197 |
0.02537 |
0.4256 |
b3317 |
rplB |
-11.01 |
0.074049 |
182 -- 205 |
41 -- 62 |
50S ribosomal subunit protein L2 |
|
_____________181______________________206\n_____________|________________________|\n5'-GCA...UGAGU_______AG_A_____A_______AGUUG...UGC-3'\n______________AAGUCGG__G_GUAAU_CAAUGGC\n______________||:||:|__|_|:|||_|||||||\n______________UUUAGUC__C_CGUUA_GUUACCG\n3'-UUU...AACCU_______A________C_______GGUUG...UUG-5'\n_____________|________________________|\n_____________63_______________________40\n |
199 -- 205 |
41 -- 47 |
-19.8959 kcal/mol |
4.6063 kcal/mol |
4.27585 kcal/mol |
181 206@LB@ | |@LB@5'-GCA...UGAGU AG A A AGUUG...UGC-3'@LB@ AAGUCGG G GUAAU CAAUGGC@LB@ ||:||:| | |:||| |||||||@LB@ UUUAGUC C CGUUA GUUACCG@LB@3'-UUU...AACCU A C GGUUG...UUG-5'@LB@ | |@LB@ 63 40@LB@@LB@@LB@Energy -11.01 kcal/mol@LB@Hybridization Energy -19.8959 kcal/mol@LB@Unfolding Energy - mRNA 4.6063 kcal/mol@LB@Unfolding Energy - sRNA 4.27585 kcal/mol@LB@@LB@Position - mRNA 182 -- 205@LB@Position - sRNA 41 -- 62@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 41 -- 47@LB@ |
45 |
0.002879 |
0.2151 |
b3319 |
rplD |
-8.41 |
0.246804 |
191 -- 204 |
42 -- 54 |
50S ribosomal subunit protein L4 |
|
_____________190____________205\n_____________|______________|\n5'-UCA...CGUAA__A___A_______AAUUA...UUG-3'\n______________GG_GAU_GCAAUGG\n______________||_:||_|||||||\n______________CC_UUA_CGUUACC\n3'-UUU...AGUCA__G___________GGGUU...UUG-5'\n_____________|______________|\n_____________55_____________41\n |
198 -- 204 |
42 -- 48 |
-13.9027 kcal/mol |
1.99374 kcal/mol |
3.49932 kcal/mol |
190 205@LB@ | |@LB@5'-UCA...CGUAA A A AAUUA...UUG-3'@LB@ GG GAU GCAAUGG@LB@ || :|| |||||||@LB@ CC UUA CGUUACC@LB@3'-UUU...AGUCA G GGGUU...UUG-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -13.9027 kcal/mol@LB@Unfolding Energy - mRNA 1.99374 kcal/mol@LB@Unfolding Energy - sRNA 3.49932 kcal/mol@LB@@LB@Position - mRNA 191 -- 204@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 42 -- 48@LB@ |
8 |
0.0003008 |
0.1262 |
b3191 |
mlaB |
-9.66 |
0.142648 |
16 -- 23 |
51 -- 58 |
ABC transporter maintaining OM lipid asymmetry cytoplasmic STAS component |
|
_____________15_______24\n_____________|________|\n5'-GUG...ACUUC________UAAAA...AGG-3'\n______________CAGUGGCG\n______________|||||||:\n______________GUCACCGU\n3'-UUU...UUUUA________UACGU...UUG-5'\n_____________|________|\n_____________59_______50\n |
17 -- 23 |
51 -- 57 |
-13.9143 kcal/mol |
1.55672 kcal/mol |
2.69685 kcal/mol |
15 24@LB@ | |@LB@5'-GUG...ACUUC UAAAA...AGG-3'@LB@ CAGUGGCG@LB@ |||||||:@LB@ GUCACCGU@LB@3'-UUU...UUUUA UACGU...UUG-5'@LB@ | |@LB@ 59 50@LB@@LB@@LB@Energy -9.66 kcal/mol@LB@Hybridization Energy -13.9143 kcal/mol@LB@Unfolding Energy - mRNA 1.55672 kcal/mol@LB@Unfolding Energy - sRNA 2.69685 kcal/mol@LB@@LB@Position - mRNA 16 -- 23@LB@Position - sRNA 51 -- 58@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 51 -- 57@LB@ |
171 |
0.02062 |
0.4033 |
b3192 |
mlaC |
-11.25 |
0.065504 |
113 -- 124 |
47 -- 58 |
ABC transporter maintaining OM lipid asymmetry periplasmic binding protein |
|
_____________112__________125\n_____________|____________|\n5'-GGA...AAGAA____________GCCAG...AGG-3'\n______________UAGUGGCGAUGC\n______________:||||||:||||\n______________GUCACCGUUACG\n3'-UUU...UUUUA____________UUACC...UUG-5'\n_____________|____________|\n_____________59___________46\n |
118 -- 124 |
47 -- 53 |
-20.0531 kcal/mol |
5.42731 kcal/mol |
3.37136 kcal/mol |
112 125@LB@ | |@LB@5'-GGA...AAGAA GCCAG...AGG-3'@LB@ UAGUGGCGAUGC@LB@ :||||||:||||@LB@ GUCACCGUUACG@LB@3'-UUU...UUUUA UUACC...UUG-5'@LB@ | |@LB@ 59 46@LB@@LB@@LB@Energy -11.25 kcal/mol@LB@Hybridization Energy -20.0531 kcal/mol@LB@Unfolding Energy - mRNA 5.42731 kcal/mol@LB@Unfolding Energy - sRNA 3.37136 kcal/mol@LB@@LB@Position - mRNA 113 -- 124@LB@Position - sRNA 47 -- 58@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 47 -- 53@LB@ |
196 |
0.02524 |
0.4256 |
b1805 |
fadD |
-8.19 |
0.269381 |
280 -- 298 |
55 -- 72 |
acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) |
|
_____________279_________________299\n_____________|___________________|\n5'-UUG...GGUAG_______U___C_______CG-3'\n______________AUAUGUU_GAG_AGUCGGU\n______________|||||||_||:_|:||:||\n______________UAUACAA_CUU_UUAGUCA\n3'-UUU...AAAAA_______C___________CCGUU...UUG-5'\n_____________|___________________|\n_____________73__________________54\n |
292 -- 298 |
55 -- 61 |
-14.048 kcal/mol |
3.20699 kcal/mol |
2.64594 kcal/mol |
279 299@LB@ | |@LB@5'-UUG...GGUAG U C CG-3'@LB@ AUAUGUU GAG AGUCGGU@LB@ ||||||| ||: |:||:||@LB@ UAUACAA CUU UUAGUCA@LB@3'-UUU...AAAAA C CCGUU...UUG-5'@LB@ | |@LB@ 73 54@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -14.048 kcal/mol@LB@Unfolding Energy - mRNA 3.20699 kcal/mol@LB@Unfolding Energy - sRNA 2.64594 kcal/mol@LB@@LB@Position - mRNA 280 -- 298@LB@Position - sRNA 55 -- 72@LB@Position Seed - mRNA 292 -- 298@LB@Position Seed - sRNA 55 -- 61@LB@ |
131 |
0.01428 |
0.3654 |
b2099 |
yegU |
-10.27 |
0.106798 |
246 -- 258 |
42 -- 54 |
ADP-ribosylglycohydrolase family protein |
|
_____________245___________259\n_____________|_____________|\n5'-GUG...CGUUA__G__________GGAUG...CAC-3'\n______________GG_GAUGCGAUGG\n______________||_:||||:||||\n______________CC_UUACGUUACC\n3'-UUU...AGUCA__G__________GGGUU...UUG-5'\n_____________|_____________|\n_____________55____________41\n |
252 -- 258 |
42 -- 48 |
-19.8763 kcal/mol |
6.10373 kcal/mol |
3.49932 kcal/mol |
245 259@LB@ | |@LB@5'-GUG...CGUUA G GGAUG...CAC-3'@LB@ GG GAUGCGAUGG@LB@ || :||||:||||@LB@ CC UUACGUUACC@LB@3'-UUU...AGUCA G GGGUU...UUG-5'@LB@ | |@LB@ 55 41@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -19.8763 kcal/mol@LB@Unfolding Energy - mRNA 6.10373 kcal/mol@LB@Unfolding Energy - sRNA 3.49932 kcal/mol@LB@@LB@Position - mRNA 246 -- 258@LB@Position - sRNA 42 -- 54@LB@Position Seed - mRNA 252 -- 258@LB@Position Seed - sRNA 42 -- 48@LB@ |
55 |
0.003921 |
0.237 |
b1781 |
yeaE |
-12.93 |
0.026626 |
223 -- 235 |
47 -- 59 |
aldo-keto reductase methylglyoxal to acetol NADPH-dependent |
|
_____________222___________236\n_____________|_____________|\n5'-GUU...UCAAU_____________CUCAC...CAG-3'\n______________UUAGUGGCGAUGU\n______________|:||||||:|||:\n______________AGUCACCGUUACG\n3'-UUU...CUUUU_____________UUACC...UUG-5'\n_____________|_____________|\n_____________60____________46\n |
229 -- 235 |
47 -- 53 |
-19.9127 kcal/mol |
3.5603 kcal/mol |
3.42309 kcal/mol |
222 236@LB@ | |@LB@5'-GUU...UCAAU CUCAC...CAG-3'@LB@ UUAGUGGCGAUGU@LB@ |:||||||:|||:@LB@ AGUCACCGUUACG@LB@3'-UUU...CUUUU UUACC...UUG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -12.93 kcal/mol@LB@Hybridization Energy -19.9127 kcal/mol@LB@Unfolding Energy - mRNA 3.5603 kcal/mol@LB@Unfolding Energy - sRNA 3.42309 kcal/mol@LB@@LB@Position - mRNA 223 -- 235@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 47 -- 53@LB@ |
195 |
0.02483 |
0.4256 |
b2905 |
gcvT |
-11.07 |
0.071827 |
75 -- 92 |
41 -- 59 |
aminomethyltransferase tetrahydrofolate-dependent subunit (T protein) of glycine cleavage complex |
|
_____________74__________________93\n_____________|___________________|\n5'-CUG...CUGUU_____________UCA___AAAAG...AAA-3'\n______________UCGGUGGUAA_GU___GGC\n______________||:||||:||_|:___|||\n______________AGUCACCGUU_CG___CCG\n3'-UUU...CUUUU__________A__UUA___GGUUG...UUG-5'\n_____________|___________________|\n_____________60__________________40\n |
78 -- 84 |
50 -- 56 |
-19.3336 kcal/mol |
3.99003 kcal/mol |
4.26967 kcal/mol |
74 93@LB@ | |@LB@5'-CUG...CUGUU UCA AAAAG...AAA-3'@LB@ UCGGUGGUAA GU GGC@LB@ ||:||||:|| |: |||@LB@ AGUCACCGUU CG CCG@LB@3'-UUU...CUUUU A UUA GGUUG...UUG-5'@LB@ | |@LB@ 60 40@LB@@LB@@LB@Energy -11.07 kcal/mol@LB@Hybridization Energy -19.3336 kcal/mol@LB@Unfolding Energy - mRNA 3.99003 kcal/mol@LB@Unfolding Energy - sRNA 4.26967 kcal/mol@LB@@LB@Position - mRNA 75 -- 92@LB@Position - sRNA 41 -- 59@LB@Position Seed - mRNA 78 -- 84@LB@Position Seed - sRNA 50 -- 56@LB@ |
153 |
0.01791 |
0.3828 |
b2384 |
ypdE |
-7.27 |
0.383330 |
233 -- 249 |
39 -- 54 |
aminopeptidase |
b4305 b3898 |
_____________232_______________250\n_____________|_________________|\n5'-AUU...AGCGA____G_______C____CCUCG...UGC-3'\n______________GGCA_AUGCGAU_GCCU\n______________||||_||||:||_|||:\n______________CCGU_UACGUUA_CGGG\n3'-UUU...AGUCA____________C____UUGUC...UUG-5'\n_____________|_________________|\n_____________55________________38\n |
238 -- 244 |
44 -- 50 |
-20.1031 kcal/mol |
8.07514 kcal/mol |
4.76022 kcal/mol |
232 250@LB@ | |@LB@5'-AUU...AGCGA G C CCUCG...UGC-3'@LB@ GGCA AUGCGAU GCCU@LB@ |||| ||||:|| |||:@LB@ CCGU UACGUUA CGGG@LB@3'-UUU...AGUCA C UUGUC...UUG-5'@LB@ | |@LB@ 55 38@LB@@LB@@LB@Energy -7.27 kcal/mol@LB@Hybridization Energy -20.1031 kcal/mol@LB@Unfolding Energy - mRNA 8.07514 kcal/mol@LB@Unfolding Energy - sRNA 4.76022 kcal/mol@LB@@LB@Position - mRNA 233 -- 249@LB@Position - sRNA 39 -- 54@LB@Position Seed - mRNA 238 -- 244@LB@Position Seed - sRNA 44 -- 50@LB@ |
65 |
0.005052 |
0.2614 |
b0451 |
amtB |
-9.90 |
0.127883 |
170 -- 220 |
11 -- 61 |
ammonium transporter |
|
_____________169____________________________________________________221\n_____________|______________________________________________________|\n5'-CCA...GCUGU____UC_____CACA____CA__AA_______________AUA_C_________AACUG...CGU-3'\n______________AAUC__UGGCA____GCAA__GG__CGA___AAAAUGAAG___G_GACGAUAAA\n______________||||__|||||____||||__||__|:|___|||||:||:___|_|||:|||||\n______________UUAG__ACCGU____CGUU__CC__GUU___UUUUAUUUU___C_CUGUUAUUU\n3'-UUU...ACCUU____UC_____UA______A___GG___GUC_________AGA_A_________CCGUA...UUG-5'\n_____________|______________________________________________________|\n_____________62_____________________________________________________10\n |
214 -- 220 |
11 -- 17 |
-30.4323 kcal/mol |
9.41224 kcal/mol |
11.1248 kcal/mol |
169 221@LB@ | |@LB@5'-CCA...GCUGU UC CACA CA AA AUA C AACUG...CGU-3'@LB@ AAUC UGGCA GCAA GG CGA AAAAUGAAG G GACGAUAAA@LB@ |||| ||||| |||| || |:| |||||:||: | |||:|||||@LB@ UUAG ACCGU CGUU CC GUU UUUUAUUUU C CUGUUAUUU@LB@3'-UUU...ACCUU UC UA A GG GUC AGA A CCGUA...UUG-5'@LB@ | |@LB@ 62 10@LB@@LB@@LB@Energy -9.90 kcal/mol@LB@Hybridization Energy -30.4323 kcal/mol@LB@Unfolding Energy - mRNA 9.41224 kcal/mol@LB@Unfolding Energy - sRNA 11.1248 kcal/mol@LB@@LB@Position - mRNA 170 -- 220@LB@Position - sRNA 11 -- 61@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 11 -- 17@LB@ |