173 |
0.02087 |
0.4033 |
b2239 |
glpQ |
-12.95 |
0.026326 |
256 -- 274 |
41 -- 66 |
periplasmic glycerophosphodiester phosphodiesterase |
|
_____________255________________________275\n_____________|__________________________|\n5'-CGG...AGUCA__________________________GGCGG...UCA-3'\n______________UGGGAA_______GCAGUGCAAUGGC\n______________|||:||_______|||:|||||||||\n______________ACCUUU_______CGUUACGUUACCG\n3'-UUU...AUACA______UAGUCAC_____________GGUUG...UUG-5'\n_____________|__________________________|\n_____________67_________________________40\n |
268 -- 274 |
41 -- 47 |
-26.6029 kcal/mol |
7.82977 kcal/mol |
5.82355 kcal/mol |
255 275@LB@ | |@LB@5'-CGG...AGUCA GGCGG...UCA-3'@LB@ UGGGAA GCAGUGCAAUGGC@LB@ |||:|| |||:|||||||||@LB@ ACCUUU CGUUACGUUACCG@LB@3'-UUU...AUACA UAGUCAC GGUUG...UUG-5'@LB@ | |@LB@ 67 40@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -26.6029 kcal/mol@LB@Unfolding Energy - mRNA 7.82977 kcal/mol@LB@Unfolding Energy - sRNA 5.82355 kcal/mol@LB@@LB@Position - mRNA 256 -- 274@LB@Position - sRNA 41 -- 66@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 41 -- 47@LB@ |
15 |
0.0005657 |
0.1268 |
b3715 |
yieH |
-7.91 |
0.301098 |
195 -- 204 |
4 -- 13 |
phosphoenolpyruvate and 6-phosphogluconate phosphatase |
|
_____________194________205\n_____________|__________|\n5'-CUG...AAAGG__________CCCGG...UUG-3'\n______________AAAGGCAUGU\n______________||||||||:|\n______________UUUCCGUAUA\n3'-UUU...UGUUA__________UUG-5'\n_____________|__________|\n_____________14_________3\n |
198 -- 204 |
4 -- 10 |
-12.382 kcal/mol |
1.66065 kcal/mol |
2.80714 kcal/mol |
194 205@LB@ | |@LB@5'-CUG...AAAGG CCCGG...UUG-3'@LB@ AAAGGCAUGU@LB@ ||||||||:|@LB@ UUUCCGUAUA@LB@3'-UUU...UGUUA UUG-5'@LB@ | |@LB@ 14 3@LB@@LB@@LB@Energy -7.91 kcal/mol@LB@Hybridization Energy -12.382 kcal/mol@LB@Unfolding Energy - mRNA 1.66065 kcal/mol@LB@Unfolding Energy - sRNA 2.80714 kcal/mol@LB@@LB@Position - mRNA 195 -- 204@LB@Position - sRNA 4 -- 13@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 4 -- 10@LB@ |
91 |
0.007817 |
0.2889 |
b3380 |
yhfW |
-10.82 |
0.081759 |
179 -- 205 |
41 -- 67 |
phosphopentomutase-related metalloenzyme superfamily protein |
|
_____________178_________________________206\n_____________|___________________________|\n5'-CUC...CAGUC_______C__UC___G__C________GCGAU...GUG-3'\n______________UUGGAAA_UC__UGG_GG_GUAAUGGC\n______________|||||||_||__|||_::_|:||||||\n______________AACCUUU_AG__ACC_UU_CGUUACCG\n3'-UUU...UAUAC_______U__UC___G__A________GGUUG...UUG-5'\n_____________|___________________________|\n_____________68__________________________40\n |
199 -- 205 |
41 -- 47 |
-26.7792 kcal/mol |
10.1319 kcal/mol |
5.83043 kcal/mol |
178 206@LB@ | |@LB@5'-CUC...CAGUC C UC G C GCGAU...GUG-3'@LB@ UUGGAAA UC UGG GG GUAAUGGC@LB@ ||||||| || ||| :: |:||||||@LB@ AACCUUU AG ACC UU CGUUACCG@LB@3'-UUU...UAUAC U UC G A GGUUG...UUG-5'@LB@ | |@LB@ 68 40@LB@@LB@@LB@Energy -10.82 kcal/mol@LB@Hybridization Energy -26.7792 kcal/mol@LB@Unfolding Energy - mRNA 10.1319 kcal/mol@LB@Unfolding Energy - sRNA 5.83043 kcal/mol@LB@@LB@Position - mRNA 179 -- 205@LB@Position - sRNA 41 -- 67@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 41 -- 47@LB@ |
188 |
0.02326 |
0.4145 |
b2501 |
ppk |
-10.84 |
0.080977 |
186 -- 203 |
48 -- 65 |
polyphosphate kinase component of RNA degradosome |
|
_____________185________________204\n_____________|__________________|\n5'-CGC...AAAAC____UAAA__________GGUCA...UUG-3'\n______________GGAG____AGUGGUAAUG\n______________|||:____|||||:||||\n______________CCUU____UCACCGUUAC\n3'-UUU...UACAA____UUAG__________GUUAC...UUG-5'\n_____________|__________________|\n_____________66_________________47\n |
197 -- 203 |
48 -- 54 |
-18.775 kcal/mol |
3.93073 kcal/mol |
4.00814 kcal/mol |
185 204@LB@ | |@LB@5'-CGC...AAAAC UAAA GGUCA...UUG-3'@LB@ GGAG AGUGGUAAUG@LB@ |||: |||||:||||@LB@ CCUU UCACCGUUAC@LB@3'-UUU...UACAA UUAG GUUAC...UUG-5'@LB@ | |@LB@ 66 47@LB@@LB@@LB@Energy -10.84 kcal/mol@LB@Hybridization Energy -18.775 kcal/mol@LB@Unfolding Energy - mRNA 3.93073 kcal/mol@LB@Unfolding Energy - sRNA 4.00814 kcal/mol@LB@@LB@Position - mRNA 186 -- 203@LB@Position - sRNA 48 -- 65@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 48 -- 54@LB@ |
96 |
0.009004 |
0.3118 |
b3981 |
secE |
-8.82 |
0.207803 |
253 -- 270 |
42 -- 57 |
preprotein translocase membrane subunit |
|
_____________252________________271\n_____________|__________________|\n5'-UAA...GAUGA_____GUCGU________CAUUG...ACU-3'\n______________AGUGG_____UGUGGUGG\n______________|||||_____||:::|||\n______________UCACC_____ACGUUACC\n3'-UUU...UUUAG_____GUU__________GGGUU...UUG-5'\n_____________|__________________|\n_____________58_________________41\n |
264 -- 270 |
42 -- 48 |
-15.0916 kcal/mol |
2.64473 kcal/mol |
3.62906 kcal/mol |
252 271@LB@ | |@LB@5'-UAA...GAUGA GUCGU CAUUG...ACU-3'@LB@ AGUGG UGUGGUGG@LB@ ||||| ||:::|||@LB@ UCACC ACGUUACC@LB@3'-UUU...UUUAG GUU GGGUU...UUG-5'@LB@ | |@LB@ 58 41@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -15.0916 kcal/mol@LB@Unfolding Energy - mRNA 2.64473 kcal/mol@LB@Unfolding Energy - sRNA 3.62906 kcal/mol@LB@@LB@Position - mRNA 253 -- 270@LB@Position - sRNA 42 -- 57@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 42 -- 48@LB@ |
11 |
0.000438 |
0.1262 |
b0467 |
priC |
-14.72 |
0.009297 |
1 -- 37 |
32 -- 65 |
primosomal replication protein N'' |
|
______________1____________________________________38\n______________|____________________________________|\n___________5'-______GAACG_____A___CCA___CG_________UAAAC...GUU-3'\n______________GGGGAA_____GGCAA_GCA___GGC__CCAGCAGGA\n______________||::||_____|||||_|||___|||__|||:|||:|\n______________CCUUUU_____CCGUU_CGU___CCG__GGUUGUCUU\n3'-UUU...UACAA______AGUCA_____A___UA_______________UUAUU...UUG-5'\n_____________|_____________________________________|\n_____________66____________________________________31\n |
30 -- 36 |
33 -- 39 |
-34.0772 kcal/mol |
8.3902 kcal/mol |
10.9649 kcal/mol |
1 38@LB@ | |@LB@ 5'- GAACG A CCA CG UAAAC...GUU-3'@LB@ GGGGAA GGCAA GCA GGC CCAGCAGGA@LB@ ||::|| ||||| ||| ||| |||:|||:|@LB@ CCUUUU CCGUU CGU CCG GGUUGUCUU@LB@3'-UUU...UACAA AGUCA A UA UUAUU...UUG-5'@LB@ | |@LB@ 66 31@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -34.0772 kcal/mol@LB@Unfolding Energy - mRNA 8.3902 kcal/mol@LB@Unfolding Energy - sRNA 10.9649 kcal/mol@LB@@LB@Position - mRNA 1 -- 37@LB@Position - sRNA 32 -- 65@LB@Position Seed - mRNA 30 -- 36@LB@Position Seed - sRNA 33 -- 39@LB@ |
172 |
0.02065 |
0.4033 |
b1015 |
putP |
-10.70 |
0.086688 |
188 -- 205 |
52 -- 67 |
proline:sodium symporter |
|
_____________187________________206\n_____________|__________________|\n5'-AGA...AUUUU_______CU____A____UAUUA...ACG-3'\n______________UUGGAGA__UUAG_UGGC\n______________|||||:|__|:||_||||\n______________AACCUUU__AGUC_ACCG\n3'-UUU...UAUAC_______U__________UUACG...UUG-5'\n_____________|__________________|\n_____________68_________________51\n |
188 -- 194 |
61 -- 67 |
-15.9795 kcal/mol |
2.37428 kcal/mol |
2.90583 kcal/mol |
187 206@LB@ | |@LB@5'-AGA...AUUUU CU A UAUUA...ACG-3'@LB@ UUGGAGA UUAG UGGC@LB@ |||||:| |:|| ||||@LB@ AACCUUU AGUC ACCG@LB@3'-UUU...UAUAC U UUACG...UUG-5'@LB@ | |@LB@ 68 51@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -15.9795 kcal/mol@LB@Unfolding Energy - mRNA 2.37428 kcal/mol@LB@Unfolding Energy - sRNA 2.90583 kcal/mol@LB@@LB@Position - mRNA 188 -- 205@LB@Position - sRNA 52 -- 67@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 61 -- 67@LB@ |
186 |
0.02292 |
0.4143 |
b2717 |
hycI |
-8.63 |
0.225035 |
220 -- 254 |
38 -- 70 |
protease involved in processing C-terminal end of HycE |
|
_____________219___________________________________255\n_____________|_____________________________________|\n5'-AGC...ACUCU_______C__UAG__UGAUG______________G__GGUCC...ACU-3'\n______________GUGUUGG_AA___CA_____GGCGAUG__AUGGC_CA\n______________:||||||_||___||_____|||:|||__|||||_||\n______________UACAACC_UU___GU_____CCGUUAC__UACCG_GU\n3'-UUU...AAAUA__________UUA__CA__________GU_____G__UGUCU...UUG-5'\n_____________|_____________________________________|\n_____________71____________________________________37\n |
240 -- 246 |
48 -- 54 |
-27.127 kcal/mol |
11.1995 kcal/mol |
7.29667 kcal/mol |
219 255@LB@ | |@LB@5'-AGC...ACUCU C UAG UGAUG G GGUCC...ACU-3'@LB@ GUGUUGG AA CA GGCGAUG AUGGC CA@LB@ :|||||| || || |||:||| ||||| ||@LB@ UACAACC UU GU CCGUUAC UACCG GU@LB@3'-UUU...AAAUA UUA CA GU G UGUCU...UUG-5'@LB@ | |@LB@ 71 37@LB@@LB@@LB@Energy -8.63 kcal/mol@LB@Hybridization Energy -27.127 kcal/mol@LB@Unfolding Energy - mRNA 11.1995 kcal/mol@LB@Unfolding Energy - sRNA 7.29667 kcal/mol@LB@@LB@Position - mRNA 220 -- 254@LB@Position - sRNA 38 -- 70@LB@Position Seed - mRNA 240 -- 246@LB@Position Seed - sRNA 48 -- 54@LB@ |
3 |
3.498e-05 |
0.03921 |
b4255 |
rraB |
-13.36 |
0.020838 |
142 -- 156 |
41 -- 54 |
protein inhibitor of RNase E |
|
_____________141_____________157\n_____________|_______________|\n5'-GAG...GUGGA_______U_______GUGUG...CCA-3'\n______________GGCAAUG_CAGUGGU\n______________|||||||_||:|||:\n______________CCGUUAC_GUUACCG\n3'-UUU...AGUCA_______________GGUUG...UUG-5'\n_____________|_______________|\n_____________55______________40\n |
150 -- 156 |
41 -- 47 |
-21.65 kcal/mol |
4.39843 kcal/mol |
3.89026 kcal/mol |
141 157@LB@ | |@LB@5'-GAG...GUGGA U GUGUG...CCA-3'@LB@ GGCAAUG CAGUGGU@LB@ ||||||| ||:|||:@LB@ CCGUUAC GUUACCG@LB@3'-UUU...AGUCA GGUUG...UUG-5'@LB@ | |@LB@ 55 40@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -21.65 kcal/mol@LB@Unfolding Energy - mRNA 4.39843 kcal/mol@LB@Unfolding Energy - sRNA 3.89026 kcal/mol@LB@@LB@Position - mRNA 142 -- 156@LB@Position - sRNA 41 -- 54@LB@Position Seed - mRNA 150 -- 156@LB@Position Seed - sRNA 41 -- 47@LB@ |
190 |
0.0237 |
0.4194 |
b0428 |
cyoE |
-16.93 |
0.002220 |
1 -- 26 |
41 -- 65 |
protoheme IX farnesyltransferase |
|
______________1__________________________27\n______________|__________________________|\n___________5'-____C____C________G________ACAGG...GCA-3'\n______________GGAA_AAUC__UGGCAAU_GCAGUGGU\n______________||||_||||__|||||||_|||:|||:\n______________CCUU_UUAG__ACCGUUA_CGUUACCG\n3'-UUU...UACAA_________UC________________GGUUG...UUG-5'\n_____________|___________________________|\n_____________66__________________________40\n |
20 -- 26 |
41 -- 47 |
-29.3415 kcal/mol |
6.59984 kcal/mol |
5.80973 kcal/mol |
1 27@LB@ | |@LB@ 5'- C C G ACAGG...GCA-3'@LB@ GGAA AAUC UGGCAAU GCAGUGGU@LB@ |||| |||| ||||||| |||:|||:@LB@ CCUU UUAG ACCGUUA CGUUACCG@LB@3'-UUU...UACAA UC GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -16.93 kcal/mol@LB@Hybridization Energy -29.3415 kcal/mol@LB@Unfolding Energy - mRNA 6.59984 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 1 -- 26@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 41 -- 47@LB@ |