116 |
0.0115 |
0.3326 |
b3770 |
ilvE |
-6.73 |
0.460342 |
227 -- 277 |
1 -- 67 |
branched-chain amino acid aminotransferase |
|
_____________226__________________________________________________________________278\n_____________|____________________________________________________________________|\n5'-UUU...UACAU____U______A___G______________C_____________________CG____U_________GUCGC...GCA-3'\n______________UUGG____UCA_UGG_GA___GAUGGUUCG_UGGGAA___________GACG__AAGG_GCAUGUGAU\n______________||||____|||_|||_:|___:||||::|:_::|:||___________|||:__||:|_||||:|:|:\n______________AACC____AGU_ACC_UU___UUACCGGGU_GUCUUU___________CUGU__UUUC_CGUAUAUUG\n3'-UUU...UAUAC____UUUU___C___G__ACG_________U______UAUUUUAGACA____UA______________-5'\n_____________|___________________________________________________________________|\n_____________68__________________________________________________________________1\n |
269 -- 275 |
3 -- 9 |
-35.2937 kcal/mol |
16.4013 kcal/mol |
12.1612 kcal/mol |
226 278@LB@ | |@LB@5'-UUU...UACAU U A G C CG U GUCGC...GCA-3'@LB@ UUGG UCA UGG GA GAUGGUUCG UGGGAA GACG AAGG GCAUGUGAU@LB@ |||| ||| ||| :| :||||::|: ::|:|| |||: ||:| ||||:|:|:@LB@ AACC AGU ACC UU UUACCGGGU GUCUUU CUGU UUUC CGUAUAUUG@LB@3'-UUU...UAUAC UUUU C G ACG U UAUUUUAGACA UA -5'@LB@ | |@LB@ 68 1@LB@@LB@@LB@Energy -6.73 kcal/mol@LB@Hybridization Energy -35.2937 kcal/mol@LB@Unfolding Energy - mRNA 16.4013 kcal/mol@LB@Unfolding Energy - sRNA 12.1612 kcal/mol@LB@@LB@Position - mRNA 227 -- 277@LB@Position - sRNA 1 -- 67@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 3 -- 9@LB@ |
36 |
0.002273 |
0.2088 |
b4138 |
dcuA |
-11.14 |
0.069498 |
259 -- 284 |
41 -- 65 |
C4-dicarboxylate antiporter |
|
_____________258__________________________285\n_____________|____________________________|\n5'-AAC...AUUGG_______A___AUU___UU_________GGAUU...UGG-3'\n______________GGGGAAU_GGU___GGU__UGCA__GGC\n______________||::|||_:||___||:__||||__|||\n______________CCUUUUA_UCA___CCG__ACGU__CCG\n3'-UUU...UACAA_______G_________UU____UA___GGUUG...UUG-5'\n_____________|____________________________|\n_____________66___________________________40\n |
259 -- 265 |
59 -- 65 |
-20.3442 kcal/mol |
3.39574 kcal/mol |
5.80973 kcal/mol |
258 285@LB@ | |@LB@5'-AAC...AUUGG A AUU UU GGAUU...UGG-3'@LB@ GGGGAAU GGU GGU UGCA GGC@LB@ ||::||| :|| ||: |||| |||@LB@ CCUUUUA UCA CCG ACGU CCG@LB@3'-UUU...UACAA G UU UA GGUUG...UUG-5'@LB@ | |@LB@ 66 40@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -20.3442 kcal/mol@LB@Unfolding Energy - mRNA 3.39574 kcal/mol@LB@Unfolding Energy - sRNA 5.80973 kcal/mol@LB@@LB@Position - mRNA 259 -- 284@LB@Position - sRNA 41 -- 65@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 59 -- 65@LB@ |
134 |
0.01498 |
0.3759 |
b3388 |
damX |
-9.22 |
0.174550 |
186 -- 204 |
42 -- 59 |
cell division protein that binds to the septal ring |
|
_____________185__________________205\n_____________|____________________|\n5'-GGG...ACCUU_____________UA_____AUGAA...AAC-3'\n______________UUAGUGG_GGUGU__AAUGG\n______________|:|||||_::||:__|||||\n______________AGUCACC_UUACG__UUACC\n3'-UUU...CUUUU_______G____________GGGUU...UUG-5'\n_____________|____________________|\n_____________60___________________41\n |
186 -- 192 |
53 -- 59 |
-16.4488 kcal/mol |
3.53707 kcal/mol |
3.69565 kcal/mol |
185 205@LB@ | |@LB@5'-GGG...ACCUU UA AUGAA...AAC-3'@LB@ UUAGUGG GGUGU AAUGG@LB@ |:||||| ::||: |||||@LB@ AGUCACC UUACG UUACC@LB@3'-UUU...CUUUU G GGGUU...UUG-5'@LB@ | |@LB@ 60 41@LB@@LB@@LB@Energy -9.22 kcal/mol@LB@Hybridization Energy -16.4488 kcal/mol@LB@Unfolding Energy - mRNA 3.53707 kcal/mol@LB@Unfolding Energy - sRNA 3.69565 kcal/mol@LB@@LB@Position - mRNA 186 -- 204@LB@Position - sRNA 42 -- 59@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 53 -- 59@LB@ |
87 |
0.007653 |
0.2889 |
b1881 |
cheZ |
-13.56 |
0.018568 |
164 -- 190 |
2 -- 28 |
chemotaxis regulator protein phosphatase for CheY |
|
_____________163_________________________191\n_____________|___________________________|\n5'-AUU...UCAAC_______U___G__ACU__________GGAUG...GGG-3'\n______________AAAAUCU_UGA_AA___GGGCAUGUGA\n______________|||||||_|||_||___:|||||:|:|\n______________UUUUAGA_ACU_UU___UCCGUAUAUU\n3'-UUU...UUUUA_______C___G__AUU__________G-5'\n_____________|___________________________|\n_____________29__________________________1\n |
183 -- 189 |
3 -- 9 |
-22.696 kcal/mol |
4.24203 kcal/mol |
4.89261 kcal/mol |
163 191@LB@ | |@LB@5'-AUU...UCAAC U G ACU GGAUG...GGG-3'@LB@ AAAAUCU UGA AA GGGCAUGUGA@LB@ ||||||| ||| || :|||||:|:|@LB@ UUUUAGA ACU UU UCCGUAUAUU@LB@3'-UUU...UUUUA C G AUU G-5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -13.56 kcal/mol@LB@Hybridization Energy -22.696 kcal/mol@LB@Unfolding Energy - mRNA 4.24203 kcal/mol@LB@Unfolding Energy - sRNA 4.89261 kcal/mol@LB@@LB@Position - mRNA 164 -- 190@LB@Position - sRNA 2 -- 28@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 3 -- 9@LB@ |
6 |
0.0002023 |
0.1081 |
b1884 |
cheR |
-8.31 |
0.257615 |
184 -- 205 |
1 -- 21 |
chemotaxis regulator protein-glutamate methyltransferase |
|
_____________183____________________206\n_____________|______________________|\n5'-GCC...CUGAA_____UGA_______C______UUCAU...UGA-3'\n______________GUGAU___GAAGGCG_UAUGAC\n______________||||:___:|||||:_|||:||\n______________CACUG___UUUCCGU_AUAUUG\n3'-UUU...UUAGA_____UUA______________-5'\n_____________|_____________________|\n_____________22____________________1\n |
192 -- 198 |
7 -- 13 |
-19.9838 kcal/mol |
7.26541 kcal/mol |
4.41334 kcal/mol |
183 206@LB@ | |@LB@5'-GCC...CUGAA UGA C UUCAU...UGA-3'@LB@ GUGAU GAAGGCG UAUGAC@LB@ ||||: :|||||: |||:||@LB@ CACUG UUUCCGU AUAUUG@LB@3'-UUU...UUAGA UUA -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -8.31 kcal/mol@LB@Hybridization Energy -19.9838 kcal/mol@LB@Unfolding Energy - mRNA 7.26541 kcal/mol@LB@Unfolding Energy - sRNA 4.41334 kcal/mol@LB@@LB@Position - mRNA 184 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
25 |
0.001369 |
0.1841 |
b2599 |
pheA |
-10.09 |
0.116571 |
180 -- 205 |
1 -- 20 |
chorismate mutase and prephenate dehydratase P-protein |
|
_____________179________________________206\n_____________|__________________________|\n5'-UGA...UUUAU______CAA_______ACAC______AUCGG...UCG-3'\n______________UGAUAA___AAAGGCA____UAUGAC\n______________|||:||___|||||||____|||:||\n______________ACUGUU___UUUCCGU____AUAUUG\n3'-UUU...UAGAC______A___________________-5'\n_____________|_________________________|\n_____________21________________________1\n |
189 -- 195 |
7 -- 13 |
-16.49 kcal/mol |
2.17136 kcal/mol |
4.22784 kcal/mol |
179 206@LB@ | |@LB@5'-UGA...UUUAU CAA ACAC AUCGG...UCG-3'@LB@ UGAUAA AAAGGCA UAUGAC@LB@ |||:|| ||||||| |||:||@LB@ ACUGUU UUUCCGU AUAUUG@LB@3'-UUU...UAGAC A -5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -16.49 kcal/mol@LB@Unfolding Energy - mRNA 2.17136 kcal/mol@LB@Unfolding Energy - sRNA 4.22784 kcal/mol@LB@@LB@Position - mRNA 180 -- 205@LB@Position - sRNA 1 -- 20@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 7 -- 13@LB@ |
61 |
0.004706 |
0.2539 |
b3713 |
chrR |
-11.93 |
0.045896 |
122 -- 163 |
8 -- 58 |
chromate reductase Class I flavoprotein |
|
_____________121____________________________________________________164\n_____________|______________________________________________________|\n5'-ACG...CCUAC___CC__A_______UUUU_____________________CU___C________UUUUU...CGA-3'\n______________CAG__GG_UGAUGCG____GCCCAAC___________UCU___AC_GUGAAGGC\n______________|||__||_::||||:____|||||||___________|||___||_:|:|||||\n______________GUC__CC_GUUACGU____CGGGUUG___________AGA___UG_UAUUUCCG\n3'-UUU...UUUUA___A___________UAC________UCUUUUAUUUU___CAC__U________UAUAUUG-5'\n_____________|______________________________________________________|\n_____________59_____________________________________________________7\n |
157 -- 163 |
8 -- 14 |
-33.8478 kcal/mol |
9.79541 kcal/mol |
12.1181 kcal/mol |
121 164@LB@ | |@LB@5'-ACG...CCUAC CC A UUUU CU C UUUUU...CGA-3'@LB@ CAG GG UGAUGCG GCCCAAC UCU AC GUGAAGGC@LB@ ||| || ::||||: ||||||| ||| || :|:|||||@LB@ GUC CC GUUACGU CGGGUUG AGA UG UAUUUCCG@LB@3'-UUU...UUUUA A UAC UCUUUUAUUUU CAC U UAUAUUG-5'@LB@ | |@LB@ 59 7@LB@@LB@@LB@Energy -11.93 kcal/mol@LB@Hybridization Energy -33.8478 kcal/mol@LB@Unfolding Energy - mRNA 9.79541 kcal/mol@LB@Unfolding Energy - sRNA 12.1181 kcal/mol@LB@@LB@Position - mRNA 122 -- 163@LB@Position - sRNA 8 -- 58@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 8 -- 14@LB@ |
20 |
0.0008987 |
0.1511 |
b2597 |
raiA |
-11.08 |
0.071670 |
189 -- 211 |
11 -- 33 |
cold shock protein associated with 30S ribosomal subunit |
|
_____________188_____________________212\n_____________|_______________________|\n5'-GCG...GACAA____________A__________CAUUA...AUC-3'\n______________GAGGUAAAAUUU_UGACAAUGAA\n______________:|::||||||:|_|||||||:||\n______________UUUUAUUUUAGA_ACUGUUAUUU\n3'-UUU...UUGUC____________C__________CCGUA...UUG-5'\n_____________|_______________________|\n_____________34______________________10\n |
205 -- 211 |
11 -- 17 |
-19.0558 kcal/mol |
3.03608 kcal/mol |
4.94152 kcal/mol |
188 212@LB@ | |@LB@5'-GCG...GACAA A CAUUA...AUC-3'@LB@ GAGGUAAAAUUU UGACAAUGAA@LB@ :|::||||||:| |||||||:||@LB@ UUUUAUUUUAGA ACUGUUAUUU@LB@3'-UUU...UUGUC C CCGUA...UUG-5'@LB@ | |@LB@ 34 10@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -19.0558 kcal/mol@LB@Unfolding Energy - mRNA 3.03608 kcal/mol@LB@Unfolding Energy - sRNA 4.94152 kcal/mol@LB@@LB@Position - mRNA 189 -- 211@LB@Position - sRNA 11 -- 33@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 11 -- 17@LB@ |
18 |
0.0007704 |
0.1438 |
b4526 |
ydaE |
-7.35 |
0.372707 |
186 -- 222 |
21 -- 54 |
conserved protein Rac prophage |
|
_____________185___________________________________223\n_____________|_____________________________________|\n5'-ACU...GUAAA_____A__C_____GA____UA____________G__CUUAC...UAU-3'\n______________GGCGG_GU_AUGGU__UGAC__AGAAAAUAAAAU_UG\n______________|||::_|:_||||:__::||__||||||||||||_||\n______________CCGUU_CG_UACCG__GUUG__UCUUUUAUUUUA_AC\n3'-UUU...AGUCA_____A__U_____G___________________G__ACUGU...UUG-5'\n_____________|_____________________________________|\n_____________55____________________________________20\n |
212 -- 218 |
25 -- 31 |
-28.7009 kcal/mol |
12.2907 kcal/mol |
9.06413 kcal/mol |
185 223@LB@ | |@LB@5'-ACU...GUAAA A C GA UA G CUUAC...UAU-3'@LB@ GGCGG GU AUGGU UGAC AGAAAAUAAAAU UG@LB@ |||:: |: ||||: ::|| |||||||||||| ||@LB@ CCGUU CG UACCG GUUG UCUUUUAUUUUA AC@LB@3'-UUU...AGUCA A U G G ACUGU...UUG-5'@LB@ | |@LB@ 55 20@LB@@LB@@LB@Energy -7.35 kcal/mol@LB@Hybridization Energy -28.7009 kcal/mol@LB@Unfolding Energy - mRNA 12.2907 kcal/mol@LB@Unfolding Energy - sRNA 9.06413 kcal/mol@LB@@LB@Position - mRNA 186 -- 222@LB@Position - sRNA 21 -- 54@LB@Position Seed - mRNA 212 -- 218@LB@Position Seed - sRNA 25 -- 31@LB@ |
40 |
0.00261 |
0.2088 |
b3008 |
metC |
-11.48 |
0.058180 |
224 -- 274 |
11 -- 59 |
cystathionine beta-lyase PLP-dependent |
|
_____________223___________________________________________________275\n_____________|_____________________________________________________|\n5'-CGA...GAUAC___AC____G__________A_G_____A______CAC___C_GC________UAGCG...CGC-3'\n______________UCA__UGGU_AAUGCA__GG_C_CAGCA_AAAAUA___UCU_G__GCGGUAAA\n______________|||__|||:_||||||__||_|_||:||_||||||___|||_|__:|::||||\n______________AGU__ACCG_UUACGU__CC_G_GUUGU_UUUUAU___AGA_C__UGUUAUUU\n3'-UUU...CUUUU___C____________UA____G_____C______UUU_____AC________CCGUA...UUG-5'\n_____________|_____________________________________________________|\n_____________60____________________________________________________10\n |
268 -- 274 |
11 -- 17 |
-31.6805 kcal/mol |
9.07324 kcal/mol |
11.1233 kcal/mol |
223 275@LB@ | |@LB@5'-CGA...GAUAC AC G A G A CAC C GC UAGCG...CGC-3'@LB@ UCA UGGU AAUGCA GG C CAGCA AAAAUA UCU G GCGGUAAA@LB@ ||| |||: |||||| || | ||:|| |||||| ||| | :|::||||@LB@ AGU ACCG UUACGU CC G GUUGU UUUUAU AGA C UGUUAUUU@LB@3'-UUU...CUUUU C UA G C UUU AC CCGUA...UUG-5'@LB@ | |@LB@ 60 10@LB@@LB@@LB@Energy -11.48 kcal/mol@LB@Hybridization Energy -31.6805 kcal/mol@LB@Unfolding Energy - mRNA 9.07324 kcal/mol@LB@Unfolding Energy - sRNA 11.1233 kcal/mol@LB@@LB@Position - mRNA 224 -- 274@LB@Position - sRNA 11 -- 59@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 11 -- 17@LB@ |