8 |
0.001355 |
0.5385 |
b3915 |
fieF |
-13.87 |
0.021962 |
2 -- 39 |
50 -- 90 |
ferrous iron and zinc transporter |
|
_____________1_____________________________________________40\n_____________|_____________________________________________|\n__________5'-A_________U_____AA___A_____________A_U__C_____ACGUU...AUA-3'\n______________AAAAGUUCA_CGUUG__GCU________UUGAGU_G_AG_AACUC\n______________|||||||||_|||||__|||________|:||||_|_||_|||||\n______________UUUUCAAGU_GCAAC__CGA________AGCUCA_C_UC_UUGAG\n3'-CGC...AGGCG____________________AAUCAAUA______A____U_____AGCUU...AAG-5'\n_____________|_____________________________________________|\n_____________91____________________________________________49\n |
4 -- 10 |
82 -- 88 |
-26.5193 kcal/mol |
8.24047 kcal/mol |
4.40801 kcal/mol |
1 40@LB@ | |@LB@ 5'-A U AA A A U C ACGUU...AUA-3'@LB@ AAAAGUUCA CGUUG GCU UUGAGU G AG AACUC@LB@ ||||||||| ||||| ||| |:|||| | || |||||@LB@ UUUUCAAGU GCAAC CGA AGCUCA C UC UUGAG@LB@3'-CGC...AGGCG AAUCAAUA A U AGCUU...AAG-5'@LB@ | |@LB@ 91 49@LB@@LB@@LB@Energy -13.87 kcal/mol@LB@Hybridization Energy -26.5193 kcal/mol@LB@Unfolding Energy - mRNA 8.24047 kcal/mol@LB@Unfolding Energy - sRNA 4.40801 kcal/mol@LB@@LB@Position - mRNA 2 -- 39@LB@Position - sRNA 50 -- 90@LB@Position Seed - mRNA 4 -- 10@LB@Position Seed - sRNA 82 -- 88@LB@ |
185 |
0.03283 |
0.5559 |
b1937 |
fliE |
-12.05 |
0.046361 |
209 -- 229 |
14 -- 35 |
flagellar basal-body component |
|
_____________208____________________230\n_____________|______________________|\n5'-CUG...UCAGC___A_______AUU________UAUCA...GUU-3'\n______________GAU__CAGGGG___GAAGGGGU\n______________||:__||:|||___:|||:|||\n______________CUG__GUUCCC___UUUCUCCA\n3'-CGC...CGUCA___AA______AAU________CGGCG...AAG-5'\n_____________|______________________|\n_____________36_____________________13\n |
223 -- 229 |
14 -- 20 |
-20.5154 kcal/mol |
5.13678 kcal/mol |
3.33183 kcal/mol |
208 230@LB@ | |@LB@5'-CUG...UCAGC A AUU UAUCA...GUU-3'@LB@ GAU CAGGGG GAAGGGGU@LB@ ||: ||:||| :|||:|||@LB@ CUG GUUCCC UUUCUCCA@LB@3'-CGC...CGUCA AA AAU CGGCG...AAG-5'@LB@ | |@LB@ 36 13@LB@@LB@@LB@Energy -12.05 kcal/mol@LB@Hybridization Energy -20.5154 kcal/mol@LB@Unfolding Energy - mRNA 5.13678 kcal/mol@LB@Unfolding Energy - sRNA 3.33183 kcal/mol@LB@@LB@Position - mRNA 209 -- 229@LB@Position - sRNA 14 -- 35@LB@Position Seed - mRNA 223 -- 229@LB@Position Seed - sRNA 14 -- 20@LB@ |
180 |
0.03162 |
0.5559 |
b1941 |
fliI |
-9.97 |
0.106944 |
57 -- 70 |
74 -- 88 |
flagellum-specific ATP synthase |
|
_____________56______________71\n_____________|_______________|\n5'-CUG...ACCUU________A______GGCGC...GCG-3'\n______________AAGUUUGC__UGGCU\n______________|||||::|__|||||\n______________UUCAAGUG__ACCGA\n3'-CGC...GCGUU________CA_____AAUCA...AAG-5'\n_____________|_______________|\n_____________89______________73\n |
58 -- 64 |
81 -- 87 |
-13.0478 kcal/mol |
2.55971 kcal/mol |
0.516514 kcal/mol |
56 71@LB@ | |@LB@5'-CUG...ACCUU A GGCGC...GCG-3'@LB@ AAGUUUGC UGGCU@LB@ |||||::| |||||@LB@ UUCAAGUG ACCGA@LB@3'-CGC...GCGUU CA AAUCA...AAG-5'@LB@ | |@LB@ 89 73@LB@@LB@@LB@Energy -9.97 kcal/mol@LB@Hybridization Energy -13.0478 kcal/mol@LB@Unfolding Energy - mRNA 2.55971 kcal/mol@LB@Unfolding Energy - sRNA 0.516514 kcal/mol@LB@@LB@Position - mRNA 57 -- 70@LB@Position - sRNA 74 -- 88@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 81 -- 87@LB@ |
137 |
0.02312 |
0.5385 |
b2153 |
folE |
-12.97 |
0.031813 |
230 -- 265 |
52 -- 87 |
GTP cyclohydrolase I |
|
_____________229___________________________________266\n_____________|_____________________________________|\n5'-CUG...GCCCU________AA___G_______CG____GACU______ACCGC...ACG-3'\n______________GGUUCAUG___GC_UUAGUUG__CGAG____GGAAAC\n______________:|||||:|___||_||||||:__||||____:|||||\n______________UCAAGUGC___CG_AAUCAAU__GCUC____UCUUUG\n3'-CGC...CGUUU________AAC__A_______AA____AAC_______AGAGC...AAG-5'\n_____________|_____________________________________|\n_____________88____________________________________51\n |
243 -- 249 |
67 -- 73 |
-29.7116 kcal/mol |
12.3362 kcal/mol |
4.40736 kcal/mol |
229 266@LB@ | |@LB@5'-CUG...GCCCU AA G CG GACU ACCGC...ACG-3'@LB@ GGUUCAUG GC UUAGUUG CGAG GGAAAC@LB@ :|||||:| || ||||||: |||| :|||||@LB@ UCAAGUGC CG AAUCAAU GCUC UCUUUG@LB@3'-CGC...CGUUU AAC A AA AAC AGAGC...AAG-5'@LB@ | |@LB@ 88 51@LB@@LB@@LB@Energy -12.97 kcal/mol@LB@Hybridization Energy -29.7116 kcal/mol@LB@Unfolding Energy - mRNA 12.3362 kcal/mol@LB@Unfolding Energy - sRNA 4.40736 kcal/mol@LB@@LB@Position - mRNA 230 -- 265@LB@Position - sRNA 52 -- 87@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 67 -- 73@LB@ |
85 |
0.01519 |
0.5385 |
b0094 |
ftsA |
-12.00 |
0.047343 |
234 -- 271 |
69 -- 107 |
ATP-binding cell division FtsK recruitment protein |
|
_____________233__________________________________________272\n_____________|____________________________________________|\n5'-AAU...UAGUA_____________UGGUA___________GC_____________AGGGG...UCA-3'\n______________GGA__CUGGAGAU_____CCGCGAAGGUU__C____GCUUUAGU\n______________|||__||||||||_____||||:||:|||__|____||||||||\n______________CCU__GACCUCUA_____GGCGUUUUCAA__G____CGAAAUCA\n_________3'-CG___AG________________________GU_CAAC________AUAAG...AAG-5'\n_____________|____________________________________________|\n_____________108__________________________________________68\n |
265 -- 271 |
69 -- 75 |
-38.6824 kcal/mol |
14.7528 kcal/mol |
11.9342 kcal/mol |
233 272@LB@ | |@LB@5'-AAU...UAGUA UGGUA GC AGGGG...UCA-3'@LB@ GGA CUGGAGAU CCGCGAAGGUU C GCUUUAGU@LB@ ||| |||||||| ||||:||:||| | ||||||||@LB@ CCU GACCUCUA GGCGUUUUCAA G CGAAAUCA@LB@ 3'-CG AG GU CAAC AUAAG...AAG-5'@LB@ | |@LB@ 108 68@LB@@LB@@LB@Energy -12.00 kcal/mol@LB@Hybridization Energy -38.6824 kcal/mol@LB@Unfolding Energy - mRNA 14.7528 kcal/mol@LB@Unfolding Energy - sRNA 11.9342 kcal/mol@LB@@LB@Position - mRNA 234 -- 271@LB@Position - sRNA 69 -- 107@LB@Position Seed - mRNA 265 -- 271@LB@Position Seed - sRNA 69 -- 75@LB@ |
93 |
0.01594 |
0.5385 |
b3430 |
glgC |
-8.76 |
0.171477 |
231 -- 238 |
75 -- 82 |
glucose-1-phosphate adenylyltransferase |
|
_____________230______239\n_____________|________|\n5'-CAG...ACUUA________GCGCC...UGA-3'\n______________AUGUUGGC\n______________|:||||||\n______________UGCAACCG\n3'-CGC...UCAAG________AAAUC...AAG-5'\n_____________|________|\n_____________83_______74\n |
232 -- 238 |
75 -- 81 |
-11.9398 kcal/mol |
2.84031 kcal/mol |
0.339284 kcal/mol |
230 239@LB@ | |@LB@5'-CAG...ACUUA GCGCC...UGA-3'@LB@ AUGUUGGC@LB@ |:||||||@LB@ UGCAACCG@LB@3'-CGC...UCAAG AAAUC...AAG-5'@LB@ | |@LB@ 83 74@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -11.9398 kcal/mol@LB@Unfolding Energy - mRNA 2.84031 kcal/mol@LB@Unfolding Energy - sRNA 0.339284 kcal/mol@LB@@LB@Position - mRNA 231 -- 238@LB@Position - sRNA 75 -- 82@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 75 -- 81@LB@ |
16 |
0.002981 |
0.5385 |
b3428 |
glgP |
-10.45 |
0.088230 |
278 -- 289 |
76 -- 86 |
glycogen phosphorylase |
|
_____________277__________290\n_____________|____________|\n5'-CCA...CUGAU_______A____AAAGG...CGG-3'\n______________GUUUACG_UUGG\n______________|||:|||_||||\n______________CAAGUGC_AACC\n3'-CGC...GUUUU____________GAAAU...AAG-5'\n_____________|____________|\n_____________87___________75\n |
278 -- 284 |
80 -- 86 |
-12.981 kcal/mol |
2.0211 kcal/mol |
0.505081 kcal/mol |
277 290@LB@ | |@LB@5'-CCA...CUGAU A AAAGG...CGG-3'@LB@ GUUUACG UUGG@LB@ |||:||| ||||@LB@ CAAGUGC AACC@LB@3'-CGC...GUUUU GAAAU...AAG-5'@LB@ | |@LB@ 87 75@LB@@LB@@LB@Energy -10.45 kcal/mol@LB@Hybridization Energy -12.981 kcal/mol@LB@Unfolding Energy - mRNA 2.0211 kcal/mol@LB@Unfolding Energy - sRNA 0.505081 kcal/mol@LB@@LB@Position - mRNA 278 -- 289@LB@Position - sRNA 76 -- 86@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 80 -- 86@LB@ |
134 |
0.0229 |
0.5385 |
b3729 |
glmS |
-8.05 |
0.223933 |
255 -- 266 |
79 -- 90 |
L-glutamine:D-fructose-6-phosphate aminotransferase |
|
_____________254__________267\n_____________|____________|\n5'-CAG...UUCUU____________CGUCU...GUC-3'\n______________GAAGGUUUACGU\n______________:||:|||:||||\n______________UUUUCAAGUGCA\n3'-CGC...AGGCG____________ACCGA...AAG-5'\n_____________|____________|\n_____________91___________78\n |
260 -- 266 |
79 -- 85 |
-12.2414 kcal/mol |
3.68327 kcal/mol |
0.506924 kcal/mol |
254 267@LB@ | |@LB@5'-CAG...UUCUU CGUCU...GUC-3'@LB@ GAAGGUUUACGU@LB@ :||:|||:||||@LB@ UUUUCAAGUGCA@LB@3'-CGC...AGGCG ACCGA...AAG-5'@LB@ | |@LB@ 91 78@LB@@LB@@LB@Energy -8.05 kcal/mol@LB@Hybridization Energy -12.2414 kcal/mol@LB@Unfolding Energy - mRNA 3.68327 kcal/mol@LB@Unfolding Energy - sRNA 0.506924 kcal/mol@LB@@LB@Position - mRNA 255 -- 266@LB@Position - sRNA 79 -- 90@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 79 -- 85@LB@ |
184 |
0.03259 |
0.5559 |
b0811 |
glnH |
-9.61 |
0.123139 |
215 -- 230 |
74 -- 90 |
glutamine transporter subunit |
|
_____________214________________231\n_____________|__________________|\n5'-AUC...GUAUU_______U__________GCACU...CCG-3'\n______________AAAAGUU_CAC__UGGCU\n______________|||||||_|||__|||||\n______________UUUUCAA_GUG__ACCGA\n3'-CGC...AGGCG___________CA_____AAUCA...AAG-5'\n_____________|__________________|\n_____________91_________________73\n |
215 -- 221 |
84 -- 90 |
-14.2101 kcal/mol |
4.07847 kcal/mol |
0.517587 kcal/mol |
214 231@LB@ | |@LB@5'-AUC...GUAUU U GCACU...CCG-3'@LB@ AAAAGUU CAC UGGCU@LB@ ||||||| ||| |||||@LB@ UUUUCAA GUG ACCGA@LB@3'-CGC...AGGCG CA AAUCA...AAG-5'@LB@ | |@LB@ 91 73@LB@@LB@@LB@Energy -9.61 kcal/mol@LB@Hybridization Energy -14.2101 kcal/mol@LB@Unfolding Energy - mRNA 4.07847 kcal/mol@LB@Unfolding Energy - sRNA 0.517587 kcal/mol@LB@@LB@Position - mRNA 215 -- 230@LB@Position - sRNA 74 -- 90@LB@Position Seed - mRNA 215 -- 221@LB@Position Seed - sRNA 84 -- 90@LB@ |
139 |
0.02326 |
0.5385 |
b1651 |
gloA |
-10.25 |
0.095619 |
225 -- 233 |
75 -- 83 |
glyoxalase I Ni-dependent |
|
_____________224_______234\n_____________|_________|\n5'-UGG...UGCUG_________GAUUU...AAA-3'\n______________CGCGUUGGC\n______________|:|||||||\n______________GUGCAACCG\n3'-CGC...UUCAA_________AAAUC...AAG-5'\n_____________|_________|\n_____________84________74\n |
227 -- 233 |
75 -- 81 |
-16.4206 kcal/mol |
5.67498 kcal/mol |
0.492259 kcal/mol |
224 234@LB@ | |@LB@5'-UGG...UGCUG GAUUU...AAA-3'@LB@ CGCGUUGGC@LB@ |:|||||||@LB@ GUGCAACCG@LB@3'-CGC...UUCAA AAAUC...AAG-5'@LB@ | |@LB@ 84 74@LB@@LB@@LB@Energy -10.25 kcal/mol@LB@Hybridization Energy -16.4206 kcal/mol@LB@Unfolding Energy - mRNA 5.67498 kcal/mol@LB@Unfolding Energy - sRNA 0.492259 kcal/mol@LB@@LB@Position - mRNA 225 -- 233@LB@Position - sRNA 75 -- 83@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 75 -- 81@LB@ |