| 16 |
0.0007867 |
0.1666 |
b2178 |
yejB |
-12.57 |
0.044336 |
179 -- 196 |
66 -- 82 |
microcin C ABC transporter permease |
|
_____________178________________197\n_____________|__________________|\n5'-UGG...CCGUC________AA________GUAGA...GUC-3'\n______________CGCCAGCA__CAGGGAGA\n______________|||||:||__||||||:|\n______________GCGGUUGU__GUCCCUUU\n3'-UUU...AUGAC________G_________AGAAC...GUG-5'\n_____________|__________________|\n_____________83_________________65\n |
190 -- 196 |
66 -- 72 |
-25.5869 kcal/mol |
5.97553 kcal/mol |
7.04029 kcal/mol |
178 197@LB@ | |@LB@5'-UGG...CCGUC AA GUAGA...GUC-3'@LB@ CGCCAGCA CAGGGAGA@LB@ |||||:|| ||||||:|@LB@ GCGGUUGU GUCCCUUU@LB@3'-UUU...AUGAC G AGAAC...GUG-5'@LB@ | |@LB@ 83 65@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -25.5869 kcal/mol@LB@Unfolding Energy - mRNA 5.97553 kcal/mol@LB@Unfolding Energy - sRNA 7.04029 kcal/mol@LB@@LB@Position - mRNA 179 -- 196@LB@Position - sRNA 66 -- 82@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 69 |
0.003463 |
0.1727 |
b2346 |
mlaA |
-10.50 |
0.111973 |
167 -- 195 |
66 -- 86 |
ABC transporter maintaining OM lipid asymmetry OM lipoprotein component |
|
_____________166___________________________196\n_____________|_____________________________|\n5'-GCG...GGCAA_____AUAA____UAAAAAAA________CAUUU...AAG-3'\n______________ACUGC____GCCA________CAGGGAGA\n______________|||||____||||________||||||:|\n______________UGACG____CGGU________GUCCCUUU\n3'-UUU...GCUUA_____________UGUG____________AGAAC...GUG-5'\n_____________|_____________________________|\n_____________87____________________________65\n |
189 -- 195 |
66 -- 72 |
-21.8219 kcal/mol |
3.94189 kcal/mol |
7.38216 kcal/mol |
166 196@LB@ | |@LB@5'-GCG...GGCAA AUAA UAAAAAAA CAUUU...AAG-3'@LB@ ACUGC GCCA CAGGGAGA@LB@ ||||| |||| ||||||:|@LB@ UGACG CGGU GUCCCUUU@LB@3'-UUU...GCUUA UGUG AGAAC...GUG-5'@LB@ | |@LB@ 87 65@LB@@LB@@LB@Energy -10.50 kcal/mol@LB@Hybridization Energy -21.8219 kcal/mol@LB@Unfolding Energy - mRNA 3.94189 kcal/mol@LB@Unfolding Energy - sRNA 7.38216 kcal/mol@LB@@LB@Position - mRNA 167 -- 195@LB@Position - sRNA 66 -- 86@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 83 |
0.004611 |
0.1855 |
b1593 |
ynfK |
-13.15 |
0.034145 |
276 -- 295 |
66 -- 83 |
putative dethiobiotin synthetase |
|
_____________275__________________296\n_____________|____________________|\n5'-CAC...UACAA________CUC_________AACGG-3'\n______________GCGUUAGC___CCAGGGAAA\n______________|||::|:|___|||||||||\n______________CGCGGUUG___GGUCCCUUU\n3'-UUU...UAUGA________U___________AGAAC...GUG-5'\n_____________|____________________|\n_____________84___________________65\n |
289 -- 295 |
66 -- 72 |
-26.3491 kcal/mol |
5.84339 kcal/mol |
7.35847 kcal/mol |
275 296@LB@ | |@LB@5'-CAC...UACAA CUC AACGG-3'@LB@ GCGUUAGC CCAGGGAAA@LB@ |||::|:| |||||||||@LB@ CGCGGUUG GGUCCCUUU@LB@3'-UUU...UAUGA U AGAAC...GUG-5'@LB@ | |@LB@ 84 65@LB@@LB@@LB@Energy -13.15 kcal/mol@LB@Hybridization Energy -26.3491 kcal/mol@LB@Unfolding Energy - mRNA 5.84339 kcal/mol@LB@Unfolding Energy - sRNA 7.35847 kcal/mol@LB@@LB@Position - mRNA 276 -- 295@LB@Position - sRNA 66 -- 83@LB@Position Seed - mRNA 289 -- 295@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 123 |
0.00672 |
0.1913 |
b0882 |
clpA |
-10.14 |
0.130927 |
50 -- 58 |
66 -- 74 |
ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease chaperone activity |
|
_____________49________59\n_____________|_________|\n5'-UUU...CACUA_________GGCCA...CGC-3'\n______________CCAGGGGAA\n______________||||||:||\n______________GGUCCCUUU\n3'-UUU...GUUGU_________AGAAC...GUG-5'\n_____________|_________|\n_____________75________65\n |
52 -- 58 |
66 -- 72 |
-13.8898 kcal/mol |
0.70189 kcal/mol |
3.04768 kcal/mol |
49 59@LB@ | |@LB@5'-UUU...CACUA GGCCA...CGC-3'@LB@ CCAGGGGAA@LB@ ||||||:||@LB@ GGUCCCUUU@LB@3'-UUU...GUUGU AGAAC...GUG-5'@LB@ | |@LB@ 75 65@LB@@LB@@LB@Energy -10.14 kcal/mol@LB@Hybridization Energy -13.8898 kcal/mol@LB@Unfolding Energy - mRNA 0.70189 kcal/mol@LB@Unfolding Energy - sRNA 3.04768 kcal/mol@LB@@LB@Position - mRNA 50 -- 58@LB@Position - sRNA 66 -- 74@LB@Position Seed - mRNA 52 -- 58@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 182 |
0.01083 |
0.2089 |
b0314 |
betT |
-9.44 |
0.176432 |
217 -- 228 |
66 -- 77 |
choline transporter of high affinity |
|
_____________216__________229\n_____________|____________|\n5'-UUC...UUCAC___G________AGGAC...UCC-3'\n______________ACA_CAGGGAAA\n______________|||_||||||||\n______________UGU_GUCCCUUU\n3'-UUU...GCGGU___G________AGAAC...GUG-5'\n_____________|____________|\n_____________78___________65\n |
222 -- 228 |
66 -- 72 |
-15.8835 kcal/mol |
1.82432 kcal/mol |
4.61119 kcal/mol |
216 229@LB@ | |@LB@5'-UUC...UUCAC G AGGAC...UCC-3'@LB@ ACA CAGGGAAA@LB@ ||| ||||||||@LB@ UGU GUCCCUUU@LB@3'-UUU...GCGGU G AGAAC...GUG-5'@LB@ | |@LB@ 78 65@LB@@LB@@LB@Energy -9.44 kcal/mol@LB@Hybridization Energy -15.8835 kcal/mol@LB@Unfolding Energy - mRNA 1.82432 kcal/mol@LB@Unfolding Energy - sRNA 4.61119 kcal/mol@LB@@LB@Position - mRNA 217 -- 228@LB@Position - sRNA 66 -- 77@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 66 -- 72@LB@ |
| 190 |
0.01143 |
0.2119 |
b3233 |
yhcB |
-11.72 |
0.064941 |
161 -- 178 |
66 -- 81 |
DUF1043 family inner membrane-anchored protein |
|
_____________160________________179\n_____________|__________________|\n5'-UUU...CUGAA_________CUAC_____CAAAA...CGU-3'\n______________GCCAACACC____GGAAA\n______________|||||||||____|||||\n______________CGGUUGUGG____CCUUU\n3'-UUU...UGACG_________UC_______AGAAC...GUG-5'\n_____________|__________________|\n_____________82_________________65\n |
163 -- 169 |
73 -- 79 |
-21.1167 kcal/mol |
2.37182 kcal/mol |
7.0207 kcal/mol |
160 179@LB@ | |@LB@5'-UUU...CUGAA CUAC CAAAA...CGU-3'@LB@ GCCAACACC GGAAA@LB@ ||||||||| |||||@LB@ CGGUUGUGG CCUUU@LB@3'-UUU...UGACG UC AGAAC...GUG-5'@LB@ | |@LB@ 82 65@LB@@LB@@LB@Energy -11.72 kcal/mol@LB@Hybridization Energy -21.1167 kcal/mol@LB@Unfolding Energy - mRNA 2.37182 kcal/mol@LB@Unfolding Energy - sRNA 7.0207 kcal/mol@LB@@LB@Position - mRNA 161 -- 178@LB@Position - sRNA 66 -- 81@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 73 -- 79@LB@ |
| 22 |
0.001393 |
0.1727 |
b0794 |
ybhF |
-14.07 |
0.022426 |
148 -- 164 |
67 -- 84 |
putative ABC transporter ATPase |
|
_____________147________________165\n_____________|__________________|\n5'-UAC...GAUGA__________________UGCCA...GUU-3'\n______________UGCGUU_ACGCCAGGGAA\n______________||||::_||:||||||||\n______________ACGCGG_UGUGGUCCCUU\n3'-UUU...UUAUG______U___________UAGAA...GUG-5'\n_____________|__________________|\n_____________85_________________66\n |
158 -- 164 |
67 -- 73 |
-27.705 kcal/mol |
6.27905 kcal/mol |
7.35473 kcal/mol |
147 165@LB@ | |@LB@5'-UAC...GAUGA UGCCA...GUU-3'@LB@ UGCGUU ACGCCAGGGAA@LB@ ||||:: ||:||||||||@LB@ ACGCGG UGUGGUCCCUU@LB@3'-UUU...UUAUG U UAGAA...GUG-5'@LB@ | |@LB@ 85 66@LB@@LB@@LB@Energy -14.07 kcal/mol@LB@Hybridization Energy -27.705 kcal/mol@LB@Unfolding Energy - mRNA 6.27905 kcal/mol@LB@Unfolding Energy - sRNA 7.35473 kcal/mol@LB@@LB@Position - mRNA 148 -- 164@LB@Position - sRNA 67 -- 84@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 35 |
0.001921 |
0.1727 |
b1849 |
purT |
-12.35 |
0.048961 |
166 -- 192 |
67 -- 88 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________165_________________________193\n_____________|___________________________|\n5'-UUU...CGUUU_________G__GAAUUA_________UAUUC...GUC-3'\n______________AUACUGCGC_CG______AUCAGGGGA\n______________|||||||||_|:______|:|||||:|\n______________UAUGACGCG_GU______UGGUCCCUU\n3'-UUU...GCGCU____________UG_____________UAGAA...GUG-5'\n_____________|___________________________|\n_____________89__________________________66\n |
186 -- 192 |
67 -- 73 |
-25.9621 kcal/mol |
6.22738 kcal/mol |
7.38319 kcal/mol |
165 193@LB@ | |@LB@5'-UUU...CGUUU G GAAUUA UAUUC...GUC-3'@LB@ AUACUGCGC CG AUCAGGGGA@LB@ ||||||||| |: |:|||||:|@LB@ UAUGACGCG GU UGGUCCCUU@LB@3'-UUU...GCGCU UG UAGAA...GUG-5'@LB@ | |@LB@ 89 66@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -25.9621 kcal/mol@LB@Unfolding Energy - mRNA 6.22738 kcal/mol@LB@Unfolding Energy - sRNA 7.38319 kcal/mol@LB@@LB@Position - mRNA 166 -- 192@LB@Position - sRNA 67 -- 88@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 91 |
0.004841 |
0.1855 |
b3194 |
mlaE |
-9.16 |
0.198986 |
180 -- 189 |
67 -- 76 |
ABC transporter maintaining OM lipid asymmetry inner membrane permease protein |
|
_____________179________190\n_____________|__________|\n5'-GGA...UCUUU__________UUAAG...GCA-3'\n______________UACCAGGGAG\n______________:||||||||:\n______________GUGGUCCCUU\n3'-UUU...CGGUU__________UAGAA...GUG-5'\n_____________|__________|\n_____________77_________66\n |
183 -- 189 |
67 -- 73 |
-15.9485 kcal/mol |
2.86999 kcal/mol |
3.9178 kcal/mol |
179 190@LB@ | |@LB@5'-GGA...UCUUU UUAAG...GCA-3'@LB@ UACCAGGGAG@LB@ :||||||||:@LB@ GUGGUCCCUU@LB@3'-UUU...CGGUU UAGAA...GUG-5'@LB@ | |@LB@ 77 66@LB@@LB@@LB@Energy -9.16 kcal/mol@LB@Hybridization Energy -15.9485 kcal/mol@LB@Unfolding Energy - mRNA 2.86999 kcal/mol@LB@Unfolding Energy - sRNA 3.9178 kcal/mol@LB@@LB@Position - mRNA 180 -- 189@LB@Position - sRNA 67 -- 76@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 67 -- 73@LB@ |
| 97 |
0.005188 |
0.1855 |
b3060 |
ttdR |
-16.80 |
0.006462 |
125 -- 147 |
67 -- 90 |
transcriptional activator of ttdABT |
b1799 |
_____________124______________________148\n_____________|________________________|\n5'-UCC...AGAAU________________G_______UGGCA...CGC-3'\n______________GAAUAUUGCGCCAG_A_CAGGGAA\n______________|||||:|||||||:_|_|||||||\n______________CUUAUGACGCGGUU_U_GUCCCUU\n3'-UUU...ACGCG______________G_G_______UAGAA...GUG-5'\n_____________|________________________|\n_____________91_______________________66\n |
141 -- 147 |
67 -- 73 |
-34.0784 kcal/mol |
7.10756 kcal/mol |
10.1694 kcal/mol |
124 148@LB@ | |@LB@5'-UCC...AGAAU G UGGCA...CGC-3'@LB@ GAAUAUUGCGCCAG A CAGGGAA@LB@ |||||:|||||||: | |||||||@LB@ CUUAUGACGCGGUU U GUCCCUU@LB@3'-UUU...ACGCG G G UAGAA...GUG-5'@LB@ | |@LB@ 91 66@LB@@LB@@LB@Energy -16.80 kcal/mol@LB@Hybridization Energy -34.0784 kcal/mol@LB@Unfolding Energy - mRNA 7.10756 kcal/mol@LB@Unfolding Energy - sRNA 10.1694 kcal/mol@LB@@LB@Position - mRNA 125 -- 147@LB@Position - sRNA 67 -- 90@LB@Position Seed - mRNA 141 -- 147@LB@Position Seed - sRNA 67 -- 73@LB@ |
