199 |
0.03481 |
0.5559 |
b0407 |
yajC |
-8.41 |
0.195839 |
88 -- 104 |
15 -- 30 |
SecYEG protein translocase auxillary subunit |
|
_____________87________________105\n_____________|_________________|\n5'-UCU...UUACG_____CUAUU_______GUAAA...UUU-3'\n______________CAAGG_____GAAGAGG\n______________|||||_____:||||||\n______________GUUCC_____UUUCUCC\n3'-CGC...CUGAA_____CAAU________ACGGC...AAG-5'\n_____________|_________________|\n_____________31________________14\n |
98 -- 104 |
15 -- 21 |
-15.1331 kcal/mol |
3.4367 kcal/mol |
3.28624 kcal/mol |
87 105@LB@ | |@LB@5'-UCU...UUACG CUAUU GUAAA...UUU-3'@LB@ CAAGG GAAGAGG@LB@ ||||| :||||||@LB@ GUUCC UUUCUCC@LB@3'-CGC...CUGAA CAAU ACGGC...AAG-5'@LB@ | |@LB@ 31 14@LB@@LB@@LB@Energy -8.41 kcal/mol@LB@Hybridization Energy -15.1331 kcal/mol@LB@Unfolding Energy - mRNA 3.4367 kcal/mol@LB@Unfolding Energy - sRNA 3.28624 kcal/mol@LB@@LB@Position - mRNA 88 -- 104@LB@Position - sRNA 15 -- 30@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 15 -- 21@LB@ |
195 |
0.03428 |
0.5559 |
b0434 |
yajG |
-10.30 |
0.093744 |
131 -- 149 |
66 -- 84 |
putative lipoprotein |
|
_____________130__________________150\n_____________|____________________|\n5'-UGG...UCCCC___C_______AAU______GAUGG...UGC-3'\n______________UCG_CGUUGGC____GUUAU\n______________||:_|||||||____|||||\n______________AGU_GCAACCG____CAAUA\n3'-CGC...UUUCA___________AAAU_____AGCUC...AAG-5'\n_____________|____________________|\n_____________85___________________65\n |
135 -- 141 |
75 -- 81 |
-17.0927 kcal/mol |
6.21917 kcal/mol |
0.5705 kcal/mol |
130 150@LB@ | |@LB@5'-UGG...UCCCC C AAU GAUGG...UGC-3'@LB@ UCG CGUUGGC GUUAU@LB@ ||: ||||||| |||||@LB@ AGU GCAACCG CAAUA@LB@3'-CGC...UUUCA AAAU AGCUC...AAG-5'@LB@ | |@LB@ 85 65@LB@@LB@@LB@Energy -10.30 kcal/mol@LB@Hybridization Energy -17.0927 kcal/mol@LB@Unfolding Energy - mRNA 6.21917 kcal/mol@LB@Unfolding Energy - sRNA 0.5705 kcal/mol@LB@@LB@Position - mRNA 131 -- 149@LB@Position - sRNA 66 -- 84@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 75 -- 81@LB@ |
179 |
0.03159 |
0.5559 |
b0790 |
ybhP |
-12.03 |
0.046743 |
250 -- 264 |
71 -- 85 |
endo/exonuclease/phosphatase family protein |
|
_____________249_____________265\n_____________|_______________|\n5'-AGU...CAAUA_____AAA_______CCGCG...UUC-3'\n______________UUCAC___GGCUUUA\n______________|||||___|||||||\n______________AAGUG___CCGAAAU\n3'-CGC...UUUUC_____CAA_______CAAUA...AAG-5'\n_____________|_______________|\n_____________86______________70\n |
258 -- 264 |
71 -- 77 |
-13.6298 kcal/mol |
1.04243 kcal/mol |
0.560731 kcal/mol |
249 265@LB@ | |@LB@5'-AGU...CAAUA AAA CCGCG...UUC-3'@LB@ UUCAC GGCUUUA@LB@ ||||| |||||||@LB@ AAGUG CCGAAAU@LB@3'-CGC...UUUUC CAA CAAUA...AAG-5'@LB@ | |@LB@ 86 70@LB@@LB@@LB@Energy -12.03 kcal/mol@LB@Hybridization Energy -13.6298 kcal/mol@LB@Unfolding Energy - mRNA 1.04243 kcal/mol@LB@Unfolding Energy - sRNA 0.560731 kcal/mol@LB@@LB@Position - mRNA 250 -- 264@LB@Position - sRNA 71 -- 85@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 71 -- 77@LB@ |
121 |
0.02058 |
0.5385 |
b0796 |
ybiH |
-9.41 |
0.133616 |
217 -- 230 |
24 -- 36 |
DUF1956 domain-containing tetR family putative transcriptional regulator |
|
_____________216____________231\n_____________|______________|\n5'-CGG...UGCCA____AA________GAACA...CCA-3'\n______________UGAC__UCAAGGGU\n______________||||__||||||||\n______________ACUG__AGUUCCCA\n3'-CGC...CCGUC____A_________AUUUU...AAG-5'\n_____________|______________|\n_____________37_____________23\n |
224 -- 230 |
24 -- 30 |
-15.9856 kcal/mol |
3.24975 kcal/mol |
3.33025 kcal/mol |
216 231@LB@ | |@LB@5'-CGG...UGCCA AA GAACA...CCA-3'@LB@ UGAC UCAAGGGU@LB@ |||| ||||||||@LB@ ACUG AGUUCCCA@LB@3'-CGC...CCGUC A AUUUU...AAG-5'@LB@ | |@LB@ 37 23@LB@@LB@@LB@Energy -9.41 kcal/mol@LB@Hybridization Energy -15.9856 kcal/mol@LB@Unfolding Energy - mRNA 3.24975 kcal/mol@LB@Unfolding Energy - sRNA 3.33025 kcal/mol@LB@@LB@Position - mRNA 217 -- 230@LB@Position - sRNA 24 -- 36@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 24 -- 30@LB@ |
21 |
0.003546 |
0.5385 |
b0820 |
ybiT |
-11.98 |
0.047670 |
3 -- 23 |
55 -- 78 |
ABC-F family putative regulatory ATPase |
|
_____________2________________________24\n_____________|________________________|\n_________5'-CC_________GCCA___________AUAUU...UUG-3'\n______________UGGC___AG____UUGGGUUGAGA\n______________||||___||____|:|:|||||||\n______________ACCG___UC____AGCUCAACUCU\n3'-CGC...GUGCA____AAA__AAUA___________UUGAG...AAG-5'\n_____________|________________________|\n_____________79_______________________54\n |
17 -- 23 |
55 -- 61 |
-19.5112 kcal/mol |
4.68968 kcal/mol |
2.84302 kcal/mol |
2 24@LB@ | |@LB@ 5'-CC GCCA AUAUU...UUG-3'@LB@ UGGC AG UUGGGUUGAGA@LB@ |||| || |:|:|||||||@LB@ ACCG UC AGCUCAACUCU@LB@3'-CGC...GUGCA AAA AAUA UUGAG...AAG-5'@LB@ | |@LB@ 79 54@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.5112 kcal/mol@LB@Unfolding Energy - mRNA 4.68968 kcal/mol@LB@Unfolding Energy - sRNA 2.84302 kcal/mol@LB@@LB@Position - mRNA 3 -- 23@LB@Position - sRNA 55 -- 78@LB@Position Seed - mRNA 17 -- 23@LB@Position Seed - sRNA 55 -- 61@LB@ |
128 |
0.02183 |
0.5385 |
b0874 |
ybjE |
-9.13 |
0.148469 |
198 -- 230 |
59 -- 85 |
putative transporter |
|
_____________197_______________________________231\n_____________|_________________________________|\n5'-GGG...GGGUU________UUCUG____GUUAAUC____U____CCCCU...UAA-3'\n______________UUCAUGUU_____GGCU_______AUUC_GGUU\n______________||||:|||_____||||_______||||_:|||\n______________AAGUGCAA_____CCGA_______UAAG_UCAA\n3'-CGC...UUUUC_________________AAUCAA_____C____CUCUU...AAG-5'\n_____________|_________________________________|\n_____________86________________________________58\n |
199 -- 205 |
78 -- 84 |
-15.801 kcal/mol |
4.95896 kcal/mol |
1.70749 kcal/mol |
197 231@LB@ | |@LB@5'-GGG...GGGUU UUCUG GUUAAUC U CCCCU...UAA-3'@LB@ UUCAUGUU GGCU AUUC GGUU@LB@ ||||:||| |||| |||| :|||@LB@ AAGUGCAA CCGA UAAG UCAA@LB@3'-CGC...UUUUC AAUCAA C CUCUU...AAG-5'@LB@ | |@LB@ 86 58@LB@@LB@@LB@Energy -9.13 kcal/mol@LB@Hybridization Energy -15.801 kcal/mol@LB@Unfolding Energy - mRNA 4.95896 kcal/mol@LB@Unfolding Energy - sRNA 1.70749 kcal/mol@LB@@LB@Position - mRNA 198 -- 230@LB@Position - sRNA 59 -- 85@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 78 -- 84@LB@ |
186 |
0.03285 |
0.5559 |
b1003 |
yccJ |
-7.53 |
0.270746 |
41 -- 54 |
75 -- 88 |
uncharacterized protein |
|
_____________40_____________55\n_____________|______________|\n5'-CCU...UUCAC_________GC___ACGCC...GGU-3'\n______________AGGUUCGCG__GGU\n______________|:||||:||__||:\n______________UUCAAGUGC__CCG\n3'-CGC...GCGUU_________AA___AAAUC...AAG-5'\n_____________|______________|\n_____________89_____________74\n |
43 -- 49 |
80 -- 86 |
-16.6206 kcal/mol |
8.57413 kcal/mol |
0.515884 kcal/mol |
40 55@LB@ | |@LB@5'-CCU...UUCAC GC ACGCC...GGU-3'@LB@ AGGUUCGCG GGU@LB@ |:||||:|| ||:@LB@ UUCAAGUGC CCG@LB@3'-CGC...GCGUU AA AAAUC...AAG-5'@LB@ | |@LB@ 89 74@LB@@LB@@LB@Energy -7.53 kcal/mol@LB@Hybridization Energy -16.6206 kcal/mol@LB@Unfolding Energy - mRNA 8.57413 kcal/mol@LB@Unfolding Energy - sRNA 0.515884 kcal/mol@LB@@LB@Position - mRNA 41 -- 54@LB@Position - sRNA 75 -- 88@LB@Position Seed - mRNA 43 -- 49@LB@Position Seed - sRNA 80 -- 86@LB@ |
200 |
0.03481 |
0.5559 |
b1058 |
yceO |
-9.40 |
0.133707 |
85 -- 100 |
70 -- 85 |
uncharacterized protein |
|
_____________84_______________101\n_____________|________________|\n5'-CCU...UUAAA_______CA_______GGGAA...GAU-3'\n______________UUUGCGU__GUUUUAG\n______________||::|||__|:|||||\n______________AAGUGCA__CGAAAUC\n3'-CGC...UUUUC_______AC_______AAUAA...AAG-5'\n_____________|________________|\n_____________86_______________69\n |
94 -- 100 |
70 -- 76 |
-11.7699 kcal/mol |
1.79867 kcal/mol |
0.567379 kcal/mol |
84 101@LB@ | |@LB@5'-CCU...UUAAA CA GGGAA...GAU-3'@LB@ UUUGCGU GUUUUAG@LB@ ||::||| |:|||||@LB@ AAGUGCA CGAAAUC@LB@3'-CGC...UUUUC AC AAUAA...AAG-5'@LB@ | |@LB@ 86 69@LB@@LB@@LB@Energy -9.40 kcal/mol@LB@Hybridization Energy -11.7699 kcal/mol@LB@Unfolding Energy - mRNA 1.79867 kcal/mol@LB@Unfolding Energy - sRNA 0.567379 kcal/mol@LB@@LB@Position - mRNA 85 -- 100@LB@Position - sRNA 70 -- 85@LB@Position Seed - mRNA 94 -- 100@LB@Position Seed - sRNA 70 -- 76@LB@ |
117 |
0.01966 |
0.5385 |
b1203 |
ychF |
-10.24 |
0.095997 |
26 -- 41 |
73 -- 87 |
catalase inhibitor protein; ATPase K+-dependent ribosome-associated |
|
_____________25_______________42\n_____________|________________|\n5'-GAA...AAUGU_______A_A______GACCA...CAU-3'\n______________GGUUUAC_G_UGGCUU\n______________:|||:||_|_||||||\n______________UCAAGUG_C_ACCGAA\n3'-CGC...CGUUU_________A______AUCAA...AAG-5'\n_____________|________________|\n_____________88_______________72\n |
26 -- 32 |
81 -- 87 |
-15.1856 kcal/mol |
4.42747 kcal/mol |
0.51474 kcal/mol |
25 42@LB@ | |@LB@5'-GAA...AAUGU A A GACCA...CAU-3'@LB@ GGUUUAC G UGGCUU@LB@ :|||:|| | ||||||@LB@ UCAAGUG C ACCGAA@LB@3'-CGC...CGUUU A AUCAA...AAG-5'@LB@ | |@LB@ 88 72@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -15.1856 kcal/mol@LB@Unfolding Energy - mRNA 4.42747 kcal/mol@LB@Unfolding Energy - sRNA 0.51474 kcal/mol@LB@@LB@Position - mRNA 26 -- 41@LB@Position - sRNA 73 -- 87@LB@Position Seed - mRNA 26 -- 32@LB@Position Seed - sRNA 81 -- 87@LB@ |
11 |
0.002269 |
0.5385 |
b1205 |
ychH |
-11.36 |
0.061344 |
181 -- 195 |
75 -- 90 |
DUF2583 family putative inner membrane protein |
|
_____________180______________196\n_____________|________________|\n5'-CAA...ACCCA___________GA___GACAU...UAC-3'\n______________GAAAGUUC_CG__GGU\n______________:|||||||_||__||:\n______________UUUUCAAG_GC__CCG\n3'-CGC...AGGCG________U__AA___AAAUC...AAG-5'\n_____________|________________|\n_____________91_______________74\n |
182 -- 188 |
83 -- 89 |
-14.0006 kcal/mol |
2.12575 kcal/mol |
0.517251 kcal/mol |
180 196@LB@ | |@LB@5'-CAA...ACCCA GA GACAU...UAC-3'@LB@ GAAAGUUC CG GGU@LB@ :||||||| || ||:@LB@ UUUUCAAG GC CCG@LB@3'-CGC...AGGCG U AA AAAUC...AAG-5'@LB@ | |@LB@ 91 74@LB@@LB@@LB@Energy -11.36 kcal/mol@LB@Hybridization Energy -14.0006 kcal/mol@LB@Unfolding Energy - mRNA 2.12575 kcal/mol@LB@Unfolding Energy - sRNA 0.517251 kcal/mol@LB@@LB@Position - mRNA 181 -- 195@LB@Position - sRNA 75 -- 90@LB@Position Seed - mRNA 182 -- 188@LB@Position Seed - sRNA 83 -- 89@LB@ |