17 |
0.0006839 |
0.1243 |
b1247 |
oppF |
-10.96 |
0.191014 |
264 -- 288 |
1 -- 22 |
oligopeptide ABC transporter ATPase |
|
_____________263________________________289\n_____________|__________________________|\n5'-GCG...ACUUU__A________U____AAAC______UCUGG...CGC-3'\n______________GA_AUCAAAGA__GGC____AGUGGU\n______________||_||||||||__:||____|||||:\n______________CU_UAGUUUCU__UCG____UCACCG\n3'-UUU...UACCC__G________UU_____________-5'\n_____________|_________________________|\n_____________23________________________1\n |
268 -- 274 |
12 -- 18 |
-19.2479 kcal/mol |
6.74487 kcal/mol |
1.54023 kcal/mol |
263 289@LB@ | |@LB@5'-GCG...ACUUU A U AAAC UCUGG...CGC-3'@LB@ GA AUCAAAGA GGC AGUGGU@LB@ || |||||||| :|| |||||:@LB@ CU UAGUUUCU UCG UCACCG@LB@3'-UUU...UACCC G UU -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -10.96 kcal/mol@LB@Hybridization Energy -19.2479 kcal/mol@LB@Unfolding Energy - mRNA 6.74487 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 264 -- 288@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 12 -- 18@LB@ |
18 |
0.0007186 |
0.1243 |
b3657 |
yicJ |
-19.60 |
0.001218 |
184 -- 200 |
5 -- 21 |
putative transporter |
|
_____________183_______________201\n_____________|_________________|\n5'-CAG...CUAUA_________________AUGAA...UGU-3'\n______________GCAUCAAGGAAAAGCAG\n______________:||||||:|||||||||\n______________UGUAGUUUCUUUUCGUC\n3'-UUU...ACCCC_________________ACCG-5'\n_____________|_________________|\n_____________22________________4\n |
194 -- 200 |
5 -- 11 |
-25.6417 kcal/mol |
4.53845 kcal/mol |
1.5073 kcal/mol |
183 201@LB@ | |@LB@5'-CAG...CUAUA AUGAA...UGU-3'@LB@ GCAUCAAGGAAAAGCAG@LB@ :||||||:|||||||||@LB@ UGUAGUUUCUUUUCGUC@LB@3'-UUU...ACCCC ACCG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -19.60 kcal/mol@LB@Hybridization Energy -25.6417 kcal/mol@LB@Unfolding Energy - mRNA 4.53845 kcal/mol@LB@Unfolding Energy - sRNA 1.5073 kcal/mol@LB@@LB@Position - mRNA 184 -- 200@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
20 |
0.0007622 |
0.1243 |
b1507 |
hipA |
-19.17 |
0.001718 |
1 -- 29 |
1 -- 31 |
inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
|
______________1________________________________30\n______________|________________________________|\n___________5'-________CU___________C___________GAAAA...UAG-3'\n______________CAAAAUGG__GGACG_CAGAG__GAGC__UGGC\n______________||||||||__||||:_||:||__:|||__||||\n______________GUUUUACC__CCUGU_GUUUC__UUCG__ACCG\n3'-UUU...GAGGU_______________A_____UU____UC____-5'\n_____________|________________________________|\n_____________32_______________________________1\n |
2 -- 8 |
24 -- 30 |
-30.0086 kcal/mol |
8.29611 kcal/mol |
2.53929 kcal/mol |
1 30@LB@ | |@LB@ 5'- CU C GAAAA...UAG-3'@LB@ CAAAAUGG GGACG CAGAG GAGC UGGC@LB@ |||||||| ||||: ||:|| :||| ||||@LB@ GUUUUACC CCUGU GUUUC UUCG ACCG@LB@3'-UUU...GAGGU A UU UC -5'@LB@ | |@LB@ 32 1@LB@@LB@@LB@Energy -19.17 kcal/mol@LB@Hybridization Energy -30.0086 kcal/mol@LB@Unfolding Energy - mRNA 8.29611 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 1 -- 29@LB@Position - sRNA 1 -- 31@LB@Position Seed - mRNA 2 -- 8@LB@Position Seed - sRNA 24 -- 30@LB@ |
21 |
0.0007937 |
0.1243 |
b3055 |
ygiM |
-17.78 |
0.004866 |
75 -- 99 |
1 -- 23 |
SH3 domain protein |
|
_____________74________________________100\n_____________|_________________________|\n5'-GGC...UUGAC______A____UUU___________AAGAC...AUA-3'\n______________GGGCGU_AAAG___GAAGCAGUGGC\n______________||:|:|_||||___:||||||||||\n______________CCUGUA_UUUC___UUUCGUCACCG\n3'-UUU...UUACC______G____U_____________-5'\n_____________|________________________|\n_____________24_______________________1\n |
93 -- 99 |
1 -- 7 |
-29.8569 kcal/mol |
10.4968 kcal/mol |
1.57928 kcal/mol |
74 100@LB@ | |@LB@5'-GGC...UUGAC A UUU AAGAC...AUA-3'@LB@ GGGCGU AAAG GAAGCAGUGGC@LB@ ||:|:| |||| :||||||||||@LB@ CCUGUA UUUC UUUCGUCACCG@LB@3'-UUU...UUACC G U -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -17.78 kcal/mol@LB@Hybridization Energy -29.8569 kcal/mol@LB@Unfolding Energy - mRNA 10.4968 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 75 -- 99@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 93 -- 99@LB@Position Seed - sRNA 1 -- 7@LB@ |
22 |
0.0008145 |
0.1243 |
b3574 |
yiaJ |
-21.10 |
0.000313 |
196 -- 241 |
1 -- 32 |
transcriptional repressor for the yiaKLMNO-lyxK-sgbHUE operon |
|
_____________195____________________________________________242\n_____________|______________________________________________|\n5'-CCC...ACGCG____________A_GAAGUGAUGGGAAAA________CG__A____GCAGG...UUG-3'\n______________ACAAAAUGGGGA_A_______________AAAGAGAA__AG_UGGC\n______________||||||||||||_|_______________|||||:||__||_||||\n______________UGUUUUACCCCU_U_______________UUUCUUUU__UC_ACCG\n3'-UUU...CGAGG____________G_AG_____________________CG_______-5'\n_____________|_____________________________________________|\n_____________33____________________________________________1\n |
226 -- 232 |
9 -- 15 |
-30.0936 kcal/mol |
6.45407 kcal/mol |
2.53929 kcal/mol |
195 242@LB@ | |@LB@5'-CCC...ACGCG A GAAGUGAUGGGAAAA CG A GCAGG...UUG-3'@LB@ ACAAAAUGGGGA A AAAGAGAA AG UGGC@LB@ |||||||||||| | |||||:|| || ||||@LB@ UGUUUUACCCCU U UUUCUUUU UC ACCG@LB@3'-UUU...CGAGG G AG CG -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -21.10 kcal/mol@LB@Hybridization Energy -30.0936 kcal/mol@LB@Unfolding Energy - mRNA 6.45407 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 196 -- 241@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 226 -- 232@LB@Position Seed - sRNA 9 -- 15@LB@ |
23 |
0.0008148 |
0.1243 |
b2573 |
rpoE |
-12.22 |
0.112158 |
248 -- 284 |
1 -- 24 |
RNA polymerase sigma E factor |
|
_____________247___________________________________285\n_____________|_____________________________________|\n5'-ACA...CAGAA____G______AAGCCUUUAACUUACU_______C__UAUCA...UGG-3'\n______________GGGA_AUCAGA________________GGUAGUG_GC\n______________||||_||||:|________________:|:||||_||\n______________CCCU_UAGUUU________________UCGUCAC_CG\n3'-UUU...UUUAC____G______CUUU______________________-5'\n_____________|____________________________________|\n_____________25___________________________________1\n |
275 -- 281 |
3 -- 9 |
-22.4239 kcal/mol |
7.75978 kcal/mol |
2.44282 kcal/mol |
247 285@LB@ | |@LB@5'-ACA...CAGAA G AAGCCUUUAACUUACU C UAUCA...UGG-3'@LB@ GGGA AUCAGA GGUAGUG GC@LB@ |||| ||||:| :|:|||| ||@LB@ CCCU UAGUUU UCGUCAC CG@LB@3'-UUU...UUUAC G CUUU -5'@LB@ | |@LB@ 25 1@LB@@LB@@LB@Energy -12.22 kcal/mol@LB@Hybridization Energy -22.4239 kcal/mol@LB@Unfolding Energy - mRNA 7.75978 kcal/mol@LB@Unfolding Energy - sRNA 2.44282 kcal/mol@LB@@LB@Position - mRNA 248 -- 284@LB@Position - sRNA 1 -- 24@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 3 -- 9@LB@ |
25 |
0.0009834 |
0.1361 |
b3733 |
atpG |
-13.27 |
0.068654 |
183 -- 205 |
1 -- 22 |
F1 sector of membrane-bound ATP synthase gamma subunit |
|
_____________182_____________________206\n_____________|_______________________|\n5'-GGC...CGCAA________________UCA____CGGCG...GUA-3'\n______________GGCAUUGAGGAGAAGC___UGGC\n______________|:|||::|:||:||||___||||\n______________CUGUAGUUUCUUUUCG___ACCG\n3'-UUU...UACCC________________UC_____-5'\n_____________|______________________|\n_____________23_____________________1\n |
192 -- 198 |
7 -- 13 |
-25.5897 kcal/mol |
10.7799 kcal/mol |
1.54023 kcal/mol |
182 206@LB@ | |@LB@5'-GGC...CGCAA UCA CGGCG...GUA-3'@LB@ GGCAUUGAGGAGAAGC UGGC@LB@ |:|||::|:||:|||| ||||@LB@ CUGUAGUUUCUUUUCG ACCG@LB@3'-UUU...UACCC UC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -13.27 kcal/mol@LB@Hybridization Energy -25.5897 kcal/mol@LB@Unfolding Energy - mRNA 10.7799 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 7 -- 13@LB@ |
26 |
0.001009 |
0.1361 |
b3731 |
atpC |
-14.21 |
0.042680 |
144 -- 160 |
2 -- 20 |
F1 sector of membrane-bound ATP synthase epsilon subunit |
|
_____________143_________________161\n_____________|___________________|\n5'-UCC...GGUUC______________U____AAAAA...UGG-3'\n______________CAUCGAAGA__AGC_GUGG\n______________||||:||||__|||_||||\n______________GUAGUUUCU__UCG_CACC\n3'-UUU...CCCCU_________UU___U____G-5'\n_____________|___________________|\n_____________21__________________1\n |
146 -- 152 |
12 -- 18 |
-19.7705 kcal/mol |
4.1055 kcal/mol |
1.45839 kcal/mol |
143 161@LB@ | |@LB@5'-UCC...GGUUC U AAAAA...UGG-3'@LB@ CAUCGAAGA AGC GUGG@LB@ ||||:|||| ||| ||||@LB@ GUAGUUUCU UCG CACC@LB@3'-UUU...CCCCU UU U G-5'@LB@ | |@LB@ 21 1@LB@@LB@@LB@Energy -14.21 kcal/mol@LB@Hybridization Energy -19.7705 kcal/mol@LB@Unfolding Energy - mRNA 4.1055 kcal/mol@LB@Unfolding Energy - sRNA 1.45839 kcal/mol@LB@@LB@Position - mRNA 144 -- 160@LB@Position - sRNA 2 -- 20@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 12 -- 18@LB@ |
27 |
0.001238 |
0.1512 |
b4045 |
yjbJ |
-9.99 |
0.275707 |
259 -- 267 |
19 -- 28 |
stress-induced protein UPF0337 family |
|
_____________258________268\n_____________|__________|\n5'-CGU...AGAGC__________AACUG...AAG-3'\n______________AAUGGGG_CA\n______________|||||||_||\n______________UUACCCC_GU\n3'-UUU...GUGUU_______U__AGUUU...CCG-5'\n_____________|__________|\n_____________29_________18\n |
259 -- 265 |
22 -- 28 |
-11.8839 kcal/mol |
1.24365 kcal/mol |
0.649553 kcal/mol |
258 268@LB@ | |@LB@5'-CGU...AGAGC AACUG...AAG-3'@LB@ AAUGGGG CA@LB@ ||||||| ||@LB@ UUACCCC GU@LB@3'-UUU...GUGUU U AGUUU...CCG-5'@LB@ | |@LB@ 29 18@LB@@LB@@LB@Energy -9.99 kcal/mol@LB@Hybridization Energy -11.8839 kcal/mol@LB@Unfolding Energy - mRNA 1.24365 kcal/mol@LB@Unfolding Energy - sRNA 0.649553 kcal/mol@LB@@LB@Position - mRNA 259 -- 267@LB@Position - sRNA 19 -- 28@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 22 -- 28@LB@ |
28 |
0.001242 |
0.1512 |
b0879 |
macB |
-8.34 |
0.466885 |
135 -- 159 |
1 -- 22 |
macrolide ABC transporter peremase/ATPase |
|
_____________134_________________________160\n_____________|___________________________|\n5'-AAU...GUUGA__U_________GCUU___________GAUGA...CGG-3'\n______________GA_UGUCAAAGG____GAAGC_G_GGC\n______________||_::||||||:____:||||_|_|||\n______________CU_GUAGUUUCU____UUUCG_C_CCG\n3'-UUU...UACCC_____________________U_A___-5'\n_____________|__________________________|\n_____________23_________________________1\n |
140 -- 146 |
12 -- 18 |
-17.2972 kcal/mol |
7.41924 kcal/mol |
1.54023 kcal/mol |
134 160@LB@ | |@LB@5'-AAU...GUUGA U GCUU GAUGA...CGG-3'@LB@ GA UGUCAAAGG GAAGC G GGC@LB@ || ::||||||: :|||| | |||@LB@ CU GUAGUUUCU UUUCG C CCG@LB@3'-UUU...UACCC U A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -8.34 kcal/mol@LB@Hybridization Energy -17.2972 kcal/mol@LB@Unfolding Energy - mRNA 7.41924 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 135 -- 159@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 140 -- 146@LB@Position Seed - sRNA 12 -- 18@LB@ |