58 |
0.002925 |
0.1727 |
b0427 |
yajR |
-11.14 |
0.084219 |
218 -- 238 |
54 -- 78 |
putative transporter |
|
_____________217________________________239\n_____________|__________________________|\n5'-CGU...AAAAU_________U________________GACCU...CGG-3'\n______________GACGCCAGG_GAGA____GGC_GCGC\n______________:||:|||||_||:|____|||_||||\n______________UUGUGGUCC_CUUU____CCG_CGCG\n3'-UUU...CGCGG______________AGAA___A____GCAUU...GUG-5'\n_____________|__________________________|\n_____________79_________________________53\n |
220 -- 226 |
70 -- 76 |
-28.7218 kcal/mol |
8.65047 kcal/mol |
8.92888 kcal/mol |
217 239@LB@ | |@LB@5'-CGU...AAAAU U GACCU...CGG-3'@LB@ GACGCCAGG GAGA GGC GCGC@LB@ :||:||||| ||:| ||| ||||@LB@ UUGUGGUCC CUUU CCG CGCG@LB@3'-UUU...CGCGG AGAA A GCAUU...GUG-5'@LB@ | |@LB@ 79 53@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -28.7218 kcal/mol@LB@Unfolding Energy - mRNA 8.65047 kcal/mol@LB@Unfolding Energy - sRNA 8.92888 kcal/mol@LB@@LB@Position - mRNA 218 -- 238@LB@Position - sRNA 54 -- 78@LB@Position Seed - mRNA 220 -- 226@LB@Position Seed - sRNA 70 -- 76@LB@ |
59 |
0.002989 |
0.1727 |
b2713 |
hydN |
-12.16 |
0.053402 |
276 -- 298 |
54 -- 76 |
formate dehydrogenase-H [4Fe-4S] ferredoxin subunit |
b3573 |
_____________275______________________299\n_____________|________________________|\n5'-CUU...UUUCU_______A_____A___A______AU-3'\n______________CAUCAGG_AAAUC__GG_CUGUGC\n______________||:||||_|||||__||_|||:||\n______________GUGGUCC_UUUAG__CC_GACGCG\n3'-UUU...CGGUU_______C_____AA_________GCAUU...GUG-5'\n_____________|________________________|\n_____________77_______________________53\n |
276 -- 282 |
70 -- 76 |
-25.5609 kcal/mol |
4.47784 kcal/mol |
8.92391 kcal/mol |
275 299@LB@ | |@LB@5'-CUU...UUUCU A A A AU-3'@LB@ CAUCAGG AAAUC GG CUGUGC@LB@ ||:|||| ||||| || |||:||@LB@ GUGGUCC UUUAG CC GACGCG@LB@3'-UUU...CGGUU C AA GCAUU...GUG-5'@LB@ | |@LB@ 77 53@LB@@LB@@LB@Energy -12.16 kcal/mol@LB@Hybridization Energy -25.5609 kcal/mol@LB@Unfolding Energy - mRNA 4.47784 kcal/mol@LB@Unfolding Energy - sRNA 8.92391 kcal/mol@LB@@LB@Position - mRNA 276 -- 298@LB@Position - sRNA 54 -- 76@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 70 -- 76@LB@ |
200 |
0.01246 |
0.2193 |
b0425 |
panE |
-12.07 |
0.055655 |
285 -- 293 |
54 -- 62 |
2-dehydropantoate reductase NADPH-specific |
|
_____________284_______294\n_____________|_________|\n5'-AUC...AGGGC_________GUACCGC-3'\n______________UGGCUGCGC\n______________|||||||||\n______________ACCGACGCG\n3'-UUU...UUAGA_________GCAUU...GUG-5'\n_____________|_________|\n_____________63________53\n |
287 -- 293 |
54 -- 60 |
-19.0333 kcal/mol |
2.09185 kcal/mol |
4.8739 kcal/mol |
284 294@LB@ | |@LB@5'-AUC...AGGGC GUACCGC-3'@LB@ UGGCUGCGC@LB@ |||||||||@LB@ ACCGACGCG@LB@3'-UUU...UUAGA GCAUU...GUG-5'@LB@ | |@LB@ 63 53@LB@@LB@@LB@Energy -12.07 kcal/mol@LB@Hybridization Energy -19.0333 kcal/mol@LB@Unfolding Energy - mRNA 2.09185 kcal/mol@LB@Unfolding Energy - sRNA 4.8739 kcal/mol@LB@@LB@Position - mRNA 285 -- 293@LB@Position - sRNA 54 -- 62@LB@Position Seed - mRNA 287 -- 293@LB@Position Seed - sRNA 54 -- 60@LB@ |
6 |
0.0001378 |
0.08054 |
b3860 |
dsbA |
-12.69 |
0.042007 |
89 -- 111 |
55 -- 75 |
periplasmic protein disulfide isomerase I |
|
_____________88______________________112\n_____________|_______________________|\n5'-UUU...GGUUA_______A_____AC________ACAGA...AAC-3'\n______________ACCGGGG_AGAUU__UGGCUGCG\n______________|||:|||_|:||:__||||||||\n______________UGGUCCC_UUUAG__ACCGACGC\n3'-UUU...GGUUG_____________A_________GGCAU...GUG-5'\n_____________|_______________________|\n_____________76______________________54\n |
105 -- 111 |
55 -- 61 |
-30.5184 kcal/mol |
9.58616 kcal/mol |
8.24199 kcal/mol |
88 112@LB@ | |@LB@5'-UUU...GGUUA A AC ACAGA...AAC-3'@LB@ ACCGGGG AGAUU UGGCUGCG@LB@ |||:||| |:||: ||||||||@LB@ UGGUCCC UUUAG ACCGACGC@LB@3'-UUU...GGUUG A GGCAU...GUG-5'@LB@ | |@LB@ 76 54@LB@@LB@@LB@Energy -12.69 kcal/mol@LB@Hybridization Energy -30.5184 kcal/mol@LB@Unfolding Energy - mRNA 9.58616 kcal/mol@LB@Unfolding Energy - sRNA 8.24199 kcal/mol@LB@@LB@Position - mRNA 89 -- 111@LB@Position - sRNA 55 -- 75@LB@Position Seed - mRNA 105 -- 111@LB@Position Seed - sRNA 55 -- 61@LB@ |
87 |
0.004792 |
0.1855 |
b0476 |
aes |
-9.71 |
0.157345 |
34 -- 55 |
56 -- 76 |
acetyl esterase |
|
_____________33______________________56\n_____________|_______________________|\n5'-CGU...ACGUU______________CA_______UUUUA...CAA-3'\n______________UACC_GGGAAAUUU__UGGUUGU\n______________:|||_|||||||:|__|||:||:\n______________GUGG_CCCUUUAGA__ACCGACG\n3'-UUU...CGGUU____U__________________CGGCA...GUG-5'\n_____________|_______________________|\n_____________77______________________55\n |
49 -- 55 |
56 -- 62 |
-24.1621 kcal/mol |
6.04137 kcal/mol |
8.40711 kcal/mol |
33 56@LB@ | |@LB@5'-CGU...ACGUU CA UUUUA...CAA-3'@LB@ UACC GGGAAAUUU UGGUUGU@LB@ :||| |||||||:| |||:||:@LB@ GUGG CCCUUUAGA ACCGACG@LB@3'-UUU...CGGUU U CGGCA...GUG-5'@LB@ | |@LB@ 77 55@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -24.1621 kcal/mol@LB@Unfolding Energy - mRNA 6.04137 kcal/mol@LB@Unfolding Energy - sRNA 8.40711 kcal/mol@LB@@LB@Position - mRNA 34 -- 55@LB@Position - sRNA 56 -- 76@LB@Position Seed - mRNA 49 -- 55@LB@Position Seed - sRNA 56 -- 62@LB@ |
100 |
0.00547 |
0.1855 |
b2451 |
eutA |
-10.77 |
0.099200 |
8 -- 32 |
56 -- 86 |
reactivating factor for ethanolamine ammonia lyase |
|
_____________7_______________________________33\n_____________|_______________________________|\n____5'-GUCAUCA________UU______________CC_____UUUCG...UGU-3'\n______________ACUGCGCC__CGCC______GUUU__GCUGC\n______________||||||||__|:||______:|:|__|||||\n______________UGACGCGG__GUGG______UAGA__CGACG\n3'-UUU...GCUUA________UU____UCCCUU____AC_____CGGCA...GUG-5'\n_____________|_______________________________|\n_____________87______________________________55\n |
9 -- 15 |
79 -- 85 |
-30.9169 kcal/mol |
5.09004 kcal/mol |
15.0537 kcal/mol |
7 33@LB@ | |@LB@ 5'-GUCAUCA UU CC UUUCG...UGU-3'@LB@ ACUGCGCC CGCC GUUU GCUGC@LB@ |||||||| |:|| :|:| |||||@LB@ UGACGCGG GUGG UAGA CGACG@LB@3'-UUU...GCUUA UU UCCCUU AC CGGCA...GUG-5'@LB@ | |@LB@ 87 55@LB@@LB@@LB@Energy -10.77 kcal/mol@LB@Hybridization Energy -30.9169 kcal/mol@LB@Unfolding Energy - mRNA 5.09004 kcal/mol@LB@Unfolding Energy - sRNA 15.0537 kcal/mol@LB@@LB@Position - mRNA 8 -- 32@LB@Position - sRNA 56 -- 86@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 79 -- 85@LB@ |
141 |
0.008132 |
0.2031 |
b3412 |
bioH |
-10.51 |
0.111302 |
230 -- 255 |
56 -- 74 |
pimeloyl-ACP methyl ester carboxylesterase |
|
_____________229________________________256\n_____________|__________________________|\n5'-GGC...AAAGG________AUGUUC______U_____UGCAC...ACG-3'\n______________UCAGGGGA______AUCUUG_GCUGC\n______________:|||||:|______||||||_|||||\n______________GGUCCCUU______UAGAAC_CGACG\n3'-UUU...GUUGU__________________________CGGCA...GUG-5'\n_____________|__________________________|\n_____________75_________________________55\n |
231 -- 237 |
67 -- 73 |
-25.2186 kcal/mol |
6.56983 kcal/mol |
8.13729 kcal/mol |
229 256@LB@ | |@LB@5'-GGC...AAAGG AUGUUC U UGCAC...ACG-3'@LB@ UCAGGGGA AUCUUG GCUGC@LB@ :|||||:| |||||| |||||@LB@ GGUCCCUU UAGAAC CGACG@LB@3'-UUU...GUUGU CGGCA...GUG-5'@LB@ | |@LB@ 75 55@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -25.2186 kcal/mol@LB@Unfolding Energy - mRNA 6.56983 kcal/mol@LB@Unfolding Energy - sRNA 8.13729 kcal/mol@LB@@LB@Position - mRNA 230 -- 255@LB@Position - sRNA 56 -- 74@LB@Position Seed - mRNA 231 -- 237@LB@Position Seed - sRNA 67 -- 73@LB@ |
146 |
0.008611 |
0.2059 |
b3750 |
rbsC |
-8.88 |
0.223197 |
137 -- 159 |
56 -- 77 |
D-ribose ABC transporter permease |
|
_____________136_______________________160\n_____________|_________________________|\n5'-GAU...AGGCC_____________G_UAA_______CGCUG...UCU-3'\n______________AC_CCA_GGAAGU_U___UGGCUGC\n______________||_|||_||||:|_|___|||||||\n______________UG_GGU_CCUUUA_A___ACCGACG\n3'-UUU...GCGGU__U___C______G___________CGGCA...GUG-5'\n_____________|_________________________|\n_____________78________________________55\n |
153 -- 159 |
56 -- 62 |
-22.4095 kcal/mol |
5.11916 kcal/mol |
8.4081 kcal/mol |
136 160@LB@ | |@LB@5'-GAU...AGGCC G UAA CGCUG...UCU-3'@LB@ AC CCA GGAAGU U UGGCUGC@LB@ || ||| ||||:| | |||||||@LB@ UG GGU CCUUUA A ACCGACG@LB@3'-UUU...GCGGU U C G CGGCA...GUG-5'@LB@ | |@LB@ 78 55@LB@@LB@@LB@Energy -8.88 kcal/mol@LB@Hybridization Energy -22.4095 kcal/mol@LB@Unfolding Energy - mRNA 5.11916 kcal/mol@LB@Unfolding Energy - sRNA 8.4081 kcal/mol@LB@@LB@Position - mRNA 137 -- 159@LB@Position - sRNA 56 -- 77@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 56 -- 62@LB@ |
198 |
0.01217 |
0.2164 |
b1236 |
galU |
-11.62 |
0.068156 |
187 -- 208 |
56 -- 74 |
glucose-1-phosphate uridylyltransferase |
|
_____________186____________________209\n_____________|______________________|\n5'-CAA...ACAGU_____A______AAA_______CAUUA...UGC-3'\n______________CCAGG_GAAUUU___UGGCUGC\n______________|||||_:|||:|___|||||||\n______________GGUCC_UUUAGA___ACCGACG\n3'-UUU...GUUGU_____C________________CGGCA...GUG-5'\n_____________|______________________|\n_____________75_____________________55\n |
202 -- 208 |
56 -- 62 |
-24.2568 kcal/mol |
4.50323 kcal/mol |
8.13729 kcal/mol |
186 209@LB@ | |@LB@5'-CAA...ACAGU A AAA CAUUA...UGC-3'@LB@ CCAGG GAAUUU UGGCUGC@LB@ ||||| :|||:| |||||||@LB@ GGUCC UUUAGA ACCGACG@LB@3'-UUU...GUUGU C CGGCA...GUG-5'@LB@ | |@LB@ 75 55@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -24.2568 kcal/mol@LB@Unfolding Energy - mRNA 4.50323 kcal/mol@LB@Unfolding Energy - sRNA 8.13729 kcal/mol@LB@@LB@Position - mRNA 187 -- 208@LB@Position - sRNA 56 -- 74@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 56 -- 62@LB@ |
134 |
0.007678 |
0.1993 |
b3139 |
agaC |
-7.83 |
0.338422 |
255 -- 275 |
57 -- 74 |
N-acetylgalactosamine-specific enzyme IIC component of PTS |
|
_____________254___________________276\n_____________|_____________________|\n5'-AAC...UUGUU_______UUGAU_________GAAGC...CGA-3'\n______________CUGGGGA_____UUUUGGCUG\n______________|::||||_____|:|||||||\n______________GGUCCCU_____AGAACCGAC\n3'-UUU...GUUGU_______UU____________GCGGC...GUG-5'\n_____________|_____________________|\n_____________75____________________56\n |
269 -- 275 |
57 -- 63 |
-21.9136 kcal/mol |
6.09668 kcal/mol |
7.9843 kcal/mol |
254 276@LB@ | |@LB@5'-AAC...UUGUU UUGAU GAAGC...CGA-3'@LB@ CUGGGGA UUUUGGCUG@LB@ |::|||| |:|||||||@LB@ GGUCCCU AGAACCGAC@LB@3'-UUU...GUUGU UU GCGGC...GUG-5'@LB@ | |@LB@ 75 56@LB@@LB@@LB@Energy -7.83 kcal/mol@LB@Hybridization Energy -21.9136 kcal/mol@LB@Unfolding Energy - mRNA 6.09668 kcal/mol@LB@Unfolding Energy - sRNA 7.9843 kcal/mol@LB@@LB@Position - mRNA 255 -- 275@LB@Position - sRNA 57 -- 74@LB@Position Seed - mRNA 269 -- 275@LB@Position Seed - sRNA 57 -- 63@LB@ |