197 |
0.0346 |
0.5559 |
b2829 |
ptsP |
-9.94 |
0.108120 |
103 -- 113 |
80 -- 90 |
PEP-protein phosphotransferase enzyme I; GAF domain containing protein |
|
_____________102_________114\n_____________|___________|\n5'-CCA...AAUGA___________AGUGU...UGG-3'\n______________AAGAGUUCGCG\n______________||:|||||:||\n______________UUUUCAAGUGC\n3'-CGC...AGGCG___________AACCG...AAG-5'\n_____________|___________|\n_____________91__________79\n |
107 -- 113 |
80 -- 86 |
-13.2227 kcal/mol |
2.77203 kcal/mol |
0.506776 kcal/mol |
102 114@LB@ | |@LB@5'-CCA...AAUGA AGUGU...UGG-3'@LB@ AAGAGUUCGCG@LB@ ||:|||||:||@LB@ UUUUCAAGUGC@LB@3'-CGC...AGGCG AACCG...AAG-5'@LB@ | |@LB@ 91 79@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -13.2227 kcal/mol@LB@Unfolding Energy - mRNA 2.77203 kcal/mol@LB@Unfolding Energy - sRNA 0.506776 kcal/mol@LB@@LB@Position - mRNA 103 -- 113@LB@Position - sRNA 80 -- 90@LB@Position Seed - mRNA 107 -- 113@LB@Position Seed - sRNA 80 -- 86@LB@ |
174 |
0.03067 |
0.5559 |
b4005 |
purD |
-11.17 |
0.066076 |
4 -- 22 |
73 -- 90 |
phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase |
|
_____________3___________________23\n_____________|___________________|\n________5'-GUG________CU__A______CUGAC...GUA-3'\n______________AAAGGUUC__CG_UGGCUU\n______________|||:||||__||_||||||\n______________UUUUCAAG__GC_ACCGAA\n3'-CGC...AGGCG________U___A______AUCAA...AAG-5'\n_____________|___________________|\n_____________91__________________72\n |
5 -- 11 |
83 -- 89 |
-16.9563 kcal/mol |
5.26463 kcal/mol |
0.517799 kcal/mol |
3 23@LB@ | |@LB@ 5'-GUG CU A CUGAC...GUA-3'@LB@ AAAGGUUC CG UGGCUU@LB@ |||:|||| || ||||||@LB@ UUUUCAAG GC ACCGAA@LB@3'-CGC...AGGCG U A AUCAA...AAG-5'@LB@ | |@LB@ 91 72@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -16.9563 kcal/mol@LB@Unfolding Energy - mRNA 5.26463 kcal/mol@LB@Unfolding Energy - sRNA 0.517799 kcal/mol@LB@@LB@Position - mRNA 4 -- 22@LB@Position - sRNA 73 -- 90@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 83 -- 89@LB@ |
103 |
0.01739 |
0.5385 |
b0945 |
pyrD |
-8.62 |
0.180746 |
193 -- 204 |
79 -- 90 |
dihydro-orotate oxidase FMN-linked |
|
_____________192__________205\n_____________|____________|\n5'-UGU...UCCAG____________ACUAC...CGU-3'\n______________GAGAGUUCAUGU\n______________:|:||||||:||\n______________UUUUCAAGUGCA\n3'-CGC...AGGCG____________ACCGA...AAG-5'\n_____________|____________|\n_____________91___________78\n |
198 -- 204 |
79 -- 85 |
-13.8118 kcal/mol |
4.6828 kcal/mol |
0.506924 kcal/mol |
192 205@LB@ | |@LB@5'-UGU...UCCAG ACUAC...CGU-3'@LB@ GAGAGUUCAUGU@LB@ :|:||||||:||@LB@ UUUUCAAGUGCA@LB@3'-CGC...AGGCG ACCGA...AAG-5'@LB@ | |@LB@ 91 78@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -13.8118 kcal/mol@LB@Unfolding Energy - mRNA 4.6828 kcal/mol@LB@Unfolding Energy - sRNA 0.506924 kcal/mol@LB@@LB@Position - mRNA 193 -- 204@LB@Position - sRNA 79 -- 90@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 79 -- 85@LB@ |
193 |
0.03391 |
0.5559 |
b3642 |
pyrE |
-10.20 |
0.097546 |
70 -- 90 |
57 -- 80 |
orotate phosphoribosyltransferase |
|
_____________69_______________________91\n_____________|________________________|\n5'-CGG...AUCUU_______C___CC_______GG__AUCGA...AUU-3'\n______________GUUGGCU_UGG_____CGAG__GA\n______________|||||||_|:|_____||||__||\n______________CAACCGA_AUC_____GCUC__CU\n3'-CGC...AAGUG_______A___AAUAA____AA__CUUUG...AAG-5'\n_____________|________________________|\n_____________81_______________________56\n |
70 -- 76 |
74 -- 80 |
-18.9167 kcal/mol |
7.49492 kcal/mol |
1.21861 kcal/mol |
69 91@LB@ | |@LB@5'-CGG...AUCUU C CC GG AUCGA...AUU-3'@LB@ GUUGGCU UGG CGAG GA@LB@ ||||||| |:| |||| ||@LB@ CAACCGA AUC GCUC CU@LB@3'-CGC...AAGUG A AAUAA AA CUUUG...AAG-5'@LB@ | |@LB@ 81 56@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -18.9167 kcal/mol@LB@Unfolding Energy - mRNA 7.49492 kcal/mol@LB@Unfolding Energy - sRNA 1.21861 kcal/mol@LB@@LB@Position - mRNA 70 -- 90@LB@Position - sRNA 57 -- 80@LB@Position Seed - mRNA 70 -- 76@LB@Position Seed - sRNA 74 -- 80@LB@ |
15 |
0.002894 |
0.5385 |
b2780 |
pyrG |
-11.46 |
0.058961 |
111 -- 140 |
60 -- 90 |
CTP synthetase |
|
_____________110_______________________________141\n_____________|_________________________________|\n5'-UGU...AUAAU________________ACA___CA_________AUACU...GCC-3'\n______________GAAAGUUUG___UGGC___GGU__UGUUCGGGU\n______________:||||||::___||||___:||__|:||||:||\n______________UUUUCAAGU___ACCG___UCA__AUAAGCUCA\n3'-CGC...AGGCG_________GCA____AAA______________ACUCU...AAG-5'\n_____________|_________________________________|\n_____________91________________________________59\n |
134 -- 140 |
60 -- 66 |
-21.5125 kcal/mol |
8.34782 kcal/mol |
1.70935 kcal/mol |
110 141@LB@ | |@LB@5'-UGU...AUAAU ACA CA AUACU...GCC-3'@LB@ GAAAGUUUG UGGC GGU UGUUCGGGU@LB@ :||||||:: |||| :|| |:||||:||@LB@ UUUUCAAGU ACCG UCA AUAAGCUCA@LB@3'-CGC...AGGCG GCA AAA ACUCU...AAG-5'@LB@ | |@LB@ 91 59@LB@@LB@@LB@Energy -11.46 kcal/mol@LB@Hybridization Energy -21.5125 kcal/mol@LB@Unfolding Energy - mRNA 8.34782 kcal/mol@LB@Unfolding Energy - sRNA 1.70935 kcal/mol@LB@@LB@Position - mRNA 111 -- 140@LB@Position - sRNA 60 -- 90@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 60 -- 66@LB@ |
163 |
0.02879 |
0.5559 |
b4244 |
pyrI |
-5.82 |
0.477897 |
276 -- 293 |
60 -- 77 |
aspartate carbamoyltransferase regulatory subunit |
|
_____________275________________294\n_____________|__________________|\n5'-UUC...AGAUC_______AGCUG______CUGUUCA-3'\n______________GGUUUUA_____UUGAGU\n______________||:||||_____|:||||\n______________CCGAAAU_____AGCUCA\n3'-CGC...UGCAA_______CAAUA______ACUCU...AAG-5'\n_____________|__________________|\n_____________78_________________59\n |
276 -- 282 |
71 -- 77 |
-12.7499 kcal/mol |
6.13118 kcal/mol |
0.796465 kcal/mol |
275 294@LB@ | |@LB@5'-UUC...AGAUC AGCUG CUGUUCA-3'@LB@ GGUUUUA UUGAGU@LB@ ||:|||| |:||||@LB@ CCGAAAU AGCUCA@LB@3'-CGC...UGCAA CAAUA ACUCU...AAG-5'@LB@ | |@LB@ 78 59@LB@@LB@@LB@Energy -5.82 kcal/mol@LB@Hybridization Energy -12.7499 kcal/mol@LB@Unfolding Energy - mRNA 6.13118 kcal/mol@LB@Unfolding Energy - sRNA 0.796465 kcal/mol@LB@@LB@Position - mRNA 276 -- 293@LB@Position - sRNA 60 -- 77@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 71 -- 77@LB@ |
140 |
0.02329 |
0.5385 |
b3026 |
qseC |
-7.47 |
0.277092 |
174 -- 202 |
52 -- 78 |
quorum sensing sensory histidine kinase in two-component regulatory system with QseB |
|
_____________173___________________________203\n_____________|_____________________________|\n5'-AAA...GUGCA____A_______CA_AUU__G________GAAAU...GGA-3'\n______________UGGU_UUGGUUA__C___AG_UGAGAAAU\n______________|||:_||:||||__|___||_|||||||:\n______________ACCG_AAUCAAU__G___UC_ACUCUUUG\n3'-CGC...GUGCA____A_______AA_C____A________AGAGC...AAG-5'\n_____________|_____________________________|\n_____________79____________________________51\n |
196 -- 202 |
52 -- 58 |
-18.6962 kcal/mol |
6.8409 kcal/mol |
4.38944 kcal/mol |
173 203@LB@ | |@LB@5'-AAA...GUGCA A CA AUU G GAAAU...GGA-3'@LB@ UGGU UUGGUUA C AG UGAGAAAU@LB@ |||: ||:|||| | || |||||||:@LB@ ACCG AAUCAAU G UC ACUCUUUG@LB@3'-CGC...GUGCA A AA C A AGAGC...AAG-5'@LB@ | |@LB@ 79 51@LB@@LB@@LB@Energy -7.47 kcal/mol@LB@Hybridization Energy -18.6962 kcal/mol@LB@Unfolding Energy - mRNA 6.8409 kcal/mol@LB@Unfolding Energy - sRNA 4.38944 kcal/mol@LB@@LB@Position - mRNA 174 -- 202@LB@Position - sRNA 52 -- 78@LB@Position Seed - mRNA 196 -- 202@LB@Position Seed - sRNA 52 -- 58@LB@ |
61 |
0.01179 |
0.5385 |
b3748 |
rbsD |
-10.58 |
0.083988 |
129 -- 141 |
72 -- 84 |
D-ribose pyranase |
|
_____________128___________142\n_____________|_____________|\n5'-GGU...UAACG_____A_______CCCAA...UCC-3'\n______________UCACG_UGGUUUU\n______________|||||_|||:|||\n______________AGUGC_ACCGAAA\n3'-CGC...UUUCA_____A_______UCAAU...AAG-5'\n_____________|_____________|\n_____________85____________71\n |
135 -- 141 |
72 -- 78 |
-14.1499 kcal/mol |
3.06287 kcal/mol |
0.509125 kcal/mol |
128 142@LB@ | |@LB@5'-GGU...UAACG A CCCAA...UCC-3'@LB@ UCACG UGGUUUU@LB@ ||||| |||:|||@LB@ AGUGC ACCGAAA@LB@3'-CGC...UUUCA A UCAAU...AAG-5'@LB@ | |@LB@ 85 71@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -14.1499 kcal/mol@LB@Unfolding Energy - mRNA 3.06287 kcal/mol@LB@Unfolding Energy - sRNA 0.509125 kcal/mol@LB@@LB@Position - mRNA 129 -- 141@LB@Position - sRNA 72 -- 84@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 72 -- 78@LB@ |
114 |
0.01931 |
0.5385 |
b1951 |
rcsA |
-10.71 |
0.079523 |
269 -- 285 |
16 -- 29 |
transcriptional regulator of colanic acid capsular biosynthesis |
|
_____________268_______________286\n_____________|_________________|\n5'-GUU...AGUAG__________AAA____AAAUC...UUG-3'\n______________AGGGGUUAAA___AGAG\n______________|:||||||||___||||\n______________UUCCCAAUUU___UCUC\n3'-CGC...UGAAG_________________CACGG...AAG-5'\n_____________|_________________|\n_____________30________________15\n |
272 -- 278 |
20 -- 26 |
-15.5636 kcal/mol |
1.76121 kcal/mol |
3.08831 kcal/mol |
268 286@LB@ | |@LB@5'-GUU...AGUAG AAA AAAUC...UUG-3'@LB@ AGGGGUUAAA AGAG@LB@ |:|||||||| ||||@LB@ UUCCCAAUUU UCUC@LB@3'-CGC...UGAAG CACGG...AAG-5'@LB@ | |@LB@ 30 15@LB@@LB@@LB@Energy -10.71 kcal/mol@LB@Hybridization Energy -15.5636 kcal/mol@LB@Unfolding Energy - mRNA 1.76121 kcal/mol@LB@Unfolding Energy - sRNA 3.08831 kcal/mol@LB@@LB@Position - mRNA 269 -- 285@LB@Position - sRNA 16 -- 29@LB@Position Seed - mRNA 272 -- 278@LB@Position Seed - sRNA 20 -- 26@LB@ |
109 |
0.0187 |
0.5385 |
b2616 |
recN |
-10.46 |
0.088138 |
200 -- 208 |
75 -- 83 |
recombination and repair protein |
|
_____________199_______209\n_____________|_________|\n5'-UGA...ACGAC_________ACAAC...CGG-3'\n______________UAUGUUGGC\n______________:|:||||||\n______________GUGCAACCG\n3'-CGC...UUCAA_________AAAUC...AAG-5'\n_____________|_________|\n_____________84________74\n |
202 -- 208 |
75 -- 81 |
-13.4657 kcal/mol |
2.51607 kcal/mol |
0.492259 kcal/mol |
199 209@LB@ | |@LB@5'-UGA...ACGAC ACAAC...CGG-3'@LB@ UAUGUUGGC@LB@ :|:||||||@LB@ GUGCAACCG@LB@3'-CGC...UUCAA AAAUC...AAG-5'@LB@ | |@LB@ 84 74@LB@@LB@@LB@Energy -10.46 kcal/mol@LB@Hybridization Energy -13.4657 kcal/mol@LB@Unfolding Energy - mRNA 2.51607 kcal/mol@LB@Unfolding Energy - sRNA 0.492259 kcal/mol@LB@@LB@Position - mRNA 200 -- 208@LB@Position - sRNA 75 -- 83@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 75 -- 81@LB@ |