169 |
0.01004 |
0.2071 |
b2384 |
ypdE |
-12.38 |
0.048278 |
93 -- 137 |
31 -- 75 |
aminopeptidase |
b4305 b3898 |
_____________92______________________________________________138\n_____________|_______________________________________________|\n5'-AUU...UAUUU_______C__GGG____G_____AUCG___A_______C________CCCGC...UGC-3'\n______________GCCAGGG_AA____GGC_UGCGC____AAG_UGUUGUG_UG_GUUAC\n______________:||||||_||____|||_|||||____||:_|:||:||_||_|||||\n______________UGGUCCC_UU____CCG_ACGCG____UUU_AUAAUAC_AC_CAAUG\n3'-UUU...GGUUG_______U__AGAA_________GCA____A_______U__U_____UUCCC...GUG-5'\n_____________|_______________________________________________|\n_____________76______________________________________________30\n |
93 -- 99 |
69 -- 75 |
-40.1479 kcal/mol |
18.4667 kcal/mol |
9.29858 kcal/mol |
92 138@LB@ | |@LB@5'-AUU...UAUUU C GGG G AUCG A C CCCGC...UGC-3'@LB@ GCCAGGG AA GGC UGCGC AAG UGUUGUG UG GUUAC@LB@ :|||||| || ||| ||||| ||: |:||:|| || |||||@LB@ UGGUCCC UU CCG ACGCG UUU AUAAUAC AC CAAUG@LB@3'-UUU...GGUUG U AGAA GCA A U U UUCCC...GUG-5'@LB@ | |@LB@ 76 30@LB@@LB@@LB@Energy -12.38 kcal/mol@LB@Hybridization Energy -40.1479 kcal/mol@LB@Unfolding Energy - mRNA 18.4667 kcal/mol@LB@Unfolding Energy - sRNA 9.29858 kcal/mol@LB@@LB@Position - mRNA 93 -- 137@LB@Position - sRNA 31 -- 75@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 69 -- 75@LB@ |
179 |
0.01058 |
0.208 |
b1325 |
ycjG |
-11.81 |
0.062523 |
258 -- 297 |
32 -- 77 |
L-Ala-D/L-Glu epimerase |
|
_____________257_______________________________________________298\n_____________|_________________________________________________|\n5'-AAG...UGAUU______________GCA__GAA____G______________________AAC-3'\n______________GC_CCGGGGAAGUC___GU___GCGC_CGUG_______GUGGUG_GUUG\n______________:|_||:|||||:||___|:___||||_|||:_______:||:||_|||:\n______________UG_GGUCCCUUUAG___CG___CGCG_GCAU_______UACUAC_CAAU\n3'-UUU...GCGGU__U___________AAC__A___________UUAAUAA______U____GUUCC...GUG-5'\n_____________|_________________________________________________|\n_____________78________________________________________________31\n |
264 -- 270 |
64 -- 70 |
-38.4326 kcal/mol |
17.2613 kcal/mol |
9.36253 kcal/mol |
257 298@LB@ | |@LB@5'-AAG...UGAUU GCA GAA G AAC-3'@LB@ GC CCGGGGAAGUC GU GCGC CGUG GUGGUG GUUG@LB@ :| ||:|||||:|| |: |||| |||: :||:|| |||:@LB@ UG GGUCCCUUUAG CG CGCG GCAU UACUAC CAAU@LB@3'-UUU...GCGGU U AAC A UUAAUAA U GUUCC...GUG-5'@LB@ | |@LB@ 78 31@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -38.4326 kcal/mol@LB@Unfolding Energy - mRNA 17.2613 kcal/mol@LB@Unfolding Energy - sRNA 9.36253 kcal/mol@LB@@LB@Position - mRNA 258 -- 297@LB@Position - sRNA 32 -- 77@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 64 -- 70@LB@ |
20 |
0.001165 |
0.1727 |
b1763 |
topB |
-8.06 |
0.310309 |
3 -- 10 |
34 -- 41 |
DNA topoisomerase III |
|
_____________2________11\n_____________|________|\n_________5'-UC________GAAAU...GUA-3'\n______________UGAUGGGU\n______________|||||:||\n______________ACUACUCA\n3'-UUU...AUAAU________AUGUU...GUG-5'\n_____________|________|\n_____________42_______33\n |
4 -- 10 |
34 -- 40 |
-9.5271 kcal/mol |
0.324007 kcal/mol |
1.14413 kcal/mol |
2 11@LB@ | |@LB@ 5'-UC GAAAU...GUA-3'@LB@ UGAUGGGU@LB@ |||||:||@LB@ ACUACUCA@LB@3'-UUU...AUAAU AUGUU...GUG-5'@LB@ | |@LB@ 42 33@LB@@LB@@LB@Energy -8.06 kcal/mol@LB@Hybridization Energy -9.5271 kcal/mol@LB@Unfolding Energy - mRNA 0.324007 kcal/mol@LB@Unfolding Energy - sRNA 1.14413 kcal/mol@LB@@LB@Position - mRNA 3 -- 10@LB@Position - sRNA 34 -- 41@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 34 -- 40@LB@ |
140 |
0.008117 |
0.2031 |
b3221 |
yhcH |
-13.19 |
0.033484 |
158 -- 212 |
34 -- 73 |
DUF386 family protein cupin superfamily |
|
_____________157_____________________________________________________213\n_____________|_______________________________________________________|\n5'-AUC...UGAUG____UUUAC__GG___________UGGCCCAGGGAGAA_______G_________GAAGU...AAG-3'\n______________CAGG_____UU__GGCUGCGCUGU______________AAAUUAU_AUGAUGGGU\n______________||||_____|:__||||||||:||______________|||||||_||||||:||\n______________GUCC_____AG__CCGACGCGGCA______________UUUAAUA_UACUACUCA\n3'-UUU...UUGUG____CUUU___AA________________________________A_________AUGUU...GUG-5'\n_____________|_______________________________________________________|\n_____________74______________________________________________________33\n |
206 -- 212 |
34 -- 40 |
-41.3429 kcal/mol |
18.8865 kcal/mol |
9.26614 kcal/mol |
157 213@LB@ | |@LB@5'-AUC...UGAUG UUUAC GG UGGCCCAGGGAGAA G GAAGU...AAG-3'@LB@ CAGG UU GGCUGCGCUGU AAAUUAU AUGAUGGGU@LB@ |||| |: ||||||||:|| ||||||| ||||||:||@LB@ GUCC AG CCGACGCGGCA UUUAAUA UACUACUCA@LB@3'-UUU...UUGUG CUUU AA A AUGUU...GUG-5'@LB@ | |@LB@ 74 33@LB@@LB@@LB@Energy -13.19 kcal/mol@LB@Hybridization Energy -41.3429 kcal/mol@LB@Unfolding Energy - mRNA 18.8865 kcal/mol@LB@Unfolding Energy - sRNA 9.26614 kcal/mol@LB@@LB@Position - mRNA 158 -- 212@LB@Position - sRNA 34 -- 73@LB@Position Seed - mRNA 206 -- 212@LB@Position Seed - sRNA 34 -- 40@LB@ |
45 |
0.002234 |
0.1727 |
b0055 |
djlA |
-13.22 |
0.033048 |
207 -- 250 |
35 -- 76 |
membrane-anchored DnaK co-chaperone DNA-binding protein |
|
_____________206___________________________________________251\n_____________|_____________________________________________|\n5'-GAC...UGCAG_________AA____A_____GUG_______CCUUAC________CGGCG...UUG-3'\n______________UAUUGGGGA__AAUC_UUGGC___GCCGUGG_______UGAUGGG\n______________:|:::||||__||||_|||||___|||||::_______|||||:|\n______________GUGGUCCCU__UUAG_AACCG___CGGCAUU_______ACUACUC\n3'-UUU...CGGUU_____________________ACG_______UAAUAAU_______AAUGU...GUG-5'\n_____________|_____________________________________________|\n_____________77____________________________________________34\n |
244 -- 250 |
35 -- 41 |
-37.823 kcal/mol |
15.2445 kcal/mol |
9.3594 kcal/mol |
206 251@LB@ | |@LB@5'-GAC...UGCAG AA A GUG CCUUAC CGGCG...UUG-3'@LB@ UAUUGGGGA AAUC UUGGC GCCGUGG UGAUGGG@LB@ :|:::|||| |||| ||||| |||||:: |||||:|@LB@ GUGGUCCCU UUAG AACCG CGGCAUU ACUACUC@LB@3'-UUU...CGGUU ACG UAAUAAU AAUGU...GUG-5'@LB@ | |@LB@ 77 34@LB@@LB@@LB@Energy -13.22 kcal/mol@LB@Hybridization Energy -37.823 kcal/mol@LB@Unfolding Energy - mRNA 15.2445 kcal/mol@LB@Unfolding Energy - sRNA 9.3594 kcal/mol@LB@@LB@Position - mRNA 207 -- 250@LB@Position - sRNA 35 -- 76@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 35 -- 41@LB@ |
48 |
0.002388 |
0.1727 |
b2198 |
ccmD |
-12.59 |
0.043972 |
250 -- 282 |
36 -- 77 |
cytochrome c biogenesis protein; heme export ABC transporter holo-CcmE release factor |
|
_____________249________________________________________283\n_____________|__________________________________________|\n5'-UGG...CGGUU_____UUUUUU_____________G_________________CCGUU...UGG-3'\n______________ACGCC______GUC_UGGCUG_GC_GUG_______GUGAUGA\n______________||:||______:||_||||||_||_||:_______:||||||\n______________UGUGG______UAG_ACCGAC_CG_CAU_______UACUACU\n3'-UUU...GCGGU_____UCCCUU___A______G__G___UUAAUAA_______CAAUG...GUG-5'\n_____________|__________________________________________|\n_____________78_________________________________________35\n |
276 -- 282 |
36 -- 42 |
-31.2682 kcal/mol |
9.31707 kcal/mol |
9.36195 kcal/mol |
249 283@LB@ | |@LB@5'-UGG...CGGUU UUUUUU G CCGUU...UGG-3'@LB@ ACGCC GUC UGGCUG GC GUG GUGAUGA@LB@ ||:|| :|| |||||| || ||: :||||||@LB@ UGUGG UAG ACCGAC CG CAU UACUACU@LB@3'-UUU...GCGGU UCCCUU A G G UUAAUAA CAAUG...GUG-5'@LB@ | |@LB@ 78 35@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -31.2682 kcal/mol@LB@Unfolding Energy - mRNA 9.31707 kcal/mol@LB@Unfolding Energy - sRNA 9.36195 kcal/mol@LB@@LB@Position - mRNA 250 -- 282@LB@Position - sRNA 36 -- 77@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 36 -- 42@LB@ |
67 |
0.003373 |
0.1727 |
b0723 |
sdhA |
-10.29 |
0.122560 |
175 -- 204 |
36 -- 70 |
succinate dehydrogenase flavoprotein subunit |
|
_____________174_________________________________205\n_____________|___________________________________|\n5'-GGU...UUUAU___U____________G______GUG_________AAUUG...GUG-3'\n______________GGA__UC___GUUGUG_UGUGGG____UGUGAUGA\n______________|||__||___|:||:|_:||:::____|:||||||\n______________CCU__AG___CGACGC_GCAUUU____AUACUACU\n3'-UUU...UGGUC___UU__AAC______G______AAUA________CAAUG...GUG-5'\n_____________|___________________________________|\n_____________71__________________________________35\n |
198 -- 204 |
36 -- 42 |
-24.7755 kcal/mol |
5.81881 kcal/mol |
8.66537 kcal/mol |
174 205@LB@ | |@LB@5'-GGU...UUUAU U G GUG AAUUG...GUG-3'@LB@ GGA UC GUUGUG UGUGGG UGUGAUGA@LB@ ||| || |:||:| :||::: |:||||||@LB@ CCU AG CGACGC GCAUUU AUACUACU@LB@3'-UUU...UGGUC UU AAC G AAUA CAAUG...GUG-5'@LB@ | |@LB@ 71 35@LB@@LB@@LB@Energy -10.29 kcal/mol@LB@Hybridization Energy -24.7755 kcal/mol@LB@Unfolding Energy - mRNA 5.81881 kcal/mol@LB@Unfolding Energy - sRNA 8.66537 kcal/mol@LB@@LB@Position - mRNA 175 -- 204@LB@Position - sRNA 36 -- 70@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 36 -- 42@LB@ |
117 |
0.006292 |
0.1893 |
b1769 |
ydjE |
-12.05 |
0.056060 |
116 -- 139 |
36 -- 59 |
putative MFS sugar transporter membrane protein |
b1775 |
_____________115______________________140\n_____________|________________________|\n5'-AUU...UGUUC_______U____A__AA_______UAAAG...UAA-3'\n______________CUGCGCC_UGAA_UA__AUGAUGA\n______________|||||||_|:||_||__|||||||\n______________GACGCGG_AUUU_AU__UACUACU\n3'-UUU...GAACC_______C____A__AA_______CAAUG...GUG-5'\n_____________|________________________|\n_____________60_______________________35\n |
133 -- 139 |
36 -- 42 |
-22.8542 kcal/mol |
3.06151 kcal/mol |
7.74108 kcal/mol |
115 140@LB@ | |@LB@5'-AUU...UGUUC U A AA UAAAG...UAA-3'@LB@ CUGCGCC UGAA UA AUGAUGA@LB@ ||||||| |:|| || |||||||@LB@ GACGCGG AUUU AU UACUACU@LB@3'-UUU...GAACC C A AA CAAUG...GUG-5'@LB@ | |@LB@ 60 35@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -22.8542 kcal/mol@LB@Unfolding Energy - mRNA 3.06151 kcal/mol@LB@Unfolding Energy - sRNA 7.74108 kcal/mol@LB@@LB@Position - mRNA 116 -- 139@LB@Position - sRNA 36 -- 59@LB@Position Seed - mRNA 133 -- 139@LB@Position Seed - sRNA 36 -- 42@LB@ |
46 |
0.002359 |
0.1727 |
b4139 |
aspA |
-15.43 |
0.012067 |
239 -- 273 |
37 -- 76 |
aspartate ammonia-lyase |
|
_____________238_______________________________________274\n_____________|_________________________________________|\n5'-GAU...UUGGG_____________CCA____A____________C_______UUCAC...ACU-3'\n______________UACCAGGGAAGUU___GCUG_UGCC______UA_UAUGGUG\n______________:|||||||||:|:___||||_:|||______||_||||:||\n______________GUGGUCCCUUUAG___CGAC_GCGG______AU_AUACUAC\n3'-UUU...CGGUU_____________AAC_________CAUUUA__A_______UCAAU...GUG-5'\n_____________|_________________________________________|\n_____________77________________________________________36\n |
267 -- 273 |
37 -- 43 |
-35.8845 kcal/mol |
11.095 kcal/mol |
9.35931 kcal/mol |
238 274@LB@ | |@LB@5'-GAU...UUGGG CCA A C UUCAC...ACU-3'@LB@ UACCAGGGAAGUU GCUG UGCC UA UAUGGUG@LB@ :|||||||||:|: |||| :||| || ||||:||@LB@ GUGGUCCCUUUAG CGAC GCGG AU AUACUAC@LB@3'-UUU...CGGUU AAC CAUUUA A UCAAU...GUG-5'@LB@ | |@LB@ 77 36@LB@@LB@@LB@Energy -15.43 kcal/mol@LB@Hybridization Energy -35.8845 kcal/mol@LB@Unfolding Energy - mRNA 11.095 kcal/mol@LB@Unfolding Energy - sRNA 9.35931 kcal/mol@LB@@LB@Position - mRNA 239 -- 273@LB@Position - sRNA 37 -- 76@LB@Position Seed - mRNA 267 -- 273@LB@Position Seed - sRNA 37 -- 43@LB@ |
174 |
0.01024 |
0.2071 |
b0889 |
lrp |
-11.01 |
0.089440 |
79 -- 112 |
38 -- 78 |
leucine-responsive global transcriptional regulator |
|
_____________78________________________________________113\n_____________|_________________________________________|\n5'-GUG...CCGUA_________C______________________CU_C_____UUCGG...AGC-3'\n______________GAC_CCAGG___AUU___GC_GCGCCGUGAAU__U_AUGAU\n______________:||_|||||___||:___||_|||||||:|||__|_|||||\n______________UUG_GGUCC___UAG___CG_CGCGGCAUUUA__A_UACUA\n3'-UUU...CGCGG___U_____CUU___AAC__A___________AU_A_____CUCAA...GUG-5'\n_____________|_________________________________________|\n_____________79________________________________________37\n |
96 -- 102 |
48 -- 54 |
-32.0055 kcal/mol |
11.6338 kcal/mol |
9.36467 kcal/mol |
78 113@LB@ | |@LB@5'-GUG...CCGUA C CU C UUCGG...AGC-3'@LB@ GAC CCAGG AUU GC GCGCCGUGAAU U AUGAU@LB@ :|| ||||| ||: || |||||||:||| | |||||@LB@ UUG GGUCC UAG CG CGCGGCAUUUA A UACUA@LB@3'-UUU...CGCGG U CUU AAC A AU A CUCAA...GUG-5'@LB@ | |@LB@ 79 37@LB@@LB@@LB@Energy -11.01 kcal/mol@LB@Hybridization Energy -32.0055 kcal/mol@LB@Unfolding Energy - mRNA 11.6338 kcal/mol@LB@Unfolding Energy - sRNA 9.36467 kcal/mol@LB@@LB@Position - mRNA 79 -- 112@LB@Position - sRNA 38 -- 78@LB@Position Seed - mRNA 96 -- 102@LB@Position Seed - sRNA 48 -- 54@LB@ |