103 |
0.005609 |
0.1855 |
b2912 |
fau |
-11.92 |
0.059425 |
103 -- 124 |
64 -- 85 |
5-formyltetrahydrofolate cyclo-ligase family protein |
|
_____________102____________________125\n_____________|______________________|\n5'-GAA...ACAGC_____G_______UC_______CCCUU...UGG-3'\n______________CUGCG_CGGCAUC__GGAGAUU\n______________|||||_|::||:|__|||:||:\n______________GACGC_GUUGUGG__CCUUUAG\n3'-UUU...CUUAU_____G_______UC_______AACCG...GUG-5'\n_____________|______________________|\n_____________86_____________________63\n |
118 -- 124 |
64 -- 70 |
-27.7471 kcal/mol |
8.44142 kcal/mol |
7.38387 kcal/mol |
102 125@LB@ | |@LB@5'-GAA...ACAGC G UC CCCUU...UGG-3'@LB@ CUGCG CGGCAUC GGAGAUU@LB@ ||||| |::||:| |||:||:@LB@ GACGC GUUGUGG CCUUUAG@LB@3'-UUU...CUUAU G UC AACCG...GUG-5'@LB@ | |@LB@ 86 63@LB@@LB@@LB@Energy -11.92 kcal/mol@LB@Hybridization Energy -27.7471 kcal/mol@LB@Unfolding Energy - mRNA 8.44142 kcal/mol@LB@Unfolding Energy - sRNA 7.38387 kcal/mol@LB@@LB@Position - mRNA 103 -- 124@LB@Position - sRNA 64 -- 85@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 64 -- 70@LB@ |
106 |
0.005731 |
0.1855 |
b0867 |
amiD |
-15.82 |
0.010089 |
39 -- 60 |
64 -- 86 |
1 6-anhydro-N-acetylmuramyl-L-alanine amidase Zn-dependent; OM lipoprotein |
|
_____________38_______________________61\n_____________|________________________|\n5'-GAU...AAAGA_______AA_______________GCCUU...CCC-3'\n______________ACUGCGU__AGCAC__GGGAGAUC\n______________||||||:__|:|||__||||:|||\n______________UGACGCG__UUGUG__CCCUUUAG\n3'-UUU...GCUUA_______G______GU________AACCG...GUG-5'\n_____________|________________________|\n_____________87_______________________63\n |
54 -- 60 |
64 -- 70 |
-27.7093 kcal/mol |
4.50209 kcal/mol |
7.38435 kcal/mol |
38 61@LB@ | |@LB@5'-GAU...AAAGA AA GCCUU...CCC-3'@LB@ ACUGCGU AGCAC GGGAGAUC@LB@ ||||||: |:||| ||||:|||@LB@ UGACGCG UUGUG CCCUUUAG@LB@3'-UUU...GCUUA G GU AACCG...GUG-5'@LB@ | |@LB@ 87 63@LB@@LB@@LB@Energy -15.82 kcal/mol@LB@Hybridization Energy -27.7093 kcal/mol@LB@Unfolding Energy - mRNA 4.50209 kcal/mol@LB@Unfolding Energy - sRNA 7.38435 kcal/mol@LB@@LB@Position - mRNA 39 -- 60@LB@Position - sRNA 64 -- 86@LB@Position Seed - mRNA 54 -- 60@LB@Position Seed - sRNA 64 -- 70@LB@ |
138 |
0.007886 |
0.2012 |
b3991 |
thiG |
-13.21 |
0.033127 |
237 -- 259 |
64 -- 85 |
thiamine biosynthesis ThiGH complex subunit |
|
_____________236______________________260\n_____________|________________________|\n5'-GCA...CACAU____UUA_________________CGCUU...CCG-3'\n______________CUGU___CCGGCA_CAGGGAAAUU\n______________|||:___||::||_|||||||||:\n______________GACG___GGUUGU_GUCCCUUUAG\n3'-UUU...CUUAU____C________G__________AACCG...GUG-5'\n_____________|________________________|\n_____________86_______________________63\n |
253 -- 259 |
64 -- 70 |
-25.8634 kcal/mol |
5.26561 kcal/mol |
7.38387 kcal/mol |
236 260@LB@ | |@LB@5'-GCA...CACAU UUA CGCUU...CCG-3'@LB@ CUGU CCGGCA CAGGGAAAUU@LB@ |||: ||::|| |||||||||:@LB@ GACG GGUUGU GUCCCUUUAG@LB@3'-UUU...CUUAU C G AACCG...GUG-5'@LB@ | |@LB@ 86 63@LB@@LB@@LB@Energy -13.21 kcal/mol@LB@Hybridization Energy -25.8634 kcal/mol@LB@Unfolding Energy - mRNA 5.26561 kcal/mol@LB@Unfolding Energy - sRNA 7.38387 kcal/mol@LB@@LB@Position - mRNA 237 -- 259@LB@Position - sRNA 64 -- 85@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 64 -- 70@LB@ |
139 |
0.008022 |
0.2031 |
b0311 |
betA |
-9.91 |
0.144745 |
36 -- 54 |
64 -- 80 |
choline dehydrogenase a flavoprotein |
|
_____________35__________________55\n_____________|___________________|\n5'-CGU...CUGGA________U____C_____CCCGG...AAG-3'\n______________UCAACACC_GGGG_GAAUC\n______________:|||||||_:|||_:||||\n______________GGUUGUGG_UCCC_UUUAG\n3'-UUU...GACGC___________________AACCG...GUG-5'\n_____________|___________________|\n_____________81__________________63\n |
37 -- 43 |
73 -- 79 |
-20.9821 kcal/mol |
4.03056 kcal/mol |
7.04361 kcal/mol |
35 55@LB@ | |@LB@5'-CGU...CUGGA U C CCCGG...AAG-3'@LB@ UCAACACC GGGG GAAUC@LB@ :||||||| :||| :||||@LB@ GGUUGUGG UCCC UUUAG@LB@3'-UUU...GACGC AACCG...GUG-5'@LB@ | |@LB@ 81 63@LB@@LB@@LB@Energy -9.91 kcal/mol@LB@Hybridization Energy -20.9821 kcal/mol@LB@Unfolding Energy - mRNA 4.03056 kcal/mol@LB@Unfolding Energy - sRNA 7.04361 kcal/mol@LB@@LB@Position - mRNA 36 -- 54@LB@Position - sRNA 64 -- 80@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 73 -- 79@LB@ |
184 |
0.01102 |
0.2089 |
b1033 |
ghrA |
-10.56 |
0.108938 |
6 -- 15 |
64 -- 73 |
glyoxylate/hydroxypyruvate reductase A |
|
_____________5__________16\n_____________|__________|\n______5'-UAAUU__________AUGAC...GCG-3'\n______________UAGGGAAAUC\n______________:|||||||||\n______________GUCCCUUUAG\n3'-UUU...UUGUG__________AACCG...GUG-5'\n_____________|__________|\n_____________74_________63\n |
9 -- 15 |
64 -- 70 |
-14.6499 kcal/mol |
0.954451 kcal/mol |
3.13463 kcal/mol |
5 16@LB@ | |@LB@ 5'-UAAUU AUGAC...GCG-3'@LB@ UAGGGAAAUC@LB@ :|||||||||@LB@ GUCCCUUUAG@LB@3'-UUU...UUGUG AACCG...GUG-5'@LB@ | |@LB@ 74 63@LB@@LB@@LB@Energy -10.56 kcal/mol@LB@Hybridization Energy -14.6499 kcal/mol@LB@Unfolding Energy - mRNA 0.954451 kcal/mol@LB@Unfolding Energy - sRNA 3.13463 kcal/mol@LB@@LB@Position - mRNA 6 -- 15@LB@Position - sRNA 64 -- 73@LB@Position Seed - mRNA 9 -- 15@LB@Position Seed - sRNA 64 -- 70@LB@ |
2 |
1.572e-09 |
2.767e-06 |
b3749 |
rbsA |
-20.95 |
0.000983 |
43 -- 64 |
65 -- 86 |
D-ribose ABC transporter ATPase |
|
_____________42_____________________65\n_____________|______________________|\n5'-UAA...GAGCA_____AAA______________ACCAU...UGG-3'\n______________GCUGC___AACACCAGGGAAAU\n______________:||||___||||||||||||||\n______________UGACG___UUGUGGUCCCUUUA\n3'-UUU...GCUUA_____CGG______________GAACC...GUG-5'\n_____________|______________________|\n_____________87_____________________64\n |
58 -- 64 |
65 -- 71 |
-31.8331 kcal/mol |
3.49898 kcal/mol |
7.38332 kcal/mol |
42 65@LB@ | |@LB@5'-UAA...GAGCA AAA ACCAU...UGG-3'@LB@ GCUGC AACACCAGGGAAAU@LB@ :|||| ||||||||||||||@LB@ UGACG UUGUGGUCCCUUUA@LB@3'-UUU...GCUUA CGG GAACC...GUG-5'@LB@ | |@LB@ 87 64@LB@@LB@@LB@Energy -20.95 kcal/mol@LB@Hybridization Energy -31.8331 kcal/mol@LB@Unfolding Energy - mRNA 3.49898 kcal/mol@LB@Unfolding Energy - sRNA 7.38332 kcal/mol@LB@@LB@Position - mRNA 43 -- 64@LB@Position - sRNA 65 -- 86@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 65 -- 71@LB@ |
62 |
0.003053 |
0.1727 |
b3812 |
yigB |
-11.80 |
0.062766 |
182 -- 199 |
65 -- 83 |
5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis |
|
_____________181_________________200\n_____________|___________________|\n5'-CUG...UCCAC__________G________AAUGC...GAG-3'\n______________GCGCCAA_AC_GGGGAAAU\n______________|||||||_||_:|||||||\n______________CGCGGUU_UG_UCCCUUUA\n3'-UUU...UAUGA_______G__G________GAACC...GUG-5'\n_____________|___________________|\n_____________84__________________64\n |
193 -- 199 |
65 -- 71 |
-28.1563 kcal/mol |
8.99645 kcal/mol |
7.35968 kcal/mol |
181 200@LB@ | |@LB@5'-CUG...UCCAC G AAUGC...GAG-3'@LB@ GCGCCAA AC GGGGAAAU@LB@ ||||||| || :|||||||@LB@ CGCGGUU UG UCCCUUUA@LB@3'-UUU...UAUGA G G GAACC...GUG-5'@LB@ | |@LB@ 84 64@LB@@LB@@LB@Energy -11.80 kcal/mol@LB@Hybridization Energy -28.1563 kcal/mol@LB@Unfolding Energy - mRNA 8.99645 kcal/mol@LB@Unfolding Energy - sRNA 7.35968 kcal/mol@LB@@LB@Position - mRNA 182 -- 199@LB@Position - sRNA 65 -- 83@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 65 -- 71@LB@ |
98 |
0.005208 |
0.1855 |
b4174 |
hflK |
-10.42 |
0.116019 |
265 -- 284 |
65 -- 83 |
modulator for HflB protease specific for phage lambda cII repressor |
|
_____________264__________________285\n_____________|____________________|\n5'-AGA...ACCUG___G____U__G________GGAAA...GUC-3'\n______________GCG_CAAC_CU_AGGGAAAU\n______________|||_||||_|:_||||||||\n______________CGC_GUUG_GG_UCCCUUUA\n3'-UUU...UAUGA___G____U___________GAACC...GUG-5'\n_____________|____________________|\n_____________84___________________64\n |
278 -- 284 |
65 -- 71 |
-24.0318 kcal/mol |
6.25533 kcal/mol |
7.35968 kcal/mol |
264 285@LB@ | |@LB@5'-AGA...ACCUG G U G GGAAA...GUC-3'@LB@ GCG CAAC CU AGGGAAAU@LB@ ||| |||| |: ||||||||@LB@ CGC GUUG GG UCCCUUUA@LB@3'-UUU...UAUGA G U GAACC...GUG-5'@LB@ | |@LB@ 84 64@LB@@LB@@LB@Energy -10.42 kcal/mol@LB@Hybridization Energy -24.0318 kcal/mol@LB@Unfolding Energy - mRNA 6.25533 kcal/mol@LB@Unfolding Energy - sRNA 7.35968 kcal/mol@LB@@LB@Position - mRNA 265 -- 284@LB@Position - sRNA 65 -- 83@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 65 -- 71@LB@ |
115 |
0.006085 |
0.1855 |
b3030 |
parE |
-11.34 |
0.077071 |
10 -- 31 |
65 -- 86 |
DNA topoisomerase IV subunit B |
|
_____________9______________________32\n_____________|______________________|\n5'-UUU...AUCUG_____UG_____GAC_______GAAGU...ACC-3'\n______________GCUGC__CAACA___GGGAGAU\n______________:||||__|||||___||||:||\n______________UGACG__GUUGU___CCCUUUA\n3'-UUU...GCUUA_____CG_____GGU_______GAACC...GUG-5'\n_____________|______________________|\n_____________87_____________________64\n |
25 -- 31 |
65 -- 71 |
-24.4704 kcal/mol |
5.74549 kcal/mol |
7.38332 kcal/mol |
9 32@LB@ | |@LB@5'-UUU...AUCUG UG GAC GAAGU...ACC-3'@LB@ GCUGC CAACA GGGAGAU@LB@ :|||| ||||| ||||:||@LB@ UGACG GUUGU CCCUUUA@LB@3'-UUU...GCUUA CG GGU GAACC...GUG-5'@LB@ | |@LB@ 87 64@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -24.4704 kcal/mol@LB@Unfolding Energy - mRNA 5.74549 kcal/mol@LB@Unfolding Energy - sRNA 7.38332 kcal/mol@LB@@LB@Position - mRNA 10 -- 31@LB@Position - sRNA 65 -- 86@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 65 -- 71@LB@ |
178 |
0.01053 |
0.208 |
b3582 |
sgbU |
-5.91 |
0.640260 |
169 -- 196 |
65 -- 84 |
putative L-xylulose 5-phosphate 3-epimerase |
|
_____________168__________________________197\n_____________|____________________________|\n5'-UCU...UUCCA_____AAAU_______AUCU________GCGCG...UUG-3'\n______________UGCGC____CGACGCU____GGGGAGGU\n______________|||||____|:||:|:____:||||::|\n______________ACGCG____GUUGUGG____UCCCUUUA\n3'-UUU...UUAUG____________________________GAACC...GUG-5'\n_____________|____________________________|\n_____________85___________________________64\n |
190 -- 196 |
65 -- 71 |
-23.9168 kcal/mol |
10.6467 kcal/mol |
7.36194 kcal/mol |
168 197@LB@ | |@LB@5'-UCU...UUCCA AAAU AUCU GCGCG...UUG-3'@LB@ UGCGC CGACGCU GGGGAGGU@LB@ ||||| |:||:|: :||||::|@LB@ ACGCG GUUGUGG UCCCUUUA@LB@3'-UUU...UUAUG GAACC...GUG-5'@LB@ | |@LB@ 85 64@LB@@LB@@LB@Energy -5.91 kcal/mol@LB@Hybridization Energy -23.9168 kcal/mol@LB@Unfolding Energy - mRNA 10.6467 kcal/mol@LB@Unfolding Energy - sRNA 7.36194 kcal/mol@LB@@LB@Position - mRNA 169 -- 196@LB@Position - sRNA 65 -- 84@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 65 -- 71@LB@ |