147 |
0.01091 |
0.2504 |
b2720 |
hycF |
-14.84 |
0.030299 |
116 -- 133 |
1 -- 16 |
formate hydrogenlyase complex iron-sulfur protein |
|
_____________115________________134\n_____________|__________________|\n5'-CGA...CGUAA___________AA_____GCCGU...CAG-3'\n______________GAAGAAGAGCA__GUGGU\n______________:|||||:||||__||||:\n______________UUUCUUUUCGU__CACCG\n3'-UUU...UGUAG__________________-5'\n_____________|_________________|\n_____________17________________1\n |
120 -- 126 |
6 -- 12 |
-19.8629 kcal/mol |
3.67538 kcal/mol |
1.34555 kcal/mol |
115 134@LB@ | |@LB@5'-CGA...CGUAA AA GCCGU...CAG-3'@LB@ GAAGAAGAGCA GUGGU@LB@ :|||||:|||| ||||:@LB@ UUUCUUUUCGU CACCG@LB@3'-UUU...UGUAG -5'@LB@ | |@LB@ 17 1@LB@@LB@@LB@Energy -14.84 kcal/mol@LB@Hybridization Energy -19.8629 kcal/mol@LB@Unfolding Energy - mRNA 3.67538 kcal/mol@LB@Unfolding Energy - sRNA 1.34555 kcal/mol@LB@@LB@Position - mRNA 116 -- 133@LB@Position - sRNA 1 -- 16@LB@Position Seed - mRNA 120 -- 126@LB@Position Seed - sRNA 6 -- 12@LB@ |
148 |
0.01095 |
0.2504 |
b0082 |
rsmH |
-17.59 |
0.005541 |
130 -- 156 |
1 -- 25 |
16S rRNA m(4)C1402 methyltransferase SAM-dependent |
|
_____________129_________________________157\n_____________|___________________________|\n5'-UGG...GUCAA__AA________C_C________U___UACCG...GUC-3'\n______________GG__GAUAUCGA_G_AGAGCAGU_GGC\n______________||__||:|||:|_|_|:||||||_|||\n______________CC__CUGUAGUU_C_UUUCGUCA_CCG\n3'-UUU...UUUUA__C_________U_U____________-5'\n_____________|__________________________|\n_____________26_________________________1\n |
146 -- 152 |
4 -- 10 |
-26.6505 kcal/mol |
6.5392 kcal/mol |
2.51748 kcal/mol |
129 157@LB@ | |@LB@5'-UGG...GUCAA AA C C U UACCG...GUC-3'@LB@ GG GAUAUCGA G AGAGCAGU GGC@LB@ || ||:|||:| | |:|||||| |||@LB@ CC CUGUAGUU C UUUCGUCA CCG@LB@3'-UUU...UUUUA C U U -5'@LB@ | |@LB@ 26 1@LB@@LB@@LB@Energy -17.59 kcal/mol@LB@Hybridization Energy -26.6505 kcal/mol@LB@Unfolding Energy - mRNA 6.5392 kcal/mol@LB@Unfolding Energy - sRNA 2.51748 kcal/mol@LB@@LB@Position - mRNA 130 -- 156@LB@Position - sRNA 1 -- 25@LB@Position Seed - mRNA 146 -- 152@LB@Position Seed - sRNA 4 -- 10@LB@ |
149 |
0.01096 |
0.2504 |
b3230 |
rpsI |
-12.23 |
0.111717 |
165 -- 205 |
1 -- 34 |
30S ribosomal subunit protein S9 |
|
_____________164_______________________________________206\n_____________|_________________________________________|\n5'-GUG...AGCAA_______UUCUU______UAAUC____UUAU_____A____UGAAA...GUU-3'\n______________CCGCAAG_____GACAUC_____GGGA____AGGCA_UGGC\n______________||:|||:_____||||||_____:|:|____|:|||_||||\n______________GGUGUUU_____CUGUAG_____UCUU____UUCGU_ACCG\n3'-UUU...CCCGA_______UACCC______UU________________C____-5'\n_____________|________________________________________|\n_____________35_______________________________________1\n |
165 -- 171 |
28 -- 34 |
-26.3465 kcal/mol |
9.84752 kcal/mol |
4.26884 kcal/mol |
164 206@LB@ | |@LB@5'-GUG...AGCAA UUCUU UAAUC UUAU A UGAAA...GUU-3'@LB@ CCGCAAG GACAUC GGGA AGGCA UGGC@LB@ ||:|||: |||||| :|:| |:||| ||||@LB@ GGUGUUU CUGUAG UCUU UUCGU ACCG@LB@3'-UUU...CCCGA UACCC UU C -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -12.23 kcal/mol@LB@Hybridization Energy -26.3465 kcal/mol@LB@Unfolding Energy - mRNA 9.84752 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 165 -- 205@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 28 -- 34@LB@ |
150 |
0.01097 |
0.2504 |
b1878 |
flhE |
-16.24 |
0.013409 |
257 -- 279 |
3 -- 25 |
proton seal during flagellar secretion |
|
_____________256_____________________280\n_____________|_______________________|\n5'-CGU...GGGGA________G_C___C________UAGGA...AUC-3'\n______________GGGGAUGU_G_AGG_AAGUAGUG\n______________|||||::|_:_||:_|||:||||\n______________CCCCUGUA_U_UCU_UUCGUCAC\n3'-UUU...UUUUA________G_U___U________CG-5'\n_____________|_______________________|\n_____________26______________________2\n |
273 -- 279 |
3 -- 9 |
-26.0465 kcal/mol |
7.2914 kcal/mol |
2.5166 kcal/mol |
256 280@LB@ | |@LB@5'-CGU...GGGGA G C C UAGGA...AUC-3'@LB@ GGGGAUGU G AGG AAGUAGUG@LB@ |||||::| : ||: |||:||||@LB@ CCCCUGUA U UCU UUCGUCAC@LB@3'-UUU...UUUUA G U U CG-5'@LB@ | |@LB@ 26 2@LB@@LB@@LB@Energy -16.24 kcal/mol@LB@Hybridization Energy -26.0465 kcal/mol@LB@Unfolding Energy - mRNA 7.2914 kcal/mol@LB@Unfolding Energy - sRNA 2.5166 kcal/mol@LB@@LB@Position - mRNA 257 -- 279@LB@Position - sRNA 3 -- 25@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 3 -- 9@LB@ |
151 |
0.01116 |
0.2504 |
b0903 |
pflB |
-10.70 |
0.211701 |
140 -- 166 |
4 -- 34 |
formate C-acetyltransferase 1 anaerobic; pyruvate formate-lyase 1 |
|
_____________139_____________________________167\n_____________|_______________________________|\n5'-CAC...GACCA____U______U__________UAC______AAAUA...ACU-3'\n______________CCAU__AAUGG___UGUCGAAG____GCAGU\n______________|||:__|||||___::||:|||____|||||\n______________GGUG__UUACC___GUAGUUUC____CGUCA\n3'-UUU...CCCGA____UU_____CCU________UUUU_____CCG-5'\n_____________|_______________________________|\n_____________35______________________________3\n |
152 -- 158 |
13 -- 19 |
-21.5315 kcal/mol |
6.56187 kcal/mol |
4.26884 kcal/mol |
139 167@LB@ | |@LB@5'-CAC...GACCA U U UAC AAAUA...ACU-3'@LB@ CCAU AAUGG UGUCGAAG GCAGU@LB@ |||: ||||| ::||:||| |||||@LB@ GGUG UUACC GUAGUUUC CGUCA@LB@3'-UUU...CCCGA UU CCU UUUU CCG-5'@LB@ | |@LB@ 35 3@LB@@LB@@LB@Energy -10.70 kcal/mol@LB@Hybridization Energy -21.5315 kcal/mol@LB@Unfolding Energy - mRNA 6.56187 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 140 -- 166@LB@Position - sRNA 4 -- 34@LB@Position Seed - mRNA 152 -- 158@LB@Position Seed - sRNA 13 -- 19@LB@ |
153 |
0.01124 |
0.2504 |
b0414 |
ribD |
-14.78 |
0.031370 |
153 -- 170 |
1 -- 22 |
fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase |
|
_____________152____________________171\n_____________|______________________|\n5'-AAA...UCGAA____________UU________GAAGA...AAG-3'\n______________GAUAUCAAAGAA______UGGC\n______________||:|||||||||______||||\n______________CUGUAGUUUCUU______ACCG\n3'-UUU...UACCC____________UUCGUC____-5'\n_____________|_____________________|\n_____________23____________________1\n |
158 -- 164 |
11 -- 17 |
-19.3666 kcal/mol |
3.04735 kcal/mol |
1.54023 kcal/mol |
152 171@LB@ | |@LB@5'-AAA...UCGAA UU GAAGA...AAG-3'@LB@ GAUAUCAAAGAA UGGC@LB@ ||:||||||||| ||||@LB@ CUGUAGUUUCUU ACCG@LB@3'-UUU...UACCC UUCGUC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -14.78 kcal/mol@LB@Hybridization Energy -19.3666 kcal/mol@LB@Unfolding Energy - mRNA 3.04735 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 153 -- 170@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 11 -- 17@LB@ |
154 |
0.01125 |
0.2504 |
b3412 |
bioH |
-12.84 |
0.084220 |
262 -- 288 |
1 -- 28 |
pimeloyl-ACP methyl ester carboxylesterase |
|
_____________261__________________________289\n_____________|____________________________|\n5'-GGC...GCACG_________UGAAUGCC___________GUUGC...ACG-3'\n______________GAUGGGGAC________GAAGU_GUGGC\n______________:||||||||________:|||:_|||||\n______________UUACCCCUG________UUUCG_CACCG\n3'-UUU...GUGUU_________UAGUUUCU_____U_____-5'\n_____________|___________________________|\n_____________29__________________________1\n |
264 -- 270 |
20 -- 26 |
-27.647 kcal/mol |
12.2839 kcal/mol |
2.519 kcal/mol |
261 289@LB@ | |@LB@5'-GGC...GCACG UGAAUGCC GUUGC...ACG-3'@LB@ GAUGGGGAC GAAGU GUGGC@LB@ :|||||||| :|||: |||||@LB@ UUACCCCUG UUUCG CACCG@LB@3'-UUU...GUGUU UAGUUUCU U -5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -27.647 kcal/mol@LB@Unfolding Energy - mRNA 12.2839 kcal/mol@LB@Unfolding Energy - sRNA 2.519 kcal/mol@LB@@LB@Position - mRNA 262 -- 288@LB@Position - sRNA 1 -- 28@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 20 -- 26@LB@ |
155 |
0.01136 |
0.2504 |
b2168 |
fruK |
-7.75 |
0.545043 |
91 -- 105 |
7 -- 22 |
fructose-1-phosphate kinase |
|
_____________90_______________106\n_____________|________________|\n5'-AAA...CACUU________________CAUCG...CCA-3'\n______________GGCGUU_AAGAAAGGU\n______________|:|:|:_||||||:|:\n______________CUGUAG_UUCUUUUCG\n3'-UUU...UACCC______U_________UCACCG-5'\n_____________|________________|\n_____________23_______________6\n |
99 -- 105 |
7 -- 13 |
-14.0922 kcal/mol |
5.75103 kcal/mol |
0.590875 kcal/mol |
90 106@LB@ | |@LB@5'-AAA...CACUU CAUCG...CCA-3'@LB@ GGCGUU AAGAAAGGU@LB@ |:|:|: ||||||:|:@LB@ CUGUAG UUCUUUUCG@LB@3'-UUU...UACCC U UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -7.75 kcal/mol@LB@Hybridization Energy -14.0922 kcal/mol@LB@Unfolding Energy - mRNA 5.75103 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 91 -- 105@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 99 -- 105@LB@Position Seed - sRNA 7 -- 13@LB@ |
156 |
0.01139 |
0.2504 |
b0197 |
metQ |
-9.46 |
0.330846 |
169 -- 205 |
1 -- 33 |
DL-methionine transporter subunit |
|
_____________168_____________________________________206\n_____________|_______________________________________|\n5'-GUG...UUCAA_____CAUAAAUA___________GAAUAA_________GUUCA...UUA-3'\n______________CACAA_________AUUGAAGAAG______GGUA_UGGC\n______________|||||_________||::|||||:______:|:|_||||\n______________GUGUU_________UAGUUUCUUU______UCGU_ACCG\n3'-UUU...CCGAG_____UUACCCCUG____________________C____-5'\n_____________|______________________________________|\n_____________34_____________________________________1\n |
185 -- 191 |
10 -- 16 |
-16.9822 kcal/mol |
4.44131 kcal/mol |
3.07861 kcal/mol |
168 206@LB@ | |@LB@5'-GUG...UUCAA CAUAAAUA GAAUAA GUUCA...UUA-3'@LB@ CACAA AUUGAAGAAG GGUA UGGC@LB@ ||||| ||::|||||: :|:| ||||@LB@ GUGUU UAGUUUCUUU UCGU ACCG@LB@3'-UUU...CCGAG UUACCCCUG C -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -9.46 kcal/mol@LB@Hybridization Energy -16.9822 kcal/mol@LB@Unfolding Energy - mRNA 4.44131 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 169 -- 205@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 185 -- 191@LB@Position Seed - sRNA 10 -- 16@LB@ |
157 |
0.0114 |
0.2504 |
b3833 |
ubiE |
-14.57 |
0.035245 |
198 -- 236 |
1 -- 30 |
bifunctional 2-octaprenyl-6-methoxy-1 4-benzoquinone methylase/ S-adenosylmethionine:2-DMK methyltransferase |
|
_____________197_____________________________________237\n_____________|_______________________________________|\n5'-ACA...GCAUU_______U____AA____C______CGAC___CUU____UUUCA...CAU-3'\n______________GAGAUGG_GGAU__GUCA_AAGAAA____GCA___UGGU\n______________:|:||||_|||:__:|||_||||||____|||___|||:\n______________UUUUACC_CCUG__UAGU_UUCUUU____CGU___ACCG\n3'-UUU...AGGUG_________________________U______C______-5'\n_____________|______________________________________|\n_____________31_____________________________________1\n |
198 -- 204 |
24 -- 30 |
-23.6374 kcal/mol |
6.55293 kcal/mol |
2.51911 kcal/mol |
197 237@LB@ | |@LB@5'-ACA...GCAUU U AA C CGAC CUU UUUCA...CAU-3'@LB@ GAGAUGG GGAU GUCA AAGAAA GCA UGGU@LB@ :|:|||| |||: :||| |||||| ||| |||:@LB@ UUUUACC CCUG UAGU UUCUUU CGU ACCG@LB@3'-UUU...AGGUG U C -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -14.57 kcal/mol@LB@Hybridization Energy -23.6374 kcal/mol@LB@Unfolding Energy - mRNA 6.55293 kcal/mol@LB@Unfolding Energy - sRNA 2.51911 kcal/mol@LB@@LB@Position - mRNA 198 -- 236@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 24 -- 30@LB@ |