149 |
0.0387 |
0.6968 |
lmo1809 |
plsX |
-16.53 |
0.050633 |
188 -- 233 |
156 -- 203 |
glycerol-3-phosphate acyltransferase PlsX |
|
_____________187________________234\n_____________|__________________|\n5'-ACA...CUGUA____C_____________CACGC...UUC-3'\n______________GAUG_GAUGGGUGGAGAU\n______________:|||_||||::||:|:|:\n______________UUAC_CUACUUACUUUUG\n3'-GUU...GCCGG____U_____________UUUAU...GGA-5'\n_____________|__________________|\n_____________204________________155\n |
227 -- 233 |
156 -- 162 |
-17.4325 kcal/mol |
7.3364 kcal/mol |
0.941471 kcal/mol |
187 234@LB@ | |@LB@5'-ACA...CUGUA C CACGC...UUC-3'@LB@ GAUG GAUGGGUGGAGAU@LB@ :||| ||||::||:|:|:@LB@ UUAC CUACUUACUUUUG@LB@3'-GUU...GCCGG U UUUAU...GGA-5'@LB@ | |@LB@ 204 155@LB@@LB@@LB@Energy -16.53 kcal/mol@LB@Hybridization Energy -17.4325 kcal/mol@LB@Unfolding Energy - mRNA 7.3364 kcal/mol@LB@Unfolding Energy - sRNA 0.941471 kcal/mol@LB@@LB@Position - mRNA 188 -- 233@LB@Position - sRNA 156 -- 203@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 156 -- 162@LB@ |
123 |
0.03258 |
0.6968 |
lmo1821 |
N/A |
-14.83 |
0.104144 |
189 -- 278 |
153 -- 220 |
phosphoprotein phosphatase |
|
_____________188_________279\n_____________|___________|\n5'-AGA...AUCAU___________CGGCG...UUG-3'\n______________AAUGAAGACAA\n______________||||||:||||\n______________UUACUUUUGUU\n3'-GUU...UCUAC___________UAUUA...GGA-5'\n_____________|___________|\n_____________221_________152\n |
250 -- 256 |
154 -- 160 |
-9.76744 kcal/mol |
1.01794 kcal/mol |
0.610258 kcal/mol |
188 279@LB@ | |@LB@5'-AGA...AUCAU CGGCG...UUG-3'@LB@ AAUGAAGACAA@LB@ ||||||:||||@LB@ UUACUUUUGUU@LB@3'-GUU...UCUAC UAUUA...GGA-5'@LB@ | |@LB@ 221 152@LB@@LB@@LB@Energy -14.83 kcal/mol@LB@Hybridization Energy -9.76744 kcal/mol@LB@Unfolding Energy - mRNA 1.01794 kcal/mol@LB@Unfolding Energy - sRNA 0.610258 kcal/mol@LB@@LB@Position - mRNA 189 -- 278@LB@Position - sRNA 153 -- 220@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 154 -- 160@LB@ |
31 |
0.00657 |
0.5515 |
lmo1828 |
N/A |
-18.66 |
0.019040 |
211 -- 279 |
154 -- 211 |
|
|
_____________210__________280\n_____________|____________|\n5'-AGU...GAAAA____________UUGGG...AAU-3'\n______________GCAUGACGGGAU\n______________||||:|||||||\n______________CGUAUUGCCCUA\n3'-GUU...GGAUA____________CUCCG...GGA-5'\n_____________|____________|\n_____________212__________153\n |
216 -- 222 |
200 -- 206 |
-19.8213 kcal/mol |
2.93239 kcal/mol |
6.43166 kcal/mol |
210 280@LB@ | |@LB@5'-AGU...GAAAA UUGGG...AAU-3'@LB@ GCAUGACGGGAU@LB@ ||||:|||||||@LB@ CGUAUUGCCCUA@LB@3'-GUU...GGAUA CUCCG...GGA-5'@LB@ | |@LB@ 212 153@LB@@LB@@LB@Energy -18.66 kcal/mol@LB@Hybridization Energy -19.8213 kcal/mol@LB@Unfolding Energy - mRNA 2.93239 kcal/mol@LB@Unfolding Energy - sRNA 6.43166 kcal/mol@LB@@LB@Position - mRNA 211 -- 279@LB@Position - sRNA 154 -- 211@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 200 -- 206@LB@ |
5 |
0.001245 |
0.4469 |
lmo1835 |
carB |
-22.95 |
0.002153 |
176 -- 228 |
154 -- 207 |
carbamoyl-phosphate synthetase |
|
_____________175____________________________________________________________229\n_____________|______________________________________________________________|\n5'-AAA...UGGAA___AUG_______AA_______________________C____AC_C__C__UAUA______AUUCU...CUU-3'\n______________AUG___AAUGGGA__GAGG___AGG_GUGAACUACAUG_CUAA__G_GA_GA____AAAACA\n______________|||___||:||||__||||___||:_:|||||||||:|_|:||__|_||_||____||||||\n______________UAC___UUGCCCU__CUCC___UCU_UACUUGAUGUGC_GGUU__C_CU_CU____UUUUGU\n3'-GUU...GCGGA___GUA_______A_____GUA___G____________C____A__U__A__UAC_______UUAUU...GGA-5'\n_____________|______________________________________________________________|\n_____________208____________________________________________________________153\n |
194 -- 200 |
180 -- 186 |
-39.6119 kcal/mol |
8.25276 kcal/mol |
19.5968 kcal/mol |
175 229@LB@ | |@LB@5'-AAA...UGGAA AUG AA C AC C C UAUA AUUCU...CUU-3'@LB@ AUG AAUGGGA GAGG AGG GUGAACUACAUG CUAA G GA GA AAAACA@LB@ ||| ||:|||| |||| ||: :|||||||||:| |:|| | || || ||||||@LB@ UAC UUGCCCU CUCC UCU UACUUGAUGUGC GGUU C CU CU UUUUGU@LB@3'-GUU...GCGGA GUA A GUA G C A U A UAC UUAUU...GGA-5'@LB@ | |@LB@ 208 153@LB@@LB@@LB@Energy -22.95 kcal/mol@LB@Hybridization Energy -39.6119 kcal/mol@LB@Unfolding Energy - mRNA 8.25276 kcal/mol@LB@Unfolding Energy - sRNA 19.5968 kcal/mol@LB@@LB@Position - mRNA 176 -- 228@LB@Position - sRNA 154 -- 207@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 180 -- 186@LB@ |
168 |
0.04649 |
0.7403 |
lmo1875 |
N/A |
-18.37 |
0.021889 |
174 -- 204 |
150 -- 181 |
ABC transporter ATP-binding protein |
|
_____________173_______________205\n_____________|_________________|\n5'-ACA...AACAG__A______________AUGAA...GUU-3'\n______________GA_AUGGAUGGGAAUAA\n______________||_|||:|||::||:||\n______________CU_UACUUACUUUUGUU\n3'-GUU...GGUUA__C______________UAUUA...GGA-5'\n_____________|_________________|\n_____________182_______________149\n |
193 -- 199 |
155 -- 161 |
-14.111 kcal/mol |
2.1341 kcal/mol |
0.933796 kcal/mol |
173 205@LB@ | |@LB@5'-ACA...AACAG A AUGAA...GUU-3'@LB@ GA AUGGAUGGGAAUAA@LB@ || |||:|||::||:||@LB@ CU UACUUACUUUUGUU@LB@3'-GUU...GGUUA C UAUUA...GGA-5'@LB@ | |@LB@ 182 149@LB@@LB@@LB@Energy -18.37 kcal/mol@LB@Hybridization Energy -14.111 kcal/mol@LB@Unfolding Energy - mRNA 2.1341 kcal/mol@LB@Unfolding Energy - sRNA 0.933796 kcal/mol@LB@@LB@Position - mRNA 174 -- 204@LB@Position - sRNA 150 -- 181@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 155 -- 161@LB@ |
1 |
1.731e-05 |
0.04657 |
lmo1883 |
N/A |
-26.54 |
0.000269 |
199 -- 265 |
114 -- 169 |
chitinase |
|
_____________198_________________________________________________________________266\n_____________|___________________________________________________________________|\n5'-GCG...AAAGU________G_________________GG___UU_____UU__UUUUAGUU____CGG______GG__AUUUG...ACG-3'\n______________AGAUGAAU_GAAAACAAGUAAUGGUU__UGG__UGUCU__AC________GGUG___GACUGG__GC\n______________||||||||_||||||||:|||||:||__|||__|||||__||________|:||___||||:|__||\n______________UCUACUUA_CUUUUGUUUAUUACUAA__ACC__ACAGA__UG________CUAC___CUGAUC__CG\n3'-GUU...GUUAC__________________________A___________UU__U___________AGA______AA__GUAAG...GGA-5'\n_____________|___________________________________________________________________|\n_____________170_________________________________________________________________113\n |
210 -- 216 |
153 -- 159 |
-51.3221 kcal/mol |
15.9506 kcal/mol |
18.5045 kcal/mol |
198 266@LB@ | |@LB@5'-GCG...AAAGU G GG UU UU UUUUAGUU CGG GG AUUUG...ACG-3'@LB@ AGAUGAAU GAAAACAAGUAAUGGUU UGG UGUCU AC GGUG GACUGG GC@LB@ |||||||| ||||||||:|||||:|| ||| ||||| || |:|| ||||:| ||@LB@ UCUACUUA CUUUUGUUUAUUACUAA ACC ACAGA UG CUAC CUGAUC CG@LB@3'-GUU...GUUAC A UU U AGA AA GUAAG...GGA-5'@LB@ | |@LB@ 170 113@LB@@LB@@LB@Energy -26.54 kcal/mol@LB@Hybridization Energy -51.3221 kcal/mol@LB@Unfolding Energy - mRNA 15.9506 kcal/mol@LB@Unfolding Energy - sRNA 18.5045 kcal/mol@LB@@LB@Position - mRNA 199 -- 265@LB@Position - sRNA 114 -- 169@LB@Position Seed - mRNA 210 -- 216@LB@Position Seed - sRNA 153 -- 159@LB@ |
177 |
0.05015 |
0.7607 |
lmo1905 |
cca |
-16.43 |
0.052746 |
154 -- 208 |
160 -- 211 |
tRNA CCA-pyrophosphorylase |
|
_____________153_______________209\n_____________|_________________|\n5'-UUA...AGGAG______CA_________CGUUU...UGC-3'\n______________CGAUGA__GAUGAAUGA\n______________|:||||__|||||||||\n______________GUUACU__CUACUUACU\n3'-GUU...UGCCG_________________UUUGU...GGA-5'\n_____________|_________________|\n_____________212_______________159\n |
202 -- 208 |
160 -- 166 |
-15.3935 kcal/mol |
2.32419 kcal/mol |
0.846187 kcal/mol |
153 209@LB@ | |@LB@5'-UUA...AGGAG CA CGUUU...UGC-3'@LB@ CGAUGA GAUGAAUGA@LB@ |:|||| |||||||||@LB@ GUUACU CUACUUACU@LB@3'-GUU...UGCCG UUUGU...GGA-5'@LB@ | |@LB@ 212 159@LB@@LB@@LB@Energy -16.43 kcal/mol@LB@Hybridization Energy -15.3935 kcal/mol@LB@Unfolding Energy - mRNA 2.32419 kcal/mol@LB@Unfolding Energy - sRNA 0.846187 kcal/mol@LB@@LB@Position - mRNA 154 -- 208@LB@Position - sRNA 160 -- 211@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 160 -- 166@LB@ |
33 |
0.006763 |
0.5515 |
lmo1941 |
N/A |
-21.42 |
0.004845 |
223 -- 286 |
154 -- 207 |
|
|
_____________222___________________________________________________________________287\n_____________|_____________________________________________________________________|\n5'-UAG...AGAAA_______AUACGAAGAACC___UGAUUAU________UU___AA_________________UC______UGAAC...UGU-3'\n______________AACGGGA____________GGC_______GACAUGAG__CUG___GGCCA___AGAUGAAU___AACAA\n______________|||||||____________|||_______|||||||:__||:___|||||___||||||||___|||||\n______________UUGCCCU____________CCG_______CUGUACUU__GAU___CCGGU___UCUACUUA___UUGUU\n3'-GUU...ACGUA_______ACU____________UAU_________________GUG_____UAC________CUU_____UAUUA...GGA-5'\n_____________|_____________________________________________________________________|\n_____________208___________________________________________________________________153\n |
273 -- 279 |
162 -- 168 |
-39.5283 kcal/mol |
10.6608 kcal/mol |
18.6655 kcal/mol |
222 287@LB@ | |@LB@5'-UAG...AGAAA AUACGAAGAACC UGAUUAU UU AA UC UGAAC...UGU-3'@LB@ AACGGGA GGC GACAUGAG CUG GGCCA AGAUGAAU AACAA@LB@ ||||||| ||| |||||||: ||: ||||| |||||||| |||||@LB@ UUGCCCU CCG CUGUACUU GAU CCGGU UCUACUUA UUGUU@LB@3'-GUU...ACGUA ACU UAU GUG UAC CUU UAUUA...GGA-5'@LB@ | |@LB@ 208 153@LB@@LB@@LB@Energy -21.42 kcal/mol@LB@Hybridization Energy -39.5283 kcal/mol@LB@Unfolding Energy - mRNA 10.6608 kcal/mol@LB@Unfolding Energy - sRNA 18.6655 kcal/mol@LB@@LB@Position - mRNA 223 -- 286@LB@Position - sRNA 154 -- 207@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 162 -- 168@LB@ |
92 |
0.02404 |
0.6733 |
lmo1947 |
resE |
-16.63 |
0.048416 |
181 -- 212 |
141 -- 170 |
two-component sensor histidine kinas |
|
_____________180_________________213\n_____________|___________________|\n5'-AAG...ACCGA_______AUA_________UUGGA...UUU-3'\n______________GGUGAGA___GAUGAAGAU\n______________::|||||___:|||||:|:\n______________UUACUCU___UUACUUUUG\n3'-GUU...GCCGG_______AC__________UUUAU...GGA-5'\n_____________|___________________|\n_____________171_________________140\n |
202 -- 208 |
156 -- 162 |
-13.4823 kcal/mol |
2.25638 kcal/mol |
0.941471 kcal/mol |
180 213@LB@ | |@LB@5'-AAG...ACCGA AUA UUGGA...UUU-3'@LB@ GGUGAGA GAUGAAGAU@LB@ ::||||| :|||||:|:@LB@ UUACUCU UUACUUUUG@LB@3'-GUU...GCCGG AC UUUAU...GGA-5'@LB@ | |@LB@ 171 140@LB@@LB@@LB@Energy -16.63 kcal/mol@LB@Hybridization Energy -13.4823 kcal/mol@LB@Unfolding Energy - mRNA 2.25638 kcal/mol@LB@Unfolding Energy - sRNA 0.941471 kcal/mol@LB@@LB@Position - mRNA 181 -- 212@LB@Position - sRNA 141 -- 170@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 156 -- 162@LB@ |
12 |
0.002933 |
0.4469 |
lmo1952 |
lysA |
-19.68 |
0.011630 |
182 -- 245 |
154 -- 213 |
diaminopimelate decarboxylase |
|
_____________181___________________________________________________________246\n_____________|_____________________________________________________________|\n5'-UUG...CUAUA_____AAGG______U__________________A______UG___ACA_______U____GCAGA...CGC-3'\n______________AUGUA____UGGGAU__GGCGU_GACGU___UUG_ACGGCU___GA___AUGAAUG_AAAU\n______________|||:|____:|||||__|||:|_|||:|___:|:_|||||:___||___|||||||_|||:\n______________UACGU____GCCCUA__CCGUA_CUGUA___GAU_UGCCGG___CU___UACUUAC_UUUG\n3'-GUU...GCGGA_____AUU_______CU_____U_____CUU___G______UUA__C_________U____UUUAU...GGA-5'\n_____________|_____________________________________________________________|\n_____________214___________________________________________________________153\n |
225 -- 231 |
161 -- 167 |
-39.877 kcal/mol |
10.395 kcal/mol |
19.5834 kcal/mol |
181 246@LB@ | |@LB@5'-UUG...CUAUA AAGG U A UG ACA U GCAGA...CGC-3'@LB@ AUGUA UGGGAU GGCGU GACGU UUG ACGGCU GA AUGAAUG AAAU@LB@ |||:| :||||| |||:| |||:| :|: |||||: || ||||||| |||:@LB@ UACGU GCCCUA CCGUA CUGUA GAU UGCCGG CU UACUUAC UUUG@LB@3'-GUU...GCGGA AUU CU U CUU G UUA C U UUUAU...GGA-5'@LB@ | |@LB@ 214 153@LB@@LB@@LB@Energy -19.68 kcal/mol@LB@Hybridization Energy -39.877 kcal/mol@LB@Unfolding Energy - mRNA 10.395 kcal/mol@LB@Unfolding Energy - sRNA 19.5834 kcal/mol@LB@@LB@Position - mRNA 182 -- 245@LB@Position - sRNA 154 -- 213@LB@Position Seed - mRNA 225 -- 231@LB@Position Seed - sRNA 161 -- 167@LB@ |