46 |
0.01036 |
0.599 |
lmo2695 |
N/A |
-19.87 |
0.010617 |
150 -- 211 |
156 -- 209 |
dihydroxyacetone kinase subunit DhaK |
|
_____________149_________________________________________________________________212\n_____________|___________________________________________________________________|\n5'-UUA...UUCUA____A____AAU_____________________UAUAAAGGA____UUU__UC______________UCUUA...CUC-3'\n______________GUAA_GGGA___UGAGGUA_AGA___GGACUAU_________GGUU___UG__AGAUGAA_GAAGAU\n______________:|||_||||___|||||:|_|||___|:||||:_________||::___||__|||||||_|||:|:\n______________UAUU_CCCU___ACUCCGU_UCU___CUUGAUG_________CCGG___AC__UCUACUU_CUUUUG\n3'-GUU...AUACG____G______________A___GUA_______UG___________UU____________A______UUUAU...GGA-5'\n_____________|___________________________________________________________________|\n_____________210_________________________________________________________________155\n |
199 -- 205 |
163 -- 169 |
-36.4151 kcal/mol |
9.16424 kcal/mol |
18.7057 kcal/mol |
149 212@LB@ | |@LB@5'-UUA...UUCUA A AAU UAUAAAGGA UUU UC UCUUA...CUC-3'@LB@ GUAA GGGA UGAGGUA AGA GGACUAU GGUU UG AGAUGAA GAAGAU@LB@ :||| |||| |||||:| ||| |:||||: ||:: || ||||||| |||:|:@LB@ UAUU CCCU ACUCCGU UCU CUUGAUG CCGG AC UCUACUU CUUUUG@LB@3'-GUU...AUACG G A GUA UG UU A UUUAU...GGA-5'@LB@ | |@LB@ 210 155@LB@@LB@@LB@Energy -19.87 kcal/mol@LB@Hybridization Energy -36.4151 kcal/mol@LB@Unfolding Energy - mRNA 9.16424 kcal/mol@LB@Unfolding Energy - sRNA 18.7057 kcal/mol@LB@@LB@Position - mRNA 150 -- 211@LB@Position - sRNA 156 -- 209@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 163 -- 169@LB@ |
189 |
0.05497 |
0.7607 |
lmo1156 |
N/A |
-15.46 |
0.080118 |
37 -- 70 |
155 -- 186 |
diol dehydratase-reactivating factor large subunit |
|
_____________36________________71\n_____________|_________________|\n5'-UAU...AAAUG______A__________UAUAU...CUA-3'\n______________CGGUGA_AUGAAUGAAG\n______________|::|||_|||||||||:\n______________GUUACU_UACUUACUUU\n3'-GUU...UGCCG______C__________UGUUU...GGA-5'\n_____________|_________________|\n_____________187_______________154\n |
200 -- 206 |
158 -- 164 |
-15.35 kcal/mol |
3.5534 kcal/mol |
0.871719 kcal/mol |
36 71@LB@ | |@LB@5'-UAU...AAAUG A UAUAU...CUA-3'@LB@ CGGUGA AUGAAUGAAG@LB@ |::||| |||||||||:@LB@ GUUACU UACUUACUUU@LB@3'-GUU...UGCCG C UGUUU...GGA-5'@LB@ | |@LB@ 187 154@LB@@LB@@LB@Energy -15.46 kcal/mol@LB@Hybridization Energy -15.35 kcal/mol@LB@Unfolding Energy - mRNA 3.5534 kcal/mol@LB@Unfolding Energy - sRNA 0.871719 kcal/mol@LB@@LB@Position - mRNA 37 -- 70@LB@Position - sRNA 155 -- 186@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 158 -- 164@LB@ |
16 |
0.003215 |
0.4469 |
lmo1403 |
mutS |
-20.74 |
0.006867 |
183 -- 222 |
169 -- 209 |
DNA mismatch repair protein MutS |
|
_____________182________________223\n_____________|__________________|\n5'-ACG...UGCUA__________________AGAAG...UGU-3'\n______________UAAUGAGA_GGAUGAAAA\n______________:|||||||_|:|||||||\n______________GUUACUCU_CUUACUUUU\n3'-GUU...UGCCG________A_________GUUUA...GGA-5'\n_____________|__________________|\n_____________210________________168\n |
172 -- 178 |
157 -- 163 |
-16.7756 kcal/mol |
1.79354 kcal/mol |
0.933292 kcal/mol |
182 223@LB@ | |@LB@5'-ACG...UGCUA AGAAG...UGU-3'@LB@ UAAUGAGA GGAUGAAAA@LB@ :||||||| |:|||||||@LB@ GUUACUCU CUUACUUUU@LB@3'-GUU...UGCCG A GUUUA...GGA-5'@LB@ | |@LB@ 210 168@LB@@LB@@LB@Energy -20.74 kcal/mol@LB@Hybridization Energy -16.7756 kcal/mol@LB@Unfolding Energy - mRNA 1.79354 kcal/mol@LB@Unfolding Energy - sRNA 0.933292 kcal/mol@LB@@LB@Position - mRNA 183 -- 222@LB@Position - sRNA 169 -- 209@LB@Position Seed - mRNA 172 -- 178@LB@Position Seed - sRNA 157 -- 163@LB@ |
161 |
0.04429 |
0.7375 |
lmo0588 |
N/A |
-15.80 |
0.069486 |
3 -- 42 |
156 -- 202 |
DNA photolyase |
|
_____________2____________43\n_____________|____________|\n5'-UUG...CUUAU____________UAUGA...AAG-3'\n______________GUGGAUGAAAGC\n______________:||:||||||:|\n______________UACUUACUUUUG\n3'-GUU...UACUC____________UUUAU...GGA-5'\n_____________|____________|\n_____________203__________155\n |
36 -- 42 |
156 -- 162 |
-13.6691 kcal/mol |
1.75048 kcal/mol |
0.849227 kcal/mol |
2 43@LB@ | |@LB@5'-UUG...CUUAU UAUGA...AAG-3'@LB@ GUGGAUGAAAGC@LB@ :||:||||||:|@LB@ UACUUACUUUUG@LB@3'-GUU...UACUC UUUAU...GGA-5'@LB@ | |@LB@ 203 155@LB@@LB@@LB@Energy -15.80 kcal/mol@LB@Hybridization Energy -13.6691 kcal/mol@LB@Unfolding Energy - mRNA 1.75048 kcal/mol@LB@Unfolding Energy - sRNA 0.849227 kcal/mol@LB@@LB@Position - mRNA 3 -- 42@LB@Position - sRNA 156 -- 202@LB@Position Seed - mRNA 36 -- 42@LB@Position Seed - sRNA 156 -- 162@LB@ |
130 |
0.03486 |
0.6968 |
lmo1231 |
N/A |
-15.49 |
0.079293 |
19 -- 84 |
118 -- 185 |
DNA polymerase beta |
|
_____________18___________________85\n_____________|____________________|\n5'-UCU...UUGCC__________CU________CGCCA...GCA-3'\n______________CAGUG_GAUG__UGAAAACA\n______________||:||_||||__||||||||\n______________GUUAC_CUAC__ACUUUUGU\n3'-GUU...UGCCG_____U____UU________UUAUU...GGA-5'\n_____________|____________________|\n_____________186__________________117\n |
46 -- 52 |
155 -- 161 |
-18.0743 kcal/mol |
4.62758 kcal/mol |
0.95817 kcal/mol |
18 85@LB@ | |@LB@5'-UCU...UUGCC CU CGCCA...GCA-3'@LB@ CAGUG GAUG UGAAAACA@LB@ ||:|| |||| ||||||||@LB@ GUUAC CUAC ACUUUUGU@LB@3'-GUU...UGCCG U UU UUAUU...GGA-5'@LB@ | |@LB@ 186 117@LB@@LB@@LB@Energy -15.49 kcal/mol@LB@Hybridization Energy -18.0743 kcal/mol@LB@Unfolding Energy - mRNA 4.62758 kcal/mol@LB@Unfolding Energy - sRNA 0.95817 kcal/mol@LB@@LB@Position - mRNA 19 -- 84@LB@Position - sRNA 118 -- 185@LB@Position Seed - mRNA 46 -- 52@LB@Position Seed - sRNA 155 -- 161@LB@ |
156 |
0.04133 |
0.7058 |
lmo1481 |
holA |
-16.45 |
0.052293 |
189 -- 224 |
151 -- 199 |
DNA polymerase III subunit delta |
|
_____________188_________225\n_____________|___________|\n5'-CAA...UGCCA___________GAUAC...UUU-3'\n______________GAAUGGAAACA\n______________|||||:|||||\n______________CUUACUUUUGU\n3'-GUU...CUCUA___________UUAUU...GGA-5'\n_____________|___________|\n_____________200_________150\n |
213 -- 219 |
156 -- 162 |
-12.8572 kcal/mol |
1.78423 kcal/mol |
0.853601 kcal/mol |
188 225@LB@ | |@LB@5'-CAA...UGCCA GAUAC...UUU-3'@LB@ GAAUGGAAACA@LB@ |||||:|||||@LB@ CUUACUUUUGU@LB@3'-GUU...CUCUA UUAUU...GGA-5'@LB@ | |@LB@ 200 150@LB@@LB@@LB@Energy -16.45 kcal/mol@LB@Hybridization Energy -12.8572 kcal/mol@LB@Unfolding Energy - mRNA 1.78423 kcal/mol@LB@Unfolding Energy - sRNA 0.853601 kcal/mol@LB@@LB@Position - mRNA 189 -- 224@LB@Position - sRNA 151 -- 199@LB@Position Seed - mRNA 213 -- 219@LB@Position Seed - sRNA 156 -- 162@LB@ |
13 |
0.002947 |
0.4469 |
lmo0233 |
N/A |
-20.88 |
0.006381 |
238 -- 276 |
156 -- 198 |
DNA repair protein RadA |
|
_____________237_____________________________________________277\n_____________|_______________________________________________|\n5'-AAA...GUGUC______GU__________________AA___________________UCCGA...CNN-3'\n______________AGGCAU__GGAUAUGAAU____CGGC__AAUG_GAUGG__GAAAAUG\n______________||||||__:||:|||||:____||||__||||_||||:__|||||::\n______________UCCGUA__UCUGUACUUG____GCCG__UUAC_CUACU__CUUUUGU\n3'-GUU...CCUAC__________________AUGU____G_____U_____UA_______UUAUU...GGA-5'\n_____________|_______________________________________________|\n_____________199_____________________________________________155\n |
271 -- 277 |
155 -- 161 |
-35.3246 kcal/mol |
8.28493 kcal/mol |
13.976 kcal/mol |
237 277@LB@ | |@LB@5'-AAA...GUGUC GU AA UCCGA...CNN-3'@LB@ AGGCAU GGAUAUGAAU CGGC AAUG GAUGG GAAAAUG@LB@ |||||| :||:|||||: |||| |||| ||||: |||||::@LB@ UCCGUA UCUGUACUUG GCCG UUAC CUACU CUUUUGU@LB@3'-GUU...CCUAC AUGU G U UA UUAUU...GGA-5'@LB@ | |@LB@ 199 155@LB@@LB@@LB@Energy -20.88 kcal/mol@LB@Hybridization Energy -35.3246 kcal/mol@LB@Unfolding Energy - mRNA 8.28493 kcal/mol@LB@Unfolding Energy - sRNA 13.976 kcal/mol@LB@@LB@Position - mRNA 238 -- 276@LB@Position - sRNA 156 -- 198@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 155 -- 161@LB@ |
163 |
0.04467 |
0.7375 |
lmo1286 |
parE |
-16.49 |
0.051436 |
172 -- 223 |
160 -- 211 |
DNA topoisomerase IV subunit B |
|
_____________171____________________________224\n_____________|______________________________|\n5'-CUU...AAUCA______UAA__________AU_________UUUUA...UAC-3'\n______________GCUAGU___UGCUAUUCUG____AAGGUGG\n______________:|||||___|||:|||||:____|||:|||\n______________UGAUCA___ACGGUAAGAU____UUCUACC\n3'-GUU...CAGAC___________________AACC_______UAUGU...GGA-5'\n_____________|______________________________|\n_____________212____________________________159\n |
135 -- 141 |
96 -- 102 |
-24.989 kcal/mol |
7.49229 kcal/mol |
9.10061 kcal/mol |
171 224@LB@ | |@LB@5'-CUU...AAUCA UAA AU UUUUA...UAC-3'@LB@ GCUAGU UGCUAUUCUG AAGGUGG@LB@ :||||| |||:|||||: |||:|||@LB@ UGAUCA ACGGUAAGAU UUCUACC@LB@3'-GUU...CAGAC AACC UAUGU...GGA-5'@LB@ | |@LB@ 212 159@LB@@LB@@LB@Energy -16.49 kcal/mol@LB@Hybridization Energy -24.989 kcal/mol@LB@Unfolding Energy - mRNA 7.49229 kcal/mol@LB@Unfolding Energy - sRNA 9.10061 kcal/mol@LB@@LB@Position - mRNA 172 -- 223@LB@Position - sRNA 160 -- 211@LB@Position Seed - mRNA 135 -- 141@LB@Position Seed - sRNA 96 -- 102@LB@ |
24 |
0.004153 |
0.4656 |
lmo1386 |
N/A |
-22.14 |
0.003328 |
2 -- 37 |
155 -- 186 |
DNA translocase |
|
_____________1____________________________________38\n_____________|____________________________________|\n__________5'-G___G________G__AAGCU______CAC_______CCGCA...UUA-3'\n______________GAA_UACGCGGC_GA_____GAUGAA___GAAAACA\n______________|||_|||:||||_:|_____||||||___|||||||\n______________CUU_AUGUGCCG_UU_____CUACUU___CUUUUGU\n3'-GUU...CUGUA___G________G__ACU________A_________UUAUU...GGA-5'\n_____________|____________________________________|\n_____________187__________________________________154\n |
31 -- 37 |
155 -- 161 |
-32.0969 kcal/mol |
6.67763 kcal/mol |
9.66922 kcal/mol |
1 38@LB@ | |@LB@ 5'-G G G AAGCU CAC CCGCA...UUA-3'@LB@ GAA UACGCGGC GA GAUGAA GAAAACA@LB@ ||| |||:|||| :| |||||| |||||||@LB@ CUU AUGUGCCG UU CUACUU CUUUUGU@LB@3'-GUU...CUGUA G G ACU A UUAUU...GGA-5'@LB@ | |@LB@ 187 154@LB@@LB@@LB@Energy -22.14 kcal/mol@LB@Hybridization Energy -32.0969 kcal/mol@LB@Unfolding Energy - mRNA 6.67763 kcal/mol@LB@Unfolding Energy - sRNA 9.66922 kcal/mol@LB@@LB@Position - mRNA 2 -- 37@LB@Position - sRNA 155 -- 186@LB@Position Seed - mRNA 31 -- 37@LB@Position Seed - sRNA 155 -- 161@LB@ |
183 |
0.0534 |
0.7607 |
lmo2583 |
N/A |
-16.44 |
0.052604 |
178 -- 212 |
151 -- 181 |
DNA-binding response regulator |
|
_____________177___________________________213\n_____________|_____________________________|\n5'-UAA...AAAUA_G_____AA______C_____________AACAA...AUG-3'\n______________A_ACGGU__GGUGAG___GGUGAAAAUGA\n______________|_||||:__::||||___::||||||::|\n______________U_UGCCG__UUACUC___UUACUUUUGUU\n3'-GUU...CUUGA_G_____G_______UAC___________UAUUA...GGA-5'\n_____________|_____________________________|\n_____________182___________________________150\n |
197 -- 203 |
155 -- 161 |
-21.6156 kcal/mol |
3.93053 kcal/mol |
8.33518 kcal/mol |
177 213@LB@ | |@LB@5'-UAA...AAAUA G AA C AACAA...AUG-3'@LB@ A ACGGU GGUGAG GGUGAAAAUGA@LB@ | ||||: ::|||| ::||||||::|@LB@ U UGCCG UUACUC UUACUUUUGUU@LB@3'-GUU...CUUGA G G UAC UAUUA...GGA-5'@LB@ | |@LB@ 182 150@LB@@LB@@LB@Energy -16.44 kcal/mol@LB@Hybridization Energy -21.6156 kcal/mol@LB@Unfolding Energy - mRNA 3.93053 kcal/mol@LB@Unfolding Energy - sRNA 8.33518 kcal/mol@LB@@LB@Position - mRNA 178 -- 212@LB@Position - sRNA 151 -- 181@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 155 -- 161@LB@ |