| 1 |
0 |
0 |
b3209 |
elbB |
-118.30 |
0.000000 |
1 -- 83 |
1 -- 83 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
______________1__________________________________________________________________________________84\n______________|__________________________________________________________________________________|\n___________5'-___________________________________________________________________________________GCAGU...GUG-3'\n______________GCGCCAACACCAGGGAAAUCUUGGCUGCGCCGUAAAUUAUUAUGAUGAGUUACAAGGGCACAGCACUGUUUUUCAGGCCGCAC\n______________|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||\n______________CGCGGUUGUGGUCCCUUUAGAACCGACGCGGCAUUUAAUAAUACUACUCAAUGUUCCCGUGUCGUGACAAAAAGUCCGGCGUG\n3'-UUU...UAUGA___________________________________________________________________________________-5'\n_____________|__________________________________________________________________________________|\n_____________84_________________________________________________________________________________1\n |
77 -- 83 |
1 -- 7 |
-173.12 kcal/mol |
26.3528 kcal/mol |
28.4683 kcal/mol |
1 84@LB@ | |@LB@ 5'- GCAGU...GUG-3'@LB@ GCGCCAACACCAGGGAAAUCUUGGCUGCGCCGUAAAUUAUUAUGAUGAGUUACAAGGGCACAGCACUGUUUUUCAGGCCGCAC@LB@ |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||@LB@ CGCGGUUGUGGUCCCUUUAGAACCGACGCGGCAUUUAAUAAUACUACUCAAUGUUCCCGUGUCGUGACAAAAAGUCCGGCGUG@LB@3'-UUU...UAUGA -5'@LB@ | |@LB@ 84 1@LB@@LB@@LB@Energy -118.30 kcal/mol@LB@Hybridization Energy -173.12 kcal/mol@LB@Unfolding Energy - mRNA 26.3528 kcal/mol@LB@Unfolding Energy - sRNA 28.4683 kcal/mol@LB@@LB@Position - mRNA 1 -- 83@LB@Position - sRNA 1 -- 83@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 18 |
0.001002 |
0.1727 |
b2284 |
nuoF |
-9.91 |
0.144715 |
4 -- 28 |
1 -- 36 |
NADH:ubiquinone oxidoreductase chain F |
|
_____________3____________________________________29\n_____________|____________________________________|\n________5'-AAC______C________________________G____UCGAG...ACG-3'\n______________GGUUAU_AGGGUAU___________UCAGGC_GCGC\n______________:||||:_||||:|:___________||||||_||:|\n______________UCAAUG_UCCCGUG___________AGUCCG_CGUG\n3'-UUU...ACUAC______U_______UCGUGACAAAA______G____-5'\n_____________|___________________________________|\n_____________37__________________________________1\n |
11 -- 17 |
23 -- 29 |
-32.4986 kcal/mol |
7.53826 kcal/mol |
15.052 kcal/mol |
3 29@LB@ | |@LB@ 5'-AAC C G UCGAG...ACG-3'@LB@ GGUUAU AGGGUAU UCAGGC GCGC@LB@ :||||: ||||:|: |||||| ||:|@LB@ UCAAUG UCCCGUG AGUCCG CGUG@LB@3'-UUU...ACUAC U UCGUGACAAAA G -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -32.4986 kcal/mol@LB@Unfolding Energy - mRNA 7.53826 kcal/mol@LB@Unfolding Energy - sRNA 15.052 kcal/mol@LB@@LB@Position - mRNA 4 -- 28@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 11 -- 17@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 40 |
0.002113 |
0.1727 |
b2314 |
dedD |
-12.04 |
0.056230 |
10 -- 25 |
1 -- 19 |
membrane-anchored periplasmic protein involved in septation |
|
_____________9___________________26\n_____________|___________________|\n5'-UUG...GCGCC____GAA____________GGUGC...AUU-3'\n______________ACUG______GGGCCGCGC\n______________||||______:||||||:|\n______________UGAC______UCCGGCGUG\n3'-UUU...UGUCG____AAAAAG_________-5'\n_____________|__________________|\n_____________20_________________1\n |
19 -- 25 |
1 -- 7 |
-21.4331 kcal/mol |
3.12458 kcal/mol |
6.26391 kcal/mol |
9 26@LB@ | |@LB@5'-UUG...GCGCC GAA GGUGC...AUU-3'@LB@ ACUG GGGCCGCGC@LB@ |||| :||||||:|@LB@ UGAC UCCGGCGUG@LB@3'-UUU...UGUCG AAAAAG -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -12.04 kcal/mol@LB@Hybridization Energy -21.4331 kcal/mol@LB@Unfolding Energy - mRNA 3.12458 kcal/mol@LB@Unfolding Energy - sRNA 6.26391 kcal/mol@LB@@LB@Position - mRNA 10 -- 25@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 76 |
0.003978 |
0.182 |
b0336 |
codB |
-6.71 |
0.504284 |
39 -- 48 |
1 -- 11 |
cytosine transporter |
|
_____________38__________49\n_____________|___________|\n5'-CCA...UCUUA___________CCACU...UUU-3'\n______________UCAGGCC_UAC\n______________|||||||_:||\n______________AGUCCGG_GUG\n3'-UUU...CAAAA_______C___-5'\n_____________|__________|\n_____________12_________1\n |
39 -- 45 |
5 -- 11 |
-14.8291 kcal/mol |
2.46298 kcal/mol |
5.60325 kcal/mol |
38 49@LB@ | |@LB@5'-CCA...UCUUA CCACU...UUU-3'@LB@ UCAGGCC UAC@LB@ ||||||| :||@LB@ AGUCCGG GUG@LB@3'-UUU...CAAAA C -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -6.71 kcal/mol@LB@Hybridization Energy -14.8291 kcal/mol@LB@Unfolding Energy - mRNA 2.46298 kcal/mol@LB@Unfolding Energy - sRNA 5.60325 kcal/mol@LB@@LB@Position - mRNA 39 -- 48@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 82 |
0.004565 |
0.1855 |
b4144 |
yjeI |
-10.12 |
0.132253 |
163 -- 240 |
1 -- 93 |
DUF4156 family lipoprotein |
|
_____________162_____________________________________________________________________________________________________241\n_____________|_______________________________________________________________________________________________________|\n5'-GCA...GACGA_____________U_________UUGAUUAU_______AACA_____A_______A________________UUA____G_______________U_______UACUG...GCA-3'\n______________CGCGAGUG__GCG_CCAGC_UCA________GGGGAAU______UGC__CGUAAA______________UAC____GCA_GG_AUUG____UCGG_GCCGCGC\n______________|||||:|:__|||_|||:|_:||________|||:|||______|||__||||||______________|||____|||_:|_|:||____||:|_|||||:|\n______________GCGCUUAU__CGC_GGUUG_GGU________CCCUUUA______ACG__GCAUUU______________AUG____CGU_UC_UGAC____AGUC_CGGCGUG\n3'-UUU...CCCAC________GA_________U__________________GAACCG___CG______AAUAAUACUACUCA___UUCC___G__G____AAAA____________-5'\n_____________|______________________________________________________________________________________________________|\n_____________94_____________________________________________________________________________________________________1\n |
234 -- 240 |
1 -- 7 |
-61.0049 kcal/mol |
21.8834 kcal/mol |
29.0051 kcal/mol |
162 241@LB@ | |@LB@5'-GCA...GACGA U UUGAUUAU AACA A A UUA G U UACUG...GCA-3'@LB@ CGCGAGUG GCG CCAGC UCA GGGGAAU UGC CGUAAA UAC GCA GG AUUG UCGG GCCGCGC@LB@ |||||:|: ||| |||:| :|| |||:||| ||| |||||| ||| ||| :| |:|| ||:| |||||:|@LB@ GCGCUUAU CGC GGUUG GGU CCCUUUA ACG GCAUUU AUG CGU UC UGAC AGUC CGGCGUG@LB@3'-UUU...CCCAC GA U GAACCG CG AAUAAUACUACUCA UUCC G G AAAA -5'@LB@ | |@LB@ 94 1@LB@@LB@@LB@Energy -10.12 kcal/mol@LB@Hybridization Energy -61.0049 kcal/mol@LB@Unfolding Energy - mRNA 21.8834 kcal/mol@LB@Unfolding Energy - sRNA 29.0051 kcal/mol@LB@@LB@Position - mRNA 163 -- 240@LB@Position - sRNA 1 -- 93@LB@Position Seed - mRNA 234 -- 240@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 92 |
0.004911 |
0.1855 |
b3732 |
atpD |
-9.01 |
0.211333 |
117 -- 128 |
1 -- 11 |
F1 sector of membrane-bound ATP synthase beta subunit |
|
_____________116__________129\n_____________|____________|\n5'-GGC...GCUCG_______A____UACUC...AAA-3'\n______________UCAGGCC_GCAU\n______________|||||||_|||:\n______________AGUCCGG_CGUG\n3'-UUU...CAAAA____________-5'\n_____________|___________|\n_____________12__________1\n |
117 -- 123 |
5 -- 11 |
-17.8068 kcal/mol |
3.15312 kcal/mol |
5.60325 kcal/mol |
116 129@LB@ | |@LB@5'-GGC...GCUCG A UACUC...AAA-3'@LB@ UCAGGCC GCAU@LB@ ||||||| |||:@LB@ AGUCCGG CGUG@LB@3'-UUU...CAAAA -5'@LB@ | |@LB@ 12 1@LB@@LB@@LB@Energy -9.01 kcal/mol@LB@Hybridization Energy -17.8068 kcal/mol@LB@Unfolding Energy - mRNA 3.15312 kcal/mol@LB@Unfolding Energy - sRNA 5.60325 kcal/mol@LB@@LB@Position - mRNA 117 -- 128@LB@Position - sRNA 1 -- 11@LB@Position Seed - mRNA 117 -- 123@LB@Position Seed - sRNA 5 -- 11@LB@ |
| 105 |
0.005654 |
0.1855 |
b0004 |
thrC |
-10.56 |
0.108775 |
227 -- 299 |
1 -- 79 |
L-threonine synthase |
|
_____________226_____________________________________________________________________________________300\n_____________|_______________________________________________________________________________________|\n5'-CGC...GAUCA____G_G____UCAG____U__GCAA_______CCCAG____________________AAAAU___GG___________________G-3'\n______________CAAC_A_CAGG_____CUU_GC____GCCGUAA___________GGGUU____GGGCA_____CAG__GCUGUUUUUU___CCGCAC\n______________||||_|_||||_____|||_||____|||||||___________|:|||____|||||_____|||__:||||||||:___||||||\n______________GUUG_U_GUCC_____GAA_CG____CGGCAUU___________CUCAA____CCCGU_____GUC__UGACAAAAAG___GGCGUG\n3'-UUU...ACGCG______G____CUUUA___C__ACG________UAAUAAUACUA_____UGUU_____________G___________UCC______-5'\n_____________|______________________________________________________________________________________|\n_____________80_____________________________________________________________________________________1\n |
287 -- 293 |
10 -- 16 |
-55.9039 kcal/mol |
22.5864 kcal/mol |
22.7537 kcal/mol |
226 300@LB@ | |@LB@5'-CGC...GAUCA G G UCAG U GCAA CCCAG AAAAU GG G-3'@LB@ CAAC A CAGG CUU GC GCCGUAA GGGUU GGGCA CAG GCUGUUUUUU CCGCAC@LB@ |||| | |||| ||| || ||||||| |:||| ||||| ||| :||||||||: ||||||@LB@ GUUG U GUCC GAA CG CGGCAUU CUCAA CCCGU GUC UGACAAAAAG GGCGUG@LB@3'-UUU...ACGCG G CUUUA C ACG UAAUAAUACUA UGUU G UCC -5'@LB@ | |@LB@ 80 1@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -55.9039 kcal/mol@LB@Unfolding Energy - mRNA 22.5864 kcal/mol@LB@Unfolding Energy - sRNA 22.7537 kcal/mol@LB@@LB@Position - mRNA 227 -- 299@LB@Position - sRNA 1 -- 79@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 10 -- 16@LB@ |
| 112 |
0.005982 |
0.1855 |
b1820 |
yobD |
-7.30 |
0.411799 |
229 -- 243 |
1 -- 14 |
UPF0266 family inner membrane protein |
|
_____________228_____________244\n_____________|_______________|\n5'-ACC...GAUUC______UC_______UCCUG...CCC-3'\n______________UUUUCA__GCCGCAC\n______________||||||__|||||||\n______________AAAAGU__CGGCGUG\n3'-UUU...UGACA______C________-5'\n_____________|______________|\n_____________15_____________1\n |
237 -- 243 |
1 -- 7 |
-17.9899 kcal/mol |
4.95197 kcal/mol |
5.72803 kcal/mol |
228 244@LB@ | |@LB@5'-ACC...GAUUC UC UCCUG...CCC-3'@LB@ UUUUCA GCCGCAC@LB@ |||||| |||||||@LB@ AAAAGU CGGCGUG@LB@3'-UUU...UGACA C -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -7.30 kcal/mol@LB@Hybridization Energy -17.9899 kcal/mol@LB@Unfolding Energy - mRNA 4.95197 kcal/mol@LB@Unfolding Energy - sRNA 5.72803 kcal/mol@LB@@LB@Position - mRNA 229 -- 243@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 237 -- 243@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 129 |
0.007194 |
0.1964 |
b3401 |
hslO |
-8.25 |
0.287762 |
98 -- 107 |
1 -- 10 |
heat shock protein Hsp33 |
|
_____________97_________108\n_____________|__________|\n5'-GCC...UUAAC__U_______CCGGA...AGA-3'\n______________CA_GCCGCAC\n______________||_|||||||\n______________GU_CGGCGUG\n3'-UUU...AAAAA__C_______-5'\n_____________|_________|\n_____________11________1\n |
101 -- 107 |
1 -- 7 |
-14.7655 kcal/mol |
1.13179 kcal/mol |
5.44172 kcal/mol |
97 108@LB@ | |@LB@5'-GCC...UUAAC U CCGGA...AGA-3'@LB@ CA GCCGCAC@LB@ || |||||||@LB@ GU CGGCGUG@LB@3'-UUU...AAAAA C -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -8.25 kcal/mol@LB@Hybridization Energy -14.7655 kcal/mol@LB@Unfolding Energy - mRNA 1.13179 kcal/mol@LB@Unfolding Energy - sRNA 5.44172 kcal/mol@LB@@LB@Position - mRNA 98 -- 107@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 101 -- 107@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 133 |
0.007533 |
0.1993 |
b2194 |
ccmH |
-11.64 |
0.067570 |
191 -- 199 |
1 -- 9 |
heme lyase CcmH subunit |
|
_____________190_______200\n_____________|_________|\n5'-CUG...UAAGG_________AAUGA...AGU-3'\n______________AGGCCGCAC\n______________|||||||||\n______________UCCGGCGUG\n3'-UUU...AAAAG_________-5'\n_____________|________|\n_____________10_______1\n |
193 -- 199 |
1 -- 7 |
-19.8862 kcal/mol |
2.96679 kcal/mol |
5.10726 kcal/mol |
190 200@LB@ | |@LB@5'-CUG...UAAGG AAUGA...AGU-3'@LB@ AGGCCGCAC@LB@ |||||||||@LB@ UCCGGCGUG@LB@3'-UUU...AAAAG -5'@LB@ | |@LB@ 10 1@LB@@LB@@LB@Energy -11.64 kcal/mol@LB@Hybridization Energy -19.8862 kcal/mol@LB@Unfolding Energy - mRNA 2.96679 kcal/mol@LB@Unfolding Energy - sRNA 5.10726 kcal/mol@LB@@LB@Position - mRNA 191 -- 199@LB@Position - sRNA 1 -- 9@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 1 -- 7@LB@ |
