| 156 |
0.009123 |
0.2059 |
b2683 |
ygaH |
-13.79 |
0.025463 |
164 -- 213 |
27 -- 86 |
putative L-valine exporter norvaline resistance protein |
|
_____________163______________________________________________________________214\n_____________|________________________________________________________________|\n5'-AUU...GCCUC_________________CAU________AAGGA_____C_________________C_______UUCUG...CAA-3'\n______________ACUGCGUUAAU_CCAGG____UC_UGGC_____GCGCC____________GAUGAG_UAUGAGG\n______________||||||::||:_|||||____||_||||_____|||||____________||||||_||::|||\n______________UGACGCGGUUG_GGUCC____AG_ACCG_____CGCGG____________CUACUC_AUGUUCC\n3'-UUU...GCUUA___________U_____CUUU__A____A_________CAUUUAAUAAUA______A_______CGUGU...GUG-5'\n_____________|________________________________________________________________|\n_____________87_______________________________________________________________26\n |
207 -- 213 |
27 -- 33 |
-50.2075 kcal/mol |
19.3484 kcal/mol |
17.0667 kcal/mol |
163 214@LB@ | |@LB@5'-AUU...GCCUC CAU AAGGA C C UUCUG...CAA-3'@LB@ ACUGCGUUAAU CCAGG UC UGGC GCGCC GAUGAG UAUGAGG@LB@ ||||||::||: ||||| || |||| ||||| |||||| ||::|||@LB@ UGACGCGGUUG GGUCC AG ACCG CGCGG CUACUC AUGUUCC@LB@3'-UUU...GCUUA U CUUU A A CAUUUAAUAAUA A CGUGU...GUG-5'@LB@ | |@LB@ 87 26@LB@@LB@@LB@Energy -13.79 kcal/mol@LB@Hybridization Energy -50.2075 kcal/mol@LB@Unfolding Energy - mRNA 19.3484 kcal/mol@LB@Unfolding Energy - sRNA 17.0667 kcal/mol@LB@@LB@Position - mRNA 164 -- 213@LB@Position - sRNA 27 -- 86@LB@Position Seed - mRNA 207 -- 213@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 187 |
0.01114 |
0.2089 |
b0801 |
ybiC |
-12.72 |
0.041489 |
266 -- 279 |
27 -- 40 |
putative dehydrogenase |
b0517 |
_____________265____________280\n_____________|______________|\n5'-GCU...CGUCA_______A______AACAA...UUG-3'\n______________GAUGGGU_GCGAGG\n______________||||:||_:|:|||\n______________CUACUCA_UGUUCC\n3'-UUU...UAAUA_______A______CGUGU...GUG-5'\n_____________|______________|\n_____________41_____________26\n |
266 -- 272 |
34 -- 40 |
-18.8068 kcal/mol |
3.48138 kcal/mol |
2.60767 kcal/mol |
265 280@LB@ | |@LB@5'-GCU...CGUCA A AACAA...UUG-3'@LB@ GAUGGGU GCGAGG@LB@ ||||:|| :|:|||@LB@ CUACUCA UGUUCC@LB@3'-UUU...UAAUA A CGUGU...GUG-5'@LB@ | |@LB@ 41 26@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -18.8068 kcal/mol@LB@Unfolding Energy - mRNA 3.48138 kcal/mol@LB@Unfolding Energy - sRNA 2.60767 kcal/mol@LB@@LB@Position - mRNA 266 -- 279@LB@Position - sRNA 27 -- 40@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 15 |
0.000767 |
0.1666 |
b2497 |
uraA |
-16.56 |
0.007223 |
161 -- 232 |
28 -- 90 |
uracil permease |
|
_____________160_________________________________________________________________________233\n_____________|___________________________________________________________________________|\n5'-AGC...UUUUU_____AA_____UAU_____AUAAUA___A___U___A__AU_AC________C_____CGG_______GA____ACCGC...UCC-3'\n______________GAGUA__GCGCC___AACAC______CAG_GGA_AAU_CU__G__GCGCCGUG___UAU___GGUGAGU___AAG\n______________||:||__|||||___|||||______|||_|||_|||_||__|__|||||||:___|||___|:|||||___|||\n______________CUUAU__CGCGG___UUGUG______GUC_CCU_UUA_GA__C__CGCGGCAU___AUA___CUACUCA___UUC\n3'-UUU...ACGCG_____GA_________________________________AC_GA________UUA___AUA_______AUG___CCGUG...GUG-5'\n_____________|___________________________________________________________________________|\n_____________91__________________________________________________________________________27\n |
221 -- 227 |
34 -- 40 |
-48.784 kcal/mol |
15.1604 kcal/mol |
17.0677 kcal/mol |
160 233@LB@ | |@LB@5'-AGC...UUUUU AA UAU AUAAUA A U A AU AC C CGG GA ACCGC...UCC-3'@LB@ GAGUA GCGCC AACAC CAG GGA AAU CU G GCGCCGUG UAU GGUGAGU AAG@LB@ ||:|| ||||| ||||| ||| ||| ||| || | |||||||: ||| |:||||| |||@LB@ CUUAU CGCGG UUGUG GUC CCU UUA GA C CGCGGCAU AUA CUACUCA UUC@LB@3'-UUU...ACGCG GA AC GA UUA AUA AUG CCGUG...GUG-5'@LB@ | |@LB@ 91 27@LB@@LB@@LB@Energy -16.56 kcal/mol@LB@Hybridization Energy -48.784 kcal/mol@LB@Unfolding Energy - mRNA 15.1604 kcal/mol@LB@Unfolding Energy - sRNA 17.0677 kcal/mol@LB@@LB@Position - mRNA 161 -- 232@LB@Position - sRNA 28 -- 90@LB@Position Seed - mRNA 221 -- 227@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 28 |
0.001577 |
0.1727 |
b0598 |
cstA |
-11.00 |
0.089647 |
31 -- 48 |
28 -- 45 |
carbon starvation protein involved in peptide utilization; APC peptide transporter family protein |
|
_____________30__________________49\n_____________|___________________|\n5'-GUA...ACAGA___________A_______AAAAC...ACG-3'\n______________AUUA_GAUGAG_UUGCAGG\n______________||||_||||||_||:||:|\n______________UAAU_CUACUC_AAUGUUC\n3'-UUU...UUUAA____A______________CCGUG...GUG-5'\n_____________|___________________|\n_____________46__________________27\n |
42 -- 48 |
28 -- 34 |
-16.2081 kcal/mol |
3.25033 kcal/mol |
1.95571 kcal/mol |
30 49@LB@ | |@LB@5'-GUA...ACAGA A AAAAC...ACG-3'@LB@ AUUA GAUGAG UUGCAGG@LB@ |||| |||||| ||:||:|@LB@ UAAU CUACUC AAUGUUC@LB@3'-UUU...UUUAA A CCGUG...GUG-5'@LB@ | |@LB@ 46 27@LB@@LB@@LB@Energy -11.00 kcal/mol@LB@Hybridization Energy -16.2081 kcal/mol@LB@Unfolding Energy - mRNA 3.25033 kcal/mol@LB@Unfolding Energy - sRNA 1.95571 kcal/mol@LB@@LB@Position - mRNA 31 -- 48@LB@Position - sRNA 28 -- 45@LB@Position Seed - mRNA 42 -- 48@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 55 |
0.002731 |
0.1727 |
b2480 |
bcp |
-8.89 |
0.222722 |
156 -- 187 |
28 -- 56 |
peroxiredoxin; thiol peroxidase thioredoxin-dependent |
|
_____________155_________________________________188\n_____________|___________________________________|\n5'-GAG...AUUAA______C_______CCCAAC_______________AUGGA...UUC-3'\n______________CGUCGU_AAUUAUU______AUGAUGA___ACAGG\n______________||:|||_|||||||______|||||||___|||:|\n______________GCGGCA_UUAAUAA______UACUACU___UGUUC\n3'-UUU...CCGAC______U____________________CAA_____CCGUG...GUG-5'\n_____________|___________________________________|\n_____________57__________________________________27\n |
176 -- 182 |
36 -- 42 |
-21.7802 kcal/mol |
6.3273 kcal/mol |
6.56571 kcal/mol |
155 188@LB@ | |@LB@5'-GAG...AUUAA C CCCAAC AUGGA...UUC-3'@LB@ CGUCGU AAUUAUU AUGAUGA ACAGG@LB@ ||:||| ||||||| ||||||| |||:|@LB@ GCGGCA UUAAUAA UACUACU UGUUC@LB@3'-UUU...CCGAC U CAA CCGUG...GUG-5'@LB@ | |@LB@ 57 27@LB@@LB@@LB@Energy -8.89 kcal/mol@LB@Hybridization Energy -21.7802 kcal/mol@LB@Unfolding Energy - mRNA 6.3273 kcal/mol@LB@Unfolding Energy - sRNA 6.56571 kcal/mol@LB@@LB@Position - mRNA 156 -- 187@LB@Position - sRNA 28 -- 56@LB@Position Seed - mRNA 176 -- 182@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 119 |
0.006508 |
0.1913 |
b3834 |
ubiJ |
-9.73 |
0.156135 |
145 -- 181 |
28 -- 78 |
aerobic ubiquinone synthesis protein SCP2 family protein |
|
_____________144_________________________________________________182\n_____________|___________________________________________________|\n5'-GCU...AAUCU____G______UUGUGGC_____A___________________________UUCUG...UGG-3'\n______________GACG_CAGGGG_______GCUGC_UCGU______________GGUUAUAAG\n______________:||:_|||||:_______|||||_:|||______________:||||:|||\n______________UUGU_GUCCCU_______CGACG_GGCA______________UCAAUGUUC\n3'-UUU...CGCGG____G______UUAGAAC_____C____UUUAAUAAUACUAC_________CCGUG...GUG-5'\n_____________|___________________________________________________|\n_____________79__________________________________________________27\n |
175 -- 181 |
28 -- 34 |
-33.2852 kcal/mol |
14.1676 kcal/mol |
9.38606 kcal/mol |
144 182@LB@ | |@LB@5'-GCU...AAUCU G UUGUGGC A UUCUG...UGG-3'@LB@ GACG CAGGGG GCUGC UCGU GGUUAUAAG@LB@ :||: |||||: ||||| :||| :||||:|||@LB@ UUGU GUCCCU CGACG GGCA UCAAUGUUC@LB@3'-UUU...CGCGG G UUAGAAC C UUUAAUAAUACUAC CCGUG...GUG-5'@LB@ | |@LB@ 79 27@LB@@LB@@LB@Energy -9.73 kcal/mol@LB@Hybridization Energy -33.2852 kcal/mol@LB@Unfolding Energy - mRNA 14.1676 kcal/mol@LB@Unfolding Energy - sRNA 9.38606 kcal/mol@LB@@LB@Position - mRNA 145 -- 181@LB@Position - sRNA 28 -- 78@LB@Position Seed - mRNA 175 -- 181@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 109 |
0.005919 |
0.1855 |
b3807 |
cyaY |
-12.33 |
0.049473 |
23 -- 64 |
29 -- 73 |
iron-dependent inhibitor of iron-sulfur cluster formation; frataxin; iron-binding and oxidizing protein |
|
_____________22__________________________________________________65\n_____________|___________________________________________________|\n5'-UGA...AGAAA________GACG___UGUAA_______C_____________A_________AUCUU...AAA-3'\n______________CAGGGAAA____UGG_____CUGCGCC_UA_______AUGA_GAG__ACAA\n______________||||||||____|||_____|||||||_||_______||||_|||__||||\n______________GUCCCUUU____ACC_____GACGCGG_AU_______UACU_CUC__UGUU\n3'-UUU...UUGUG________AGA________________C__UUAAUAA____A___AA____CCCGU...GUG-5'\n_____________|___________________________________________________|\n_____________74__________________________________________________28\n |
43 -- 49 |
53 -- 59 |
-33.7794 kcal/mol |
12.1445 kcal/mol |
9.30637 kcal/mol |
22 65@LB@ | |@LB@5'-UGA...AGAAA GACG UGUAA C A AUCUU...AAA-3'@LB@ CAGGGAAA UGG CUGCGCC UA AUGA GAG ACAA@LB@ |||||||| ||| ||||||| || |||| ||| ||||@LB@ GUCCCUUU ACC GACGCGG AU UACU CUC UGUU@LB@3'-UUU...UUGUG AGA C UUAAUAA A AA CCCGU...GUG-5'@LB@ | |@LB@ 74 28@LB@@LB@@LB@Energy -12.33 kcal/mol@LB@Hybridization Energy -33.7794 kcal/mol@LB@Unfolding Energy - mRNA 12.1445 kcal/mol@LB@Unfolding Energy - sRNA 9.30637 kcal/mol@LB@@LB@Position - mRNA 23 -- 64@LB@Position - sRNA 29 -- 73@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 53 -- 59@LB@ |
| 110 |
0.005921 |
0.1855 |
b0156 |
erpA |
-16.74 |
0.006653 |
106 -- 166 |
29 -- 94 |
iron-sulfur cluster insertion protein |
|
_____________105______________________________________________________________________167\n_____________|________________________________________________________________________|\n5'-UAG...AGCCA___A______U__AA_GA__________UAUU____AA_______________________________G__UUUGC...UAC-3'\n______________GCG_GAAUAC_UG__C__AAUACCAGGG____AGAU__UGGC_________GAUUAUUAU__UGGGUUA_AA\n______________|||_||||||_||__|__||:|||||||____|:||__||||_________:||||||||__||:||||_||\n______________CGC_CUUAUG_AC__G__UUGUGGUCCC____UUUA__ACCG_________UUAAUAAUA__ACUCAAU_UU\n3'-UUU...CCCCA___G_________GC_G___________________GA____ACGCGGCAU_________CU_______G__CCCGU...GUG-5'\n_____________|________________________________________________________________________|\n_____________95_______________________________________________________________________28\n |
157 -- 163 |
32 -- 38 |
-45.8064 kcal/mol |
11.5894 kcal/mol |
17.4809 kcal/mol |
105 167@LB@ | |@LB@5'-UAG...AGCCA A U AA GA UAUU AA G UUUGC...UAC-3'@LB@ GCG GAAUAC UG C AAUACCAGGG AGAU UGGC GAUUAUUAU UGGGUUA AA@LB@ ||| |||||| || | ||:||||||| |:|| |||| :|||||||| ||:|||| ||@LB@ CGC CUUAUG AC G UUGUGGUCCC UUUA ACCG UUAAUAAUA ACUCAAU UU@LB@3'-UUU...CCCCA G GC G GA ACGCGGCAU CU G CCCGU...GUG-5'@LB@ | |@LB@ 95 28@LB@@LB@@LB@Energy -16.74 kcal/mol@LB@Hybridization Energy -45.8064 kcal/mol@LB@Unfolding Energy - mRNA 11.5894 kcal/mol@LB@Unfolding Energy - sRNA 17.4809 kcal/mol@LB@@LB@Position - mRNA 106 -- 166@LB@Position - sRNA 29 -- 94@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 32 -- 38@LB@ |
| 118 |
0.006444 |
0.1913 |
b0189 |
rof |
-9.63 |
0.163299 |
226 -- 241 |
29 -- 45 |
modulator of Rho-dependent transcription termination |
|
_____________225_______________242\n_____________|_________________|\n5'-AGG...AAUCA_________________UAAUC...GCG-3'\n______________AUUGUGAUGA_UUACGA\n______________|||:||||||_||||:|\n______________UAAUACUACU_AAUGUU\n3'-UUU...UUUAA__________C______CCCGU...GUG-5'\n_____________|_________________|\n_____________46________________28\n |
229 -- 235 |
36 -- 42 |
-15.4032 kcal/mol |
3.82623 kcal/mol |
1.94966 kcal/mol |
225 242@LB@ | |@LB@5'-AGG...AAUCA UAAUC...GCG-3'@LB@ AUUGUGAUGA UUACGA@LB@ |||:|||||| ||||:|@LB@ UAAUACUACU AAUGUU@LB@3'-UUU...UUUAA C CCCGU...GUG-5'@LB@ | |@LB@ 46 28@LB@@LB@@LB@Energy -9.63 kcal/mol@LB@Hybridization Energy -15.4032 kcal/mol@LB@Unfolding Energy - mRNA 3.82623 kcal/mol@LB@Unfolding Energy - sRNA 1.94966 kcal/mol@LB@@LB@Position - mRNA 226 -- 241@LB@Position - sRNA 29 -- 45@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 36 -- 42@LB@ |
| 120 |
0.006631 |
0.1913 |
b0825 |
fsaA |
-14.24 |
0.020734 |
15 -- 76 |
31 -- 86 |
fructose-6-phosphate aldolase 1 |
b3946 |
_____________14_____________________________________________________________77\n_____________|______________________________________________________________|\n5'-CUU...AUACG__C____G__________CC___A___G_CGAGUA______AAU____AAAAUCAU______CUCUC...CCG-3'\n______________AC_GUGC_GAUACCGGGG__AUC_UGG_U______GCGCUG___AUUG________AGUUGC\n______________||_|:||_:|:|||:|||__|||_|||_|______||||:|___|||:________||||:|\n______________UG_CGCG_UUGUGGUCCC__UAG_ACC_A______CGCGGC___UAAU________UCAAUG\n3'-UUU...GCUUA__A____G__________UU___A___G_____________AUU____AAUACUAC______UUCCC...GUG-5'\n_____________|______________________________________________________________|\n_____________87_____________________________________________________________30\n |
26 -- 32 |
69 -- 75 |
-46.4097 kcal/mol |
15.1018 kcal/mol |
17.0646 kcal/mol |
14 77@LB@ | |@LB@5'-CUU...AUACG C G CC A G CGAGUA AAU AAAAUCAU CUCUC...CCG-3'@LB@ AC GUGC GAUACCGGGG AUC UGG U GCGCUG AUUG AGUUGC@LB@ || |:|| :|:|||:||| ||| ||| | ||||:| |||: ||||:|@LB@ UG CGCG UUGUGGUCCC UAG ACC A CGCGGC UAAU UCAAUG@LB@3'-UUU...GCUUA A G UU A G AUU AAUACUAC UUCCC...GUG-5'@LB@ | |@LB@ 87 30@LB@@LB@@LB@Energy -14.24 kcal/mol@LB@Hybridization Energy -46.4097 kcal/mol@LB@Unfolding Energy - mRNA 15.1018 kcal/mol@LB@Unfolding Energy - sRNA 17.0646 kcal/mol@LB@@LB@Position - mRNA 15 -- 76@LB@Position - sRNA 31 -- 86@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 69 -- 75@LB@ |
