70 |
0.01838 |
0.6733 |
lmo0265 |
N/A |
-16.33 |
0.055331 |
156 -- 199 |
158 -- 207 |
succinyl-diaminopimelate desuccinylase |
|
_____________155_____200\n_____________|_______|\n5'-UUU...UAGAG_______AAACA...UGU-3'\n______________AACGGGA\n______________|||||||\n______________UUGCCCU\n3'-GUU...ACGUA_______ACUCC...GGA-5'\n_____________|_______|\n_____________208_____157\n |
156 -- 162 |
201 -- 207 |
-11.1784 kcal/mol |
0.573427 kcal/mol |
0.326294 kcal/mol |
155 200@LB@ | |@LB@5'-UUU...UAGAG AAACA...UGU-3'@LB@ AACGGGA@LB@ |||||||@LB@ UUGCCCU@LB@3'-GUU...ACGUA ACUCC...GGA-5'@LB@ | |@LB@ 208 157@LB@@LB@@LB@Energy -16.33 kcal/mol@LB@Hybridization Energy -11.1784 kcal/mol@LB@Unfolding Energy - mRNA 0.573427 kcal/mol@LB@Unfolding Energy - sRNA 0.326294 kcal/mol@LB@@LB@Position - mRNA 156 -- 199@LB@Position - sRNA 158 -- 207@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 201 -- 207@LB@ |
169 |
0.04649 |
0.7403 |
lmo0268 |
N/A |
-16.22 |
0.057928 |
275 -- 284 |
195 -- 204 |
phosphoglycerate mutase |
|
_____________274________285\n_____________|__________|\n5'-ACC...AUGCA__________GAUUC...UUG-3'\n______________GGGAUGGGGC\n______________||||||:|||\n______________CCCUACUCCG\n3'-GUU...UAUUG__________UAUCU...GGA-5'\n_____________|__________|\n_____________205________194\n |
278 -- 284 |
195 -- 201 |
-19.94 kcal/mol |
1.96731 kcal/mol |
6.55531 kcal/mol |
274 285@LB@ | |@LB@5'-ACC...AUGCA GAUUC...UUG-3'@LB@ GGGAUGGGGC@LB@ ||||||:|||@LB@ CCCUACUCCG@LB@3'-GUU...UAUUG UAUCU...GGA-5'@LB@ | |@LB@ 205 194@LB@@LB@@LB@Energy -16.22 kcal/mol@LB@Hybridization Energy -19.94 kcal/mol@LB@Unfolding Energy - mRNA 1.96731 kcal/mol@LB@Unfolding Energy - sRNA 6.55531 kcal/mol@LB@@LB@Position - mRNA 275 -- 284@LB@Position - sRNA 195 -- 204@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 195 -- 201@LB@ |
15 |
0.003165 |
0.4469 |
lmo0292 |
N/A |
-21.41 |
0.004857 |
182 -- 249 |
155 -- 212 |
heat-shock protein htrA serine protease |
|
_____________181_____________________________________________________________250\n_____________|_______________________________________________________________|\n5'-GAG...GCAGA____AAGGA__________G_G_AAGAAAAGAAUUUA_____AAACAGC______________CGCCG...AAC-3'\n______________GAGG_____AGACAUGGAC_A_A______________AAUGA_______GA_GAAUGAAAGCA\n______________||||_____|||||||:||_|_|______________|||||_______||_||||||||:||\n______________CUCC_____UCUGUACUUG_U_U______________UUACU_______CU_CUUACUUUUGU\n3'-GUU...CCCUA____GUA____________A_G_GCCGG_______________________A___________UUAUU...GGA-5'\n_____________|_______________________________________________________________|\n_____________213_____________________________________________________________154\n |
243 -- 249 |
155 -- 161 |
-30.3296 kcal/mol |
4.19045 kcal/mol |
13.9822 kcal/mol |
181 250@LB@ | |@LB@5'-GAG...GCAGA AAGGA G G AAGAAAAGAAUUUA AAACAGC CGCCG...AAC-3'@LB@ GAGG AGACAUGGAC A A AAUGA GA GAAUGAAAGCA@LB@ |||| |||||||:|| | | ||||| || ||||||||:||@LB@ CUCC UCUGUACUUG U U UUACU CU CUUACUUUUGU@LB@3'-GUU...CCCUA GUA A G GCCGG A UUAUU...GGA-5'@LB@ | |@LB@ 213 154@LB@@LB@@LB@Energy -21.41 kcal/mol@LB@Hybridization Energy -30.3296 kcal/mol@LB@Unfolding Energy - mRNA 4.19045 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 182 -- 249@LB@Position - sRNA 155 -- 212@LB@Position Seed - mRNA 243 -- 249@LB@Position Seed - sRNA 155 -- 161@LB@ |
52 |
0.01176 |
0.599 |
lmo0302 |
N/A |
-19.32 |
0.013869 |
143 -- 287 |
107 -- 220 |
lmo0302 |
|
_____________142________________288\n_____________|__________________|\n5'-CGA...CAUAG_________A__U_____AAAAA...AUA-3'\n______________GAGAUGAAU_GA_GAUGA\n______________|||||||||_||_:|::|\n______________CUCUACUUA_CU_UUGUU\n3'-GUU...GGUUA____________U_____UAUUA...GGA-5'\n_____________|__________________|\n_____________221________________106\n |
189 -- 195 |
162 -- 168 |
-14.2485 kcal/mol |
1.08239 kcal/mol |
0.933796 kcal/mol |
142 288@LB@ | |@LB@5'-CGA...CAUAG A U AAAAA...AUA-3'@LB@ GAGAUGAAU GA GAUGA@LB@ ||||||||| || :|::|@LB@ CUCUACUUA CU UUGUU@LB@3'-GUU...GGUUA U UAUUA...GGA-5'@LB@ | |@LB@ 221 106@LB@@LB@@LB@Energy -19.32 kcal/mol@LB@Hybridization Energy -14.2485 kcal/mol@LB@Unfolding Energy - mRNA 1.08239 kcal/mol@LB@Unfolding Energy - sRNA 0.933796 kcal/mol@LB@@LB@Position - mRNA 143 -- 287@LB@Position - sRNA 107 -- 220@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 162 -- 168@LB@ |
19 |
0.003536 |
0.4469 |
lmo0321 |
N/A |
-22.74 |
0.002408 |
114 -- 157 |
167 -- 207 |
|
|
_____________113____________________________________________158\n_____________|______________________________________________|\n5'-AUU...UGUUA________UA____G_AC__________GGA_____U_________AUGUU...AGG-3'\n______________AGCGGGAU__GAGG_A__UAGGUA_GAA____ACGG_CUAAUGAGA\n______________|:||||||__||||_|__|||::|_|||____||||_|:|||||||\n______________UUGCCCUA__CUCC_U__AUCUGU_CUU____UGCC_GGUUACUCU\n3'-GUU...ACGUA______________G_________A___GAUG______________ACUUA...GGA-5'\n_____________|______________________________________________|\n_____________208____________________________________________166\n |
151 -- 157 |
167 -- 173 |
-39.7249 kcal/mol |
9.73371 kcal/mol |
18.0488 kcal/mol |
113 158@LB@ | |@LB@5'-AUU...UGUUA UA G AC GGA U AUGUU...AGG-3'@LB@ AGCGGGAU GAGG A UAGGUA GAA ACGG CUAAUGAGA@LB@ |:|||||| |||| | |||::| ||| |||| |:|||||||@LB@ UUGCCCUA CUCC U AUCUGU CUU UGCC GGUUACUCU@LB@3'-GUU...ACGUA G A GAUG ACUUA...GGA-5'@LB@ | |@LB@ 208 166@LB@@LB@@LB@Energy -22.74 kcal/mol@LB@Hybridization Energy -39.7249 kcal/mol@LB@Unfolding Energy - mRNA 9.73371 kcal/mol@LB@Unfolding Energy - sRNA 18.0488 kcal/mol@LB@@LB@Position - mRNA 114 -- 157@LB@Position - sRNA 167 -- 207@LB@Position Seed - mRNA 151 -- 157@LB@Position Seed - sRNA 167 -- 173@LB@ |
43 |
0.009411 |
0.5889 |
lmo0325 |
N/A |
-15.65 |
0.074138 |
261 -- 289 |
174 -- 199 |
transcriptional regulator |
|
______________261_________________________290\n______________|___________________________|\n___________5'-_______AAUACUUAAAAAA________ACGAU...UCG-3'\n______________UGCUAUU_____________GGAAGAUG\n______________|||:|||_____________||||||||\n______________ACGGUAA_____________CCUUCUAC\n3'-GUU...GAUCA_______GAUAA________________CUAUG...GGA-5'\n_____________|____________________________|\n_____________200__________________________173\n |
22 -- 28 |
97 -- 103 |
-16.3216 kcal/mol |
2.64423 kcal/mol |
5.20765 kcal/mol |
261 290@LB@ | |@LB@ 5'- AAUACUUAAAAAA ACGAU...UCG-3'@LB@ UGCUAUU GGAAGAUG@LB@ |||:||| ||||||||@LB@ ACGGUAA CCUUCUAC@LB@3'-GUU...GAUCA GAUAA CUAUG...GGA-5'@LB@ | |@LB@ 200 173@LB@@LB@@LB@Energy -15.65 kcal/mol@LB@Hybridization Energy -16.3216 kcal/mol@LB@Unfolding Energy - mRNA 2.64423 kcal/mol@LB@Unfolding Energy - sRNA 5.20765 kcal/mol@LB@@LB@Position - mRNA 261 -- 289@LB@Position - sRNA 174 -- 199@LB@Position Seed - mRNA 22 -- 28@LB@Position Seed - sRNA 97 -- 103@LB@ |
67 |
0.01689 |
0.6733 |
lmo0335 |
N/A |
-16.81 |
0.044620 |
154 -- 214 |
153 -- 220 |
lmo0335 |
|
_____________153_____________________________________________________________215\n_____________|_______________________________________________________________|\n5'-AAA...CUACC______AUA______G____A____AUAUA______G_G____________A___________AUAAA...AUA-3'\n______________GGUGCU_____AUGA_GGGG__AGG_____CAUAGA_A_GAA__GCAU_GC_GAUGAGA_GAA\n______________||:||:_____||:|_|||:__|||_____||||||_|_|||__:||:_||_:||||||_|||\n______________CCGCGG_____UAUU_CCCU__UCC_____GUAUCU_U_CUU__UGUG_CG_UUACUCU_CUU\n3'-GUU...CAAGC______AUACG____G____AC______________G_A___GA____C__G_______A___ACUUU...GGA-5'\n_____________|_______________________________________________________________|\n_____________221_____________________________________________________________152\n |
200 -- 206 |
167 -- 173 |
-43.0643 kcal/mol |
10.4394 kcal/mol |
21.4092 kcal/mol |
153 215@LB@ | |@LB@5'-AAA...CUACC AUA G A AUAUA G G A AUAAA...AUA-3'@LB@ GGUGCU AUGA GGGG AGG CAUAGA A GAA GCAU GC GAUGAGA GAA@LB@ ||:||: ||:| |||: ||| |||||| | ||| :||: || :|||||| |||@LB@ CCGCGG UAUU CCCU UCC GUAUCU U CUU UGUG CG UUACUCU CUU@LB@3'-GUU...CAAGC AUACG G AC G A GA C G A ACUUU...GGA-5'@LB@ | |@LB@ 221 152@LB@@LB@@LB@Energy -16.81 kcal/mol@LB@Hybridization Energy -43.0643 kcal/mol@LB@Unfolding Energy - mRNA 10.4394 kcal/mol@LB@Unfolding Energy - sRNA 21.4092 kcal/mol@LB@@LB@Position - mRNA 154 -- 214@LB@Position - sRNA 153 -- 220@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 167 -- 173@LB@ |
197 |
0.05638 |
0.7607 |
lmo0344 |
N/A |
-15.66 |
0.073858 |
267 -- 298 |
182 -- 211 |
short chain dehydrogenase |
|
_____________266______299\n_____________|________|\n5'-CAG...CAGCA________UGGUA...UUU-3'\n______________AGCGGGAU\n______________|:||||||\n______________UUGCCCUA\n3'-GUU...ACGUA________CUCCG...GGA-5'\n_____________|________|\n_____________212______181\n |
271 -- 277 |
200 -- 206 |
-11.8444 kcal/mol |
1.0403 kcal/mol |
0.330969 kcal/mol |
266 299@LB@ | |@LB@5'-CAG...CAGCA UGGUA...UUU-3'@LB@ AGCGGGAU@LB@ |:||||||@LB@ UUGCCCUA@LB@3'-GUU...ACGUA CUCCG...GGA-5'@LB@ | |@LB@ 212 181@LB@@LB@@LB@Energy -15.66 kcal/mol@LB@Hybridization Energy -11.8444 kcal/mol@LB@Unfolding Energy - mRNA 1.0403 kcal/mol@LB@Unfolding Energy - sRNA 0.330969 kcal/mol@LB@@LB@Position - mRNA 267 -- 298@LB@Position - sRNA 182 -- 211@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 200 -- 206@LB@ |
105 |
0.02711 |
0.6733 |
lmo0347 |
N/A |
-16.41 |
0.053410 |
62 -- 87 |
160 -- 186 |
dihydroxyacetone kinase |
|
_____________61____________________________88\n_____________|_____________________________|\n5'-AUC...GUUGG__________ACU________________UUGGU...AUU-3'\n______________GAACUACGCG___UCGAUG_GAU__AUGA\n______________|||||||:||___:|:|||_|||__||||\n______________CUUGAUGUGC___GGUUAC_CUA__UACU\n3'-GUU...CUGUA__________C________U___CU____UUUGU...GGA-5'\n_____________|_____________________________|\n_____________187___________________________159\n |
65 -- 71 |
177 -- 183 |
-23.7931 kcal/mol |
4.23572 kcal/mol |
9.57505 kcal/mol |
61 88@LB@ | |@LB@5'-AUC...GUUGG ACU UUGGU...AUU-3'@LB@ GAACUACGCG UCGAUG GAU AUGA@LB@ |||||||:|| :|:||| ||| ||||@LB@ CUUGAUGUGC GGUUAC CUA UACU@LB@3'-GUU...CUGUA C U CU UUUGU...GGA-5'@LB@ | |@LB@ 187 159@LB@@LB@@LB@Energy -16.41 kcal/mol@LB@Hybridization Energy -23.7931 kcal/mol@LB@Unfolding Energy - mRNA 4.23572 kcal/mol@LB@Unfolding Energy - sRNA 9.57505 kcal/mol@LB@@LB@Position - mRNA 62 -- 87@LB@Position - sRNA 160 -- 186@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 177 -- 183@LB@ |
120 |
0.03214 |
0.6968 |
lmo0368 |
N/A |
-17.05 |
0.040150 |
163 -- 213 |
95 -- 164 |
|
|
_____________162______________________________________________214\n_____________|________________________________________________|\n5'-UGC...AAUGA_____A_____AA_______AGGGA___G______G_______A____AUUUG...UUC-3'\n______________AAGCA___GUC__UGAUUAG_____GCC_AUUUUA_UGGAAGA_UGGG\n______________||:||___|||__|||:|||_____|||_|||:||_|||||||_|||:\n______________UUUGU___CAG__ACUGAUC_____CGG_UAAGAU_ACCUUCU_ACCU\n3'-GUU...ACAGA_____CUA____________AA_____________A____________AUGUG...GGA-5'\n_____________|________________________________________________|\n_____________165______________________________________________94\n |
202 -- 208 |
99 -- 105 |
-32.1999 kcal/mol |
10.9316 kcal/mol |
9.49359 kcal/mol |
162 214@LB@ | |@LB@5'-UGC...AAUGA A AA AGGGA G G A AUUUG...UUC-3'@LB@ AAGCA GUC UGAUUAG GCC AUUUUA UGGAAGA UGGG@LB@ ||:|| ||| |||:||| ||| |||:|| ||||||| |||:@LB@ UUUGU CAG ACUGAUC CGG UAAGAU ACCUUCU ACCU@LB@3'-GUU...ACAGA CUA AA A AUGUG...GGA-5'@LB@ | |@LB@ 165 94@LB@@LB@@LB@Energy -17.05 kcal/mol@LB@Hybridization Energy -32.1999 kcal/mol@LB@Unfolding Energy - mRNA 10.9316 kcal/mol@LB@Unfolding Energy - sRNA 9.49359 kcal/mol@LB@@LB@Position - mRNA 163 -- 213@LB@Position - sRNA 95 -- 164@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 99 -- 105@LB@ |