4.248 kcal/mol |
9.93955 kcal/mol |
265 300@LB@ | |@LB@5'-GGU...CAUGA CGG C GA G-3'@LB@ AGUGGU GCA UGGUUUAAU AGA GGUGAAA@LB@ |||||: ||| |||:::||: ||| ::|:|||@LB@ UCACCG CGU ACCGGGUUG UCU UUAUUUU@LB@3'-UUU...UUUAG UUA U U AGACA...UUG-5'@LB@ | |@LB@ 58 24@LB@@LB@@LB@Energy -11.32 kcal/mol@LB@Hybridization Energy -25.5028 kcal/mol@LB@Unfolding Energy - mRNA 4.248 kcal/mol@LB@Unfolding Energy - sRNA 9.93955 kcal/mol@LB@@LB@Position - mRNA 266 -- 299@LB@Position - sRNA 25 -- 57@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 25 -- 31@LB@ |
26 |
0.00144 |
0.1863 |
b4406 |
yaeP |
-8.75 |
0.213688 |
187 -- 204 |
2 -- 20 |
UPF0253 family protein |
|
_____________186_________________205\n_____________|___________________|\n5'-ACC...AGUGC_____G_____________AAAAA...UGC-3'\n______________UGACA__GAGGGCAUGUGG\n______________|||||__:|:|||||:|::\n______________ACUGU__UUUCCGUAUAUU\n3'-UUU...UAGAC_____UA____________G-5'\n_____________|___________________|\n_____________21__________________1\n |
197 -- 203 |
3 -- 9 |
-20.0716 kcal/mol |
7.09254 kcal/mol |
4.22649 kcal/mol |
186 205@LB@ | |@LB@5'-ACC...AGUGC G AAAAA...UGC-3'@LB@ UGACA GAGGGCAUGUGG@LB@ ||||| :|:|||||:|::@LB@ ACUGU UUUCCGUAUAUU@LB@3'-UUU...UAGAC UA G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -20.0716 kcal/mol@LB@Unfolding Energy - mRNA 7.09254 kcal/mol@LB@Unfolding Energy - sRNA 4.22649 kcal/mol@LB@@LB@Position - mRNA 187 -- 204@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 3 -- 9@LB@ |
147 |
0.01713 |
0.3828 |
b3354 |
yheU |
-14.93 |
0.008191 |
201 -- 276 |
7 -- 70 |
UPF0270 family protein |
|
_____________200_____________________________________________________________________________277\n_____________|_______________________________________________________________________________|\n5'-CUG...AAAUC______AU_____C_______GACCUCUCC_____AACGC________UU____GAAAGCUU____UUAC_________CCGAU...GUA-3'\n______________AUGUUG_____UC_GUGGCAA_________CCCGA_____UGGAAAAU__AAUU________UGUG____GUGAAGGCA\n______________||||||_____||_|||||||_________|||:|_____::||||||__|||:________||||____:|:||||||\n______________UACAAC_____AG_CACCGUU_________GGGUU_____GUCUUUUA__UUAG________ACAC____UAUUUCCGU\n3'-UUU...AAAUA______CUUUU__U_______ACGUUACC___________________UU________________UGU__________AUAUUG-5'\n_____________|_______________________________________________________________________________|\n_____________71______________________________________________________________________________6\n |
270 -- 276 |
7 -- 13 |
-40.9535 kcal/mol |
13.8654 kcal/mol |
12.1606 kcal/mol |
200 277@LB@ | |@LB@5'-CUG...AAAUC AU C GACCUCUCC AACGC UU GAAAGCUU UUAC CCGAU...GUA-3'@LB@ AUGUUG UC GUGGCAA CCCGA UGGAAAAU AAUU UGUG GUGAAGGCA@LB@ |||||| || ||||||| |||:| ::|||||| |||: |||| :|:||||||@LB@ UACAAC AG CACCGUU GGGUU GUCUUUUA UUAG ACAC UAUUUCCGU@LB@3'-UUU...AAAUA CUUUU U ACGUUACC UU UGU AUAUUG-5'@LB@ | |@LB@ 71 6@LB@@LB@@LB@Energy -14.93 kcal/mol@LB@Hybridization Energy -40.9535 kcal/mol@LB@Unfolding Energy - mRNA 13.8654 kcal/mol@LB@Unfolding Energy - sRNA 12.1606 kcal/mol@LB@@LB@Position - mRNA 201 -- 276@LB@Position - sRNA 7 -- 70@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 7 -- 13@LB@ |
126 |
0.01341 |
0.3578 |
b3572 |
avtA |
-7.69 |
0.327921 |
259 -- 267 |
58 -- 66 |
valine-pyruvate aminotransferase; transaminase C; alanine-valine transaminase |
|
_____________258_______268\n_____________|_________|\n5'-UCG...GUUGA_________UGAAC...UUA-3'\n______________UGGAAGAUC\n______________|||||:|||\n______________ACCUUUUAG\n3'-UUU...AUACA_________UCACC...UUG-5'\n_____________|_________|\n_____________67________57\n |
261 -- 267 |
58 -- 64 |
-10.9576 kcal/mol |
2.42155 kcal/mol |
0.843879 kcal/mol |
258 268@LB@ | |@LB@5'-UCG...GUUGA UGAAC...UUA-3'@LB@ UGGAAGAUC@LB@ |||||:|||@LB@ ACCUUUUAG@LB@3'-UUU...AUACA UCACC...UUG-5'@LB@ | |@LB@ 67 57@LB@@LB@@LB@Energy -7.69 kcal/mol@LB@Hybridization Energy -10.9576 kcal/mol@LB@Unfolding Energy - mRNA 2.42155 kcal/mol@LB@Unfolding Energy - sRNA 0.843879 kcal/mol@LB@@LB@Position - mRNA 259 -- 267@LB@Position - sRNA 58 -- 66@LB@Position Seed - mRNA 261 -- 267@LB@Position Seed - sRNA 58 -- 64@LB@ |