61 |
0.01458 |
0.6412 |
lmo2589 |
N/A |
-18.59 |
0.019740 |
180 -- 258 |
153 -- 210 |
TetR family transcriptional regulator |
|
_____________179__________259\n_____________|____________|\n5'-ACU...AACAG____________UGUUU...CUG-3'\n______________AAC_GGGUGGGG\n______________|||_||:||:||\n______________UUG_CCUACUCC\n3'-GUU...ACGUA___C________GUAUC...GGA-5'\n_____________|____________|\n_____________211__________152\n |
186 -- 192 |
197 -- 203 |
-13.3669 kcal/mol |
1.19489 kcal/mol |
3.58567 kcal/mol |
179 259@LB@ | |@LB@5'-ACU...AACAG UGUUU...CUG-3'@LB@ AAC GGGUGGGG@LB@ ||| ||:||:||@LB@ UUG CCUACUCC@LB@3'-GUU...ACGUA C GUAUC...GGA-5'@LB@ | |@LB@ 211 152@LB@@LB@@LB@Energy -18.59 kcal/mol@LB@Hybridization Energy -13.3669 kcal/mol@LB@Unfolding Energy - mRNA 1.19489 kcal/mol@LB@Unfolding Energy - sRNA 3.58567 kcal/mol@LB@@LB@Position - mRNA 180 -- 258@LB@Position - sRNA 153 -- 210@LB@Position Seed - mRNA 186 -- 192@LB@Position Seed - sRNA 197 -- 203@LB@ |
63 |
0.01551 |
0.6624 |
lmo2613 |
rplO |
-17.63 |
0.030853 |
185 -- 213 |
177 -- 203 |
50S ribosomal protein L15 |
|
_____________184______214\n_____________|________|\n5'-AAU...AUUCG________UCACU...GCG-3'\n______________UGGGAUGA\n______________:|||||||\n______________GCCCUACU\n3'-GUU...GUAUU________CCGUA...GGA-5'\n_____________|________|\n_____________204______176\n |
98 -- 104 |
198 -- 204 |
-11.9514 kcal/mol |
5.35707 kcal/mol |
0.374397 kcal/mol |
184 214@LB@ | |@LB@5'-AAU...AUUCG UCACU...GCG-3'@LB@ UGGGAUGA@LB@ :|||||||@LB@ GCCCUACU@LB@3'-GUU...GUAUU CCGUA...GGA-5'@LB@ | |@LB@ 204 176@LB@@LB@@LB@Energy -17.63 kcal/mol@LB@Hybridization Energy -11.9514 kcal/mol@LB@Unfolding Energy - mRNA 5.35707 kcal/mol@LB@Unfolding Energy - sRNA 0.374397 kcal/mol@LB@@LB@Position - mRNA 185 -- 213@LB@Position - sRNA 177 -- 203@LB@Position Seed - mRNA 98 -- 104@LB@Position Seed - sRNA 198 -- 204@LB@ |
187 |
0.05427 |
0.7607 |
lmo2654 |
fus |
-15.17 |
0.090605 |
196 -- 212 |
168 -- 184 |
elongation factor G |
|
_____________195____________213\n_____________|______________|\n5'-GAG...AUACA__________A___UUCUC...AUA-3'\n______________ACAUGGCUAG_GAG\n______________|||:|||:|:_|||\n______________UGUGCCGGUU_CUC\n3'-GUU...CUUGA__________A___UACUU...GGA-5'\n_____________|______________|\n_____________185____________167\n |
202 -- 208 |
172 -- 178 |
-17.9516 kcal/mol |
0.731619 kcal/mol |
6.23346 kcal/mol |
195 213@LB@ | |@LB@5'-GAG...AUACA A UUCUC...AUA-3'@LB@ ACAUGGCUAG GAG@LB@ |||:|||:|: |||@LB@ UGUGCCGGUU CUC@LB@3'-GUU...CUUGA A UACUU...GGA-5'@LB@ | |@LB@ 185 167@LB@@LB@@LB@Energy -15.17 kcal/mol@LB@Hybridization Energy -17.9516 kcal/mol@LB@Unfolding Energy - mRNA 0.731619 kcal/mol@LB@Unfolding Energy - sRNA 6.23346 kcal/mol@LB@@LB@Position - mRNA 196 -- 212@LB@Position - sRNA 168 -- 184@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 172 -- 178@LB@ |
137 |
0.03627 |
0.6968 |
lmo2666 |
N/A |
-15.01 |
0.096662 |
42 -- 111 |
153 -- 211 |
PTS galacticol transporter subunit IIB |
|
_____________41__________________112\n_____________|___________________|\n5'-CUC...ACUCA___CGAAA___________AGUAA...UGG-3'\n______________GAG_____GAUGAAGACGA\n______________|||_____:|||||:||:|\n______________CUC_____UUACUUUUGUU\n3'-GUU...GGUUA___UAC_____________UAUUA...GGA-5'\n_____________|___________________|\n_____________212_________________152\n |
104 -- 110 |
154 -- 160 |
-11.8615 kcal/mol |
1.60013 kcal/mol |
0.933796 kcal/mol |
41 112@LB@ | |@LB@5'-CUC...ACUCA CGAAA AGUAA...UGG-3'@LB@ GAG GAUGAAGACGA@LB@ ||| :|||||:||:|@LB@ CUC UUACUUUUGUU@LB@3'-GUU...GGUUA UAC UAUUA...GGA-5'@LB@ | |@LB@ 212 152@LB@@LB@@LB@Energy -15.01 kcal/mol@LB@Hybridization Energy -11.8615 kcal/mol@LB@Unfolding Energy - mRNA 1.60013 kcal/mol@LB@Unfolding Energy - sRNA 0.933796 kcal/mol@LB@@LB@Position - mRNA 42 -- 111@LB@Position - sRNA 153 -- 211@LB@Position Seed - mRNA 104 -- 110@LB@Position Seed - sRNA 154 -- 160@LB@ |
198 |
0.05669 |
0.7607 |
lmo2670 |
N/A |
-16.54 |
0.050282 |
118 -- 190 |
141 -- 216 |
|
|
_____________117_________________191\n_____________|___________________|\n5'-AAU...AUUUG_________UACC______UUCAA...UCU-3'\n______________GAUGAGAUG____GGGAAC\n______________:||||||||____|::|||\n______________UUACUCUAC____CUUUUG\n3'-GUU...GCCGG_________UUA_______UUUAU...GGA-5'\n_____________|___________________|\n_____________217_________________140\n |
72 -- 78 |
165 -- 171 |
-16.0384 kcal/mol |
2.83906 kcal/mol |
0.941471 kcal/mol |
117 191@LB@ | |@LB@5'-AAU...AUUUG UACC UUCAA...UCU-3'@LB@ GAUGAGAUG GGGAAC@LB@ :|||||||| |::|||@LB@ UUACUCUAC CUUUUG@LB@3'-GUU...GCCGG UUA UUUAU...GGA-5'@LB@ | |@LB@ 217 140@LB@@LB@@LB@Energy -16.54 kcal/mol@LB@Hybridization Energy -16.0384 kcal/mol@LB@Unfolding Energy - mRNA 2.83906 kcal/mol@LB@Unfolding Energy - sRNA 0.941471 kcal/mol@LB@@LB@Position - mRNA 118 -- 190@LB@Position - sRNA 141 -- 216@LB@Position Seed - mRNA 72 -- 78@LB@Position Seed - sRNA 165 -- 171@LB@ |
34 |
0.007076 |
0.552 |
lmo2678 |
N/A |
-19.30 |
0.013995 |
184 -- 246 |
155 -- 207 |
XRE family transcriptional regulator |
|
_____________183__________________________________________________________247\n_____________|____________________________________________________________|\n5'-GAA...AGACG____AG_____AA______A__AA______U___CUAAUUGUGGA__________U____UCAGU...AAG-3'\n______________GAGG__AUGGA__AUGAAC_GC__GCGGCU_GUG___________AGAUGAA_GA_GGCA\n______________||||__||:||__||||||_:|__:||||:_:||___________|||||||_||_::||\n______________CUCC__UAUCU__UACUUG_UG__UGCCGG_UAC___________UCUACUU_CU_UUGU\n3'-GUU...CCCUA____G______G_______A__________U_____________________A__U____UUAUU...GGA-5'\n_____________|____________________________________________________________|\n_____________208__________________________________________________________154\n |
233 -- 239 |
163 -- 169 |
-37.3867 kcal/mol |
12.1272 kcal/mol |
13.9822 kcal/mol |
183 247@LB@ | |@LB@5'-GAA...AGACG AG AA A AA U CUAAUUGUGGA U UCAGU...AAG-3'@LB@ GAGG AUGGA AUGAAC GC GCGGCU GUG AGAUGAA GA GGCA@LB@ |||| ||:|| |||||| :| :||||: :|| ||||||| || ::||@LB@ CUCC UAUCU UACUUG UG UGCCGG UAC UCUACUU CU UUGU@LB@3'-GUU...CCCUA G G A U A U UUAUU...GGA-5'@LB@ | |@LB@ 208 154@LB@@LB@@LB@Energy -19.30 kcal/mol@LB@Hybridization Energy -37.3867 kcal/mol@LB@Unfolding Energy - mRNA 12.1272 kcal/mol@LB@Unfolding Energy - sRNA 13.9822 kcal/mol@LB@@LB@Position - mRNA 184 -- 246@LB@Position - sRNA 155 -- 207@LB@Position Seed - mRNA 233 -- 239@LB@Position Seed - sRNA 163 -- 169@LB@ |
21 |
0.003699 |
0.4469 |
lmo2681 |
kdpB |
-18.50 |
0.020601 |
185 -- 204 |
154 -- 173 |
potassium-transporting ATPase subunit B |
|
_____________184__________________205\n_____________|____________________|\n5'-GCA...UUUCA____________________UGGAA...AUG-3'\n______________AAUGAGGUGAAUGGAAAUGA\n______________||||||:||||||:|||::|\n______________UUACUCUACUUACUUUUGUU\n3'-GUU...GCCGG____________________UAUUA...GGA-5'\n_____________|____________________|\n_____________174__________________153\n |
197 -- 203 |
155 -- 161 |
-22.9313 kcal/mol |
3.41 kcal/mol |
0.959215 kcal/mol |
184 205@LB@ | |@LB@5'-GCA...UUUCA UGGAA...AUG-3'@LB@ AAUGAGGUGAAUGGAAAUGA@LB@ ||||||:||||||:|||::|@LB@ UUACUCUACUUACUUUUGUU@LB@3'-GUU...GCCGG UAUUA...GGA-5'@LB@ | |@LB@ 174 153@LB@@LB@@LB@Energy -18.50 kcal/mol@LB@Hybridization Energy -22.9313 kcal/mol@LB@Unfolding Energy - mRNA 3.41 kcal/mol@LB@Unfolding Energy - sRNA 0.959215 kcal/mol@LB@@LB@Position - mRNA 185 -- 204@LB@Position - sRNA 154 -- 173@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 155 -- 161@LB@ |
134 |
0.0358 |
0.6968 |
lmo2682 |
kdpA |
-15.50 |
0.078936 |
69 -- 121 |
151 -- 202 |
potassium-transporting ATPase subunit A |
|
_____________68_____________________________________________122\n_____________|______________________________________________|\n5'-ACA...UUGGU___AU___UG_____AAGAG______G___________CG______GGGUG...AAA-3'\n______________AGG__UAG__GUGGA_____UACGGU_AA_GGGGUGAA__GAAAAU\n______________|||__|||__:||:|_____:||||:_||_|:|:||||__|||||:\n______________UCC__AUC__UACUU_____GUGCCG_UU_CUCUACUU__CUUUUG\n3'-GUU...CCUAC___GU___UG_____GAU________G__A________A_______UUUAU...GGA-5'\n_____________|______________________________________________|\n_____________203____________________________________________150\n |
102 -- 108 |
163 -- 169 |
-34.0107 kcal/mol |
9.08348 kcal/mol |
13.9626 kcal/mol |
68 122@LB@ | |@LB@5'-ACA...UUGGU AU UG AAGAG G CG GGGUG...AAA-3'@LB@ AGG UAG GUGGA UACGGU AA GGGGUGAA GAAAAU@LB@ ||| ||| :||:| :||||: || |:|:|||| |||||:@LB@ UCC AUC UACUU GUGCCG UU CUCUACUU CUUUUG@LB@3'-GUU...CCUAC GU UG GAU G A A UUUAU...GGA-5'@LB@ | |@LB@ 203 150@LB@@LB@@LB@Energy -15.50 kcal/mol@LB@Hybridization Energy -34.0107 kcal/mol@LB@Unfolding Energy - mRNA 9.08348 kcal/mol@LB@Unfolding Energy - sRNA 13.9626 kcal/mol@LB@@LB@Position - mRNA 69 -- 121@LB@Position - sRNA 151 -- 202@LB@Position Seed - mRNA 102 -- 108@LB@Position Seed - sRNA 163 -- 169@LB@ |
46 |
0.01036 |
0.599 |
lmo2695 |
N/A |
-19.87 |
0.010617 |
150 -- 211 |
156 -- 209 |
dihydroxyacetone kinase subunit DhaK |
|
_____________149_________________________________________________________________212\n_____________|___________________________________________________________________|\n5'-UUA...UUCUA____A____AAU_____________________UAUAAAGGA____UUU__UC______________UCUUA...CUC-3'\n______________GUAA_GGGA___UGAGGUA_AGA___GGACUAU_________GGUU___UG__AGAUGAA_GAAGAU\n______________:|||_||||___|||||:|_|||___|:||||:_________||::___||__|||||||_|||:|:\n______________UAUU_CCCU___ACUCCGU_UCU___CUUGAUG_________CCGG___AC__UCUACUU_CUUUUG\n3'-GUU...AUACG____G______________A___GUA_______UG___________UU____________A______UUUAU...GGA-5'\n_____________|___________________________________________________________________|\n_____________210_________________________________________________________________155\n |
199 -- 205 |
163 -- 169 |
-36.4151 kcal/mol |
9.16424 kcal/mol |
18.7057 kcal/mol |
149 212@LB@ | |@LB@5'-UUA...UUCUA A AAU UAUAAAGGA UUU UC UCUUA...CUC-3'@LB@ GUAA GGGA UGAGGUA AGA GGACUAU GGUU UG AGAUGAA GAAGAU@LB@ :||| |||| |||||:| ||| |:||||: ||:: || ||||||| |||:|:@LB@ UAUU CCCU ACUCCGU UCU CUUGAUG CCGG AC UCUACUU CUUUUG@LB@3'-GUU...AUACG G A GUA UG UU A UUUAU...GGA-5'@LB@ | |@LB@ 210 155@LB@@LB@@LB@Energy -19.87 kcal/mol@LB@Hybridization Energy -36.4151 kcal/mol@LB@Unfolding Energy - mRNA 9.16424 kcal/mol@LB@Unfolding Energy - sRNA 18.7057 kcal/mol@LB@@LB@Position - mRNA 150 -- 211@LB@Position - sRNA 156 -- 209@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 163 -- 169@LB@ |
143 |
0.03726 |
0.6968 |
lmo2701 |
N/A |
-17.97 |
0.026314 |
78 -- 126 |
156 -- 198 |
|
|
_____________77_________________________________________________127\n_____________|__________________________________________________|\n5'-GAA...CCUUC_______AAAGUA___A____AGC________UUCCA_____________UUAGA...UCA-3'\n______________AGGCAUA______ACG_GAAU___GCAUGGCC______GUGGGUGGAGAC\n______________|||||||______||:_|||:___:||:||||______:||::||:|:||\n______________UCCGUAU______UGU_CUUG___UGUGCCGG______UACUUACUUUUG\n3'-GUU...CCUAC_______C________A____A__________UUACUC____________UUUAU...GGA-5'\n_____________|__________________________________________________|\n_____________199________________________________________________155\n |
120 -- 126 |
156 -- 162 |
-37.6493 kcal/mol |
12.7788 kcal/mol |
13.9626 kcal/mol |
77 127@LB@ | |@LB@5'-GAA...CCUUC AAAGUA A AGC UUCCA UUAGA...UCA-3'@LB@ AGGCAUA ACG GAAU GCAUGGCC GUGGGUGGAGAC@LB@ ||||||| ||: |||: :||:|||| :||::||:|:||@LB@ UCCGUAU UGU CUUG UGUGCCGG UACUUACUUUUG@LB@3'-GUU...CCUAC C A A UUACUC UUUAU...GGA-5'@LB@ | |@LB@ 199 155@LB@@LB@@LB@Energy -17.97 kcal/mol@LB@Hybridization Energy -37.6493 kcal/mol@LB@Unfolding Energy - mRNA 12.7788 kcal/mol@LB@Unfolding Energy - sRNA 13.9626 kcal/mol@LB@@LB@Position - mRNA 78 -- 126@LB@Position - sRNA 156 -- 198@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 156 -- 162@LB@ |