177 |
0.05015 |
0.7607 |
lmo1905 |
cca |
-16.43 |
0.052746 |
154 -- 208 |
160 -- 211 |
tRNA CCA-pyrophosphorylase |
|
_____________153_______________209\n_____________|_________________|\n5'-UUA...AGGAG______CA_________CGUUU...UGC-3'\n______________CGAUGA__GAUGAAUGA\n______________|:||||__|||||||||\n______________GUUACU__CUACUUACU\n3'-GUU...UGCCG_________________UUUGU...GGA-5'\n_____________|_________________|\n_____________212_______________159\n |
202 -- 208 |
160 -- 166 |
-15.3935 kcal/mol |
2.32419 kcal/mol |
0.846187 kcal/mol |
153 209@LB@ | |@LB@5'-UUA...AGGAG CA CGUUU...UGC-3'@LB@ CGAUGA GAUGAAUGA@LB@ |:|||| |||||||||@LB@ GUUACU CUACUUACU@LB@3'-GUU...UGCCG UUUGU...GGA-5'@LB@ | |@LB@ 212 159@LB@@LB@@LB@Energy -16.43 kcal/mol@LB@Hybridization Energy -15.3935 kcal/mol@LB@Unfolding Energy - mRNA 2.32419 kcal/mol@LB@Unfolding Energy - sRNA 0.846187 kcal/mol@LB@@LB@Position - mRNA 154 -- 208@LB@Position - sRNA 160 -- 211@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 160 -- 166@LB@ |
79 |
0.02126 |
0.6733 |
lmo1172 |
N/A |
-17.83 |
0.028138 |
200 -- 242 |
163 -- 210 |
two-component response regulator |
|
_____________199_________243\n_____________|___________|\n5'-CAC...CAGGA___________AAUUG...UAG-3'\n______________AUGAAUGGAAG\n______________|||||||:||:\n______________UACUUACUUUU\n3'-GUU...UACUC___________GUUUA...GGA-5'\n_____________|___________|\n_____________211_________162\n |
214 -- 220 |
157 -- 163 |
-10.013 kcal/mol |
1.15656 kcal/mol |
0.82573 kcal/mol |
199 243@LB@ | |@LB@5'-CAC...CAGGA AAUUG...UAG-3'@LB@ AUGAAUGGAAG@LB@ |||||||:||:@LB@ UACUUACUUUU@LB@3'-GUU...UACUC GUUUA...GGA-5'@LB@ | |@LB@ 211 162@LB@@LB@@LB@Energy -17.83 kcal/mol@LB@Hybridization Energy -10.013 kcal/mol@LB@Unfolding Energy - mRNA 1.15656 kcal/mol@LB@Unfolding Energy - sRNA 0.82573 kcal/mol@LB@@LB@Position - mRNA 200 -- 242@LB@Position - sRNA 163 -- 210@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 157 -- 163@LB@ |
144 |
0.03753 |
0.6968 |
lmo2422 |
N/A |
-16.62 |
0.048504 |
29 -- 68 |
172 -- 209 |
two-component response regulator |
|
_____________28___________________________________69\n_____________|____________________________________|\n5'-AUG...AUUCG____________AAAU_______G___U________UUUAU...AUG-3'\n______________CUAUGU__GACG____UGAGGCA_AGA_UAUGAAUU\n______________|||||:__:|||____|||||||_|||_:|||||:|\n______________GAUACG__UUGC____ACUCCGU_UCU_GUACUUGA\n3'-GUU...CCGCG______UA____CCU________A____________UGUGC...GGA-5'\n_____________|____________________________________|\n_____________210__________________________________171\n |
39 -- 45 |
194 -- 200 |
-29.3631 kcal/mol |
6.47642 kcal/mol |
13.3074 kcal/mol |
28 69@LB@ | |@LB@5'-AUG...AUUCG AAAU G U UUUAU...AUG-3'@LB@ CUAUGU GACG UGAGGCA AGA UAUGAAUU@LB@ |||||: :||| ||||||| ||| :|||||:|@LB@ GAUACG UUGC ACUCCGU UCU GUACUUGA@LB@3'-GUU...CCGCG UA CCU A UGUGC...GGA-5'@LB@ | |@LB@ 210 171@LB@@LB@@LB@Energy -16.62 kcal/mol@LB@Hybridization Energy -29.3631 kcal/mol@LB@Unfolding Energy - mRNA 6.47642 kcal/mol@LB@Unfolding Energy - sRNA 13.3074 kcal/mol@LB@@LB@Position - mRNA 29 -- 68@LB@Position - sRNA 172 -- 209@LB@Position Seed - mRNA 39 -- 45@LB@Position Seed - sRNA 194 -- 200@LB@ |
92 |
0.02404 |
0.6733 |
lmo1947 |
resE |
-16.63 |
0.048416 |
181 -- 212 |
141 -- 170 |
two-component sensor histidine kinas |
|
_____________180_________________213\n_____________|___________________|\n5'-AAG...ACCGA_______AUA_________UUGGA...UUU-3'\n______________GGUGAGA___GAUGAAGAU\n______________::|||||___:|||||:|:\n______________UUACUCU___UUACUUUUG\n3'-GUU...GCCGG_______AC__________UUUAU...GGA-5'\n_____________|___________________|\n_____________171_________________140\n |
202 -- 208 |
156 -- 162 |
-13.4823 kcal/mol |
2.25638 kcal/mol |
0.941471 kcal/mol |
180 213@LB@ | |@LB@5'-AAG...ACCGA AUA UUGGA...UUU-3'@LB@ GGUGAGA GAUGAAGAU@LB@ ::||||| :|||||:|:@LB@ UUACUCU UUACUUUUG@LB@3'-GUU...GCCGG AC UUUAU...GGA-5'@LB@ | |@LB@ 171 140@LB@@LB@@LB@Energy -16.63 kcal/mol@LB@Hybridization Energy -13.4823 kcal/mol@LB@Unfolding Energy - mRNA 2.25638 kcal/mol@LB@Unfolding Energy - sRNA 0.941471 kcal/mol@LB@@LB@Position - mRNA 181 -- 212@LB@Position - sRNA 141 -- 170@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 156 -- 162@LB@ |
179 |
0.05074 |
0.7607 |
lmo1598 |
tyrS |
-15.93 |
0.065557 |
245 -- 292 |
152 -- 211 |
tyrosyl-tRNA synthetase |
|
_____________244_______________293\n_____________|_________________|\n5'-UAG...AAAAG____AU___________AUAUU...UGU-3'\n______________GAGA__GAUGAAAAUGA\n______________||||__:|||||||::|\n______________CUCU__UUACUUUUGUU\n3'-GUU...GGUUA____AC___________UAUUA...GGA-5'\n_____________|_________________|\n_____________212_______________151\n |
197 -- 203 |
155 -- 161 |
-12.3519 kcal/mol |
1.69495 kcal/mol |
0.933796 kcal/mol |
244 293@LB@ | |@LB@5'-UAG...AAAAG AU AUAUU...UGU-3'@LB@ GAGA GAUGAAAAUGA@LB@ |||| :|||||||::|@LB@ CUCU UUACUUUUGUU@LB@3'-GUU...GGUUA AC UAUUA...GGA-5'@LB@ | |@LB@ 212 151@LB@@LB@@LB@Energy -15.93 kcal/mol@LB@Hybridization Energy -12.3519 kcal/mol@LB@Unfolding Energy - mRNA 1.69495 kcal/mol@LB@Unfolding Energy - sRNA 0.933796 kcal/mol@LB@@LB@Position - mRNA 245 -- 292@LB@Position - sRNA 152 -- 211@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 155 -- 161@LB@ |
76 |
0.01998 |
0.6733 |
lmo1751 |
N/A |
-17.90 |
0.027246 |
260 -- 292 |
176 -- 211 |
Uncharacterized RNA methyltransferase lmo1751 |
|
_____________259______________293\n_____________|________________|\n5'-GAA...GGCAA____CUU_________UCCCU...CAU-3'\n______________GGGA____UGGAAGCA\n______________|:||____||:||:||\n______________CUCU____ACUUUUGU\n3'-GUU...GGUUA____ACUU________UUAUU...GGA-5'\n_____________|________________|\n_____________212______________175\n |
203 -- 209 |
155 -- 161 |
-10.7582 kcal/mol |
2.48877 kcal/mol |
0.929544 kcal/mol |
259 293@LB@ | |@LB@5'-GAA...GGCAA CUU UCCCU...CAU-3'@LB@ GGGA UGGAAGCA@LB@ |:|| ||:||:||@LB@ CUCU ACUUUUGU@LB@3'-GUU...GGUUA ACUU UUAUU...GGA-5'@LB@ | |@LB@ 212 175@LB@@LB@@LB@Energy -17.90 kcal/mol@LB@Hybridization Energy -10.7582 kcal/mol@LB@Unfolding Energy - mRNA 2.48877 kcal/mol@LB@Unfolding Energy - sRNA 0.929544 kcal/mol@LB@@LB@Position - mRNA 260 -- 292@LB@Position - sRNA 176 -- 211@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 155 -- 161@LB@ |
66 |
0.01668 |
0.6733 |
lmo0959 |
N/A |
-18.16 |
0.024105 |
185 -- 212 |
177 -- 206 |
undacaprenyl-phosphate N-acetylglucosaminyltransferase |
|
_____________184________________213\n_____________|__________________|\n5'-GAA...AAGUA_____________A____AUUUG...CAG-3'\n______________UAAUGAGAUGAGU_AAAA\n______________:||||||||||:|_||||\n______________GUUACUCUACUUA_UUUU\n3'-GUU...UGCCG_____________C____GUUUA...GGA-5'\n_____________|__________________|\n_____________207________________176\n |
169 -- 175 |
162 -- 168 |
-15.497 kcal/mol |
1.5517 kcal/mol |
0.933292 kcal/mol |
184 213@LB@ | |@LB@5'-GAA...AAGUA A AUUUG...CAG-3'@LB@ UAAUGAGAUGAGU AAAA@LB@ :||||||||||:| ||||@LB@ GUUACUCUACUUA UUUU@LB@3'-GUU...UGCCG C GUUUA...GGA-5'@LB@ | |@LB@ 207 176@LB@@LB@@LB@Energy -18.16 kcal/mol@LB@Hybridization Energy -15.497 kcal/mol@LB@Unfolding Energy - mRNA 1.5517 kcal/mol@LB@Unfolding Energy - sRNA 0.933292 kcal/mol@LB@@LB@Position - mRNA 185 -- 212@LB@Position - sRNA 177 -- 206@LB@Position Seed - mRNA 169 -- 175@LB@Position Seed - sRNA 162 -- 168@LB@ |
39 |
0.008114 |
0.5599 |
lmo0390 |
N/A |
-15.77 |
0.070471 |
151 -- 193 |
167 -- 211 |
uracil-DNA glycosylase |
|
_____________150________194\n_____________|__________|\n5'-UCG...ACUGA__________AUUAA...AUG-3'\n______________GACGGGA_GA\n______________:||||||_||\n______________UUGCCCU_CU\n3'-GUU...ACGUA_______A__CCGUA...GGA-5'\n_____________|__________|\n_____________212________166\n |
185 -- 191 |
201 -- 207 |
-12.4012 kcal/mol |
0.989391 kcal/mol |
0.374399 kcal/mol |
150 194@LB@ | |@LB@5'-UCG...ACUGA AUUAA...AUG-3'@LB@ GACGGGA GA@LB@ :|||||| ||@LB@ UUGCCCU CU@LB@3'-GUU...ACGUA A CCGUA...GGA-5'@LB@ | |@LB@ 212 166@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -12.4012 kcal/mol@LB@Unfolding Energy - mRNA 0.989391 kcal/mol@LB@Unfolding Energy - sRNA 0.374399 kcal/mol@LB@@LB@Position - mRNA 151 -- 193@LB@Position - sRNA 167 -- 211@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 201 -- 207@LB@ |
34 |
0.007076 |
0.552 |
lmo2678 |
N/A |
-19.30 |
0.013995 |
184 -- 246 |
155 -- 207 |
XRE family transcriptional regulator |
|
_____________183__________________________________________________________247\n_____________|____________________________________________________________|\n5'-GAA...AGACG____AG_____AA______A__AA______U___CUAAUUGUGGA__________U____UCAGU...AAG-3'\n______________GAGG__AUGGA__AUGAAC_GC__GCGGCU_GUG___________AGAUGAA_GA_GGCA\n______________||||__||:||__||||||_:|__:||||:_:||___________|||||||_||_::||\n______________CUCC__UAUCU__UACUUG_UG__UGCCGG_UAC___________UCUACUU_CU_UUGU\n3'-GUU...CCCUA____G______G_______A__________U_____________________A__U____UUAUU...GGA-5'\n_____________|____________________________________________________________|\n_____________208__________________________________________________________154\n |
233 -- 239 |
163 -- 169 |
-37.3867 kcal/mol |
12.1272 kcal/mol |
13.9822 kcal/mol |
183 247@LB@ | |@LB@5'-GAA...AGACG AG AA A AA U CUAAUUGUGGA U UCAGU...AAG-3'@LB@ GAGG AUGGA AUGAAC GC GCGGCU GUG AGAUGAA GA GGCA@LB@ |||| ||:|| |||||| :| :||||: :|| ||||||| || ::||@LB@ CUCC UAUCU UACUUG UG UGCCGG UAC UCUACUU CU UUGU@LB@3'-GUU...CCCUA G G A U A U UUAUU...GGA-5'@LB@ | |@LB@ 208 154@LB@@LB@@LB@Energy -19.30 kcal/mol@LB@Hybridization Energy -37.3867 kcal/mol@LB@Unfolding Energy - mRNA 12.1272 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 184 -- 246@LB@Position - sRNA 155 -- 207@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 163 -- 169@LB@ |
6 |
0.001395 |
0.4469 |
lmo2078 |
N/A |
-19.77 |
0.011149 |
188 -- 240 |
154 -- 207 |
|
|
_____________187___________________________________________________________________241\n_____________|_____________________________________________________________________|\n5'-GAU...UUUAU_____C______U__________U____UA____________AAUG____A_G________________UUCGA...AGG-3'\n______________UUUGG_GCGUCU_UGU_____GG_AUGA__UGUAGA___GAA____AUGG_C_GGUGAGGU_AAUGGAA\n______________||:||_|||:||_||:_____||_||||__::||||___|||____|:||_|_::||||:|_||||:||\n______________AAGCC_CGCGGA_ACG_____CC_UACU__GUAUCU___CUU____UGCC_G_UUACUCUA_UUACUUU\n3'-GUU...AGUAC____________U___UAUUG__C____CC______GUA___GAUG______G________C_______UGUUU...GGA-5'\n_____________|_____________________________________________________________________|\n_____________208___________________________________________________________________153\n |
200 -- 206 |
158 -- 164 |
-46.039 kcal/mol |
12.924 kcal/mol |
22.2029 kcal/mol |
187 241@LB@ | |@LB@5'-GAU...UUUAU C U U UA AAUG A G UUCGA...AGG-3'@LB@ UUUGG GCGUCU UGU GG AUGA UGUAGA GAA AUGG C GGUGAGGU AAUGGAA@LB@ ||:|| |||:|| ||: || |||| ::|||| ||| |:|| | ::||||:| ||||:||@LB@ AAGCC CGCGGA ACG CC UACU GUAUCU CUU UGCC G UUACUCUA UUACUUU@LB@3'-GUU...AGUAC U UAUUG C CC GUA GAUG G C UGUUU...GGA-5'@LB@ | |@LB@ 208 153@LB@@LB@@LB@Energy -19.77 kcal/mol@LB@Hybridization Energy -46.039 kcal/mol@LB@Unfolding Energy - mRNA 12.924 kcal/mol@LB@Unfolding Energy - sRNA 22.2029 kcal/mol@LB@@LB@Position - mRNA 188 -- 240@LB@Position - sRNA 154 -- 207@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 158 -- 164@LB@ |