7 |
0.0001218 |
0.05555 |
b1811 |
yoaH |
-21.30 |
0.000256 |
259 -- 293 |
1 -- 35 |
UPF0181 family protein |
|
_____________258__________________________________294\n_____________|____________________________________|\n5'-ACG...GCGGA____G___C__AU____________U______C___CAGGCAA-3'\n______________UCCA_GAA_UG__GGCA_CAAGGGA_GAGCAG_GGC\n______________||||_:||_||__|:||_|||:|:|_:|||||_|||\n______________AGGU_UUU_AC__CUGU_GUUUCUU_UUCGUC_CCG\n3'-UUU...ACCCG____G___U__CC____A______________A___-5'\n_____________|___________________________________|\n_____________36__________________________________1\n |
276 -- 282 |
11 -- 17 |
-33.9537 kcal/mol |
7.61738 kcal/mol |
5.03645 kcal/mol |
258 294@LB@ | |@LB@5'-ACG...GCGGA G C AU U C CAGGCAA-3'@LB@ UCCA GAA UG GGCA CAAGGGA GAGCAG GGC@LB@ |||| :|| || |:|| |||:|:| :||||| |||@LB@ AGGU UUU AC CUGU GUUUCUU UUCGUC CCG@LB@3'-UUU...ACCCG G U CC A A -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -21.30 kcal/mol@LB@Hybridization Energy -33.9537 kcal/mol@LB@Unfolding Energy - mRNA 7.61738 kcal/mol@LB@Unfolding Energy - sRNA 5.03645 kcal/mol@LB@@LB@Position - mRNA 259 -- 293@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 276 -- 282@LB@Position Seed - sRNA 11 -- 17@LB@ |
8 |
0.0001267 |
0.05555 |
b2697 |
alaS |
-16.66 |
0.010303 |
247 -- 274 |
1 -- 35 |
alanyl-tRNA synthetase |
|
_____________246_________________________________275\n_____________|___________________________________|\n5'-CCA...CUUUU_______UAA______________________U__CAGCA...ACG-3'\n______________UCCAUAG____GGGACAUCA______GGUAGU_GC\n______________||||:|:____|||||||||______:|:|||_||\n______________AGGUGUU____CCCUGUAGU______UCGUCA_CG\n3'-UUU...ACCCG_______UUAC_________UUCUUU______C__-5'\n_____________|__________________________________|\n_____________36_________________________________1\n |
259 -- 265 |
16 -- 22 |
-29.5579 kcal/mol |
7.86268 kcal/mol |
5.03645 kcal/mol |
246 275@LB@ | |@LB@5'-CCA...CUUUU UAA U CAGCA...ACG-3'@LB@ UCCAUAG GGGACAUCA GGUAGU GC@LB@ ||||:|: ||||||||| :|:||| ||@LB@ AGGUGUU CCCUGUAGU UCGUCA CG@LB@3'-UUU...ACCCG UUAC UUCUUU C -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -16.66 kcal/mol@LB@Hybridization Energy -29.5579 kcal/mol@LB@Unfolding Energy - mRNA 7.86268 kcal/mol@LB@Unfolding Energy - sRNA 5.03645 kcal/mol@LB@@LB@Position - mRNA 247 -- 274@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 16 -- 22@LB@ |
9 |
0.0002541 |
0.09908 |
b4000 |
hupA |
-15.77 |
0.017828 |
82 -- 110 |
1 -- 35 |
HU DNA-binding transcriptional regulator alpha subunit |
|
_____________81__________________________________111\n_____________|___________________________________|\n5'-UUU...UCUGG______UUUG_________________AA______UAUCG...CUG-3'\n______________UCUACA____GGGGGCG______AAAA__AGUGGC\n______________||:|||____||||:|:______||||__||||||\n______________AGGUGU____CCCCUGU______UUUU__UCACCG\n3'-UUU...ACCCG______UUUA_______AGUUUC____CG______-5'\n_____________|__________________________________|\n_____________36_________________________________1\n |
92 -- 98 |
19 -- 25 |
-28.6527 kcal/mol |
7.84855 kcal/mol |
5.03645 kcal/mol |
81 111@LB@ | |@LB@5'-UUU...UCUGG UUUG AA UAUCG...CUG-3'@LB@ UCUACA GGGGGCG AAAA AGUGGC@LB@ ||:||| ||||:|: |||| ||||||@LB@ AGGUGU CCCCUGU UUUU UCACCG@LB@3'-UUU...ACCCG UUUA AGUUUC CG -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -15.77 kcal/mol@LB@Hybridization Energy -28.6527 kcal/mol@LB@Unfolding Energy - mRNA 7.84855 kcal/mol@LB@Unfolding Energy - sRNA 5.03645 kcal/mol@LB@@LB@Position - mRNA 82 -- 110@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 19 -- 25@LB@ |
10 |
0.0003274 |
0.1087 |
b1020 |
phoH |
-9.93 |
0.281763 |
74 -- 85 |
48 -- 59 |
ATP-binding protein; putative PhoH family P-loop ATPase |
|
_____________73___________86\n_____________|____________|\n5'-AAU...AUGUC____________UUUUA...AAC-3'\n______________ACUGAAAUGGUG\n______________||:|||||||:|\n______________UGGCUUUACCGC\n3'-UUU...GAACU____________CCCAA...CCG-5'\n_____________|____________|\n_____________60___________47\n |
79 -- 85 |
48 -- 54 |
-17.134 kcal/mol |
3.24305 kcal/mol |
3.96136 kcal/mol |
73 86@LB@ | |@LB@5'-AAU...AUGUC UUUUA...AAC-3'@LB@ ACUGAAAUGGUG@LB@ ||:|||||||:|@LB@ UGGCUUUACCGC@LB@3'-UUU...GAACU CCCAA...CCG-5'@LB@ | |@LB@ 60 47@LB@@LB@@LB@Energy -9.93 kcal/mol@LB@Hybridization Energy -17.134 kcal/mol@LB@Unfolding Energy - mRNA 3.24305 kcal/mol@LB@Unfolding Energy - sRNA 3.96136 kcal/mol@LB@@LB@Position - mRNA 74 -- 85@LB@Position - sRNA 48 -- 59@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 48 -- 54@LB@ |
11 |
0.0003708 |
0.1087 |
b4201 |
priB |
-14.90 |
0.029310 |
176 -- 193 |
6 -- 26 |
primosomal protein N |
|
_____________175___________________194\n_____________|_____________________|\n5'-AGG...GAAGC__________U__________AUUUC...AUC-3'\n______________UGGGGAU_UC___GAAGAGUA\n______________||||||:_||___|||:||:|\n______________ACCCCUG_AG___CUUUUCGU\n3'-UUU...GUUUU_______U__UUU________CACCG-5'\n_____________|_____________________|\n_____________27____________________5\n |
187 -- 193 |
6 -- 12 |
-19.0189 kcal/mol |
3.41067 kcal/mol |
0.706421 kcal/mol |
175 194@LB@ | |@LB@5'-AGG...GAAGC U AUUUC...AUC-3'@LB@ UGGGGAU UC GAAGAGUA@LB@ ||||||: || |||:||:|@LB@ ACCCCUG AG CUUUUCGU@LB@3'-UUU...GUUUU U UUU CACCG-5'@LB@ | |@LB@ 27 5@LB@@LB@@LB@Energy -14.90 kcal/mol@LB@Hybridization Energy -19.0189 kcal/mol@LB@Unfolding Energy - mRNA 3.41067 kcal/mol@LB@Unfolding Energy - sRNA 0.706421 kcal/mol@LB@@LB@Position - mRNA 176 -- 193@LB@Position - sRNA 6 -- 26@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 6 -- 12@LB@ |
12 |
0.0004023 |
0.1087 |
b3176 |
glmM |
-16.74 |
0.009770 |
131 -- 153 |
1 -- 22 |
phosphoglucosamine mutase |
|
_____________130_____________________154\n_____________|_______________________|\n5'-GUU...UUCAU_____________CC____AA__GAUGC...CGG-3'\n______________GACGUCAAAGAAA__GUAG__GC\n______________|||:|||||||||__|:||__||\n______________CUGUAGUUUCUUU__CGUC__CG\n3'-UUU...UACCC_____________U_____AC__-5'\n_____________|______________________|\n_____________23_____________________1\n |
137 -- 143 |
10 -- 16 |
-21.6768 kcal/mol |
3.39473 kcal/mol |
1.54023 kcal/mol |
130 154@LB@ | |@LB@5'-GUU...UUCAU CC AA GAUGC...CGG-3'@LB@ GACGUCAAAGAAA GUAG GC@LB@ |||:||||||||| |:|| ||@LB@ CUGUAGUUUCUUU CGUC CG@LB@3'-UUU...UACCC U AC -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -16.74 kcal/mol@LB@Hybridization Energy -21.6768 kcal/mol@LB@Unfolding Energy - mRNA 3.39473 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 131 -- 153@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 137 -- 143@LB@Position Seed - sRNA 10 -- 16@LB@ |
13 |
0.0004028 |
0.1087 |
b1107 |
nagZ |
-16.35 |
0.012500 |
184 -- 201 |
3 -- 21 |
beta N-acetyl-glucosaminidase |
|
_____________183_________________202\n_____________|___________________|\n5'-AUU...AUAAA___AU______________UGGGU...CGC-3'\n______________ACA___AAGGAGAGCAGUG\n______________|||___|||:|:|||||||\n______________UGU___UUCUUUUCGUCAC\n3'-UUU...ACCCC___AGU_____________CG-5'\n_____________|___________________|\n_____________22__________________2\n |
195 -- 201 |
3 -- 9 |
-19.0842 kcal/mol |
1.22154 kcal/mol |
1.5107 kcal/mol |
183 202@LB@ | |@LB@5'-AUU...AUAAA AU UGGGU...CGC-3'@LB@ ACA AAGGAGAGCAGUG@LB@ ||| |||:|:|||||||@LB@ UGU UUCUUUUCGUCAC@LB@3'-UUU...ACCCC AGU CG-5'@LB@ | |@LB@ 22 2@LB@@LB@@LB@Energy -16.35 kcal/mol@LB@Hybridization Energy -19.0842 kcal/mol@LB@Unfolding Energy - mRNA 1.22154 kcal/mol@LB@Unfolding Energy - sRNA 1.5107 kcal/mol@LB@@LB@Position - mRNA 184 -- 201@LB@Position - sRNA 3 -- 21@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 3 -- 9@LB@ |
14 |
0.0006392 |
0.1243 |
b3745 |
viaA |
-13.90 |
0.050132 |
246 -- 264 |
10 -- 25 |
stimulator of RavA ATPase activity; von Willebrand factor domain protein |
|
_____________245_________________265\n_____________|___________________|\n5'-ACG...GCGAA_A_____UG__________UGAUC...CGG-3'\n______________G_GGGAU__AUCGAAGAGA\n______________|_||||:__|||:||||:|\n______________C_CCCUG__UAGUUUCUUU\n3'-UUU...UUUUA___________________UCGUC...CCG-5'\n_____________|___________________|\n_____________26__________________9\n |
258 -- 264 |
10 -- 16 |
-16.9183 kcal/mol |
2.35086 kcal/mol |
0.670388 kcal/mol |
245 265@LB@ | |@LB@5'-ACG...GCGAA A UG UGAUC...CGG-3'@LB@ G GGGAU AUCGAAGAGA@LB@ | ||||: |||:||||:|@LB@ C CCCUG UAGUUUCUUU@LB@3'-UUU...UUUUA UCGUC...CCG-5'@LB@ | |@LB@ 26 9@LB@@LB@@LB@Energy -13.90 kcal/mol@LB@Hybridization Energy -16.9183 kcal/mol@LB@Unfolding Energy - mRNA 2.35086 kcal/mol@LB@Unfolding Energy - sRNA 0.670388 kcal/mol@LB@@LB@Position - mRNA 246 -- 264@LB@Position - sRNA 10 -- 25@LB@Position Seed - mRNA 258 -- 264@LB@Position Seed - sRNA 10 -- 16@LB@ |
15 |
0.0006403 |
0.1243 |
b0178 |
skp |
-17.37 |
0.006465 |
90 -- 106 |
1 -- 17 |
periplasmic chaperone |
|
_____________89________________107\n_____________|_________________|\n5'-CUC...CUCCA________U________AGUGU...UCC-3'\n______________CAAAGGAA_GUAGUGGU\n______________|||||:||_|:|||||:\n______________GUUUCUUU_CGUCACCG\n3'-UUU...CUGUA________U________-5'\n_____________|________________|\n_____________18_______________1\n |
100 -- 106 |
1 -- 7 |
-21.6829 kcal/mol |
2.87621 kcal/mol |
1.43853 kcal/mol |
89 107@LB@ | |@LB@5'-CUC...CUCCA U AGUGU...UCC-3'@LB@ CAAAGGAA GUAGUGGU@LB@ |||||:|| |:|||||:@LB@ GUUUCUUU CGUCACCG@LB@3'-UUU...CUGUA U -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -17.37 kcal/mol@LB@Hybridization Energy -21.6829 kcal/mol@LB@Unfolding Energy - mRNA 2.87621 kcal/mol@LB@Unfolding Energy - sRNA 1.43853 kcal/mol@LB@@LB@Position - mRNA 90 -- 106@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 1 -- 7@LB@ |
16 |
0.0006527 |
0.1243 |
b2563 |
acpS |
-16.60 |
0.010715 |
145 -- 164 |
1 -- 23 |
holo-[acyl-carrier-protein] synthase 1 |
|
_____________144_____________________165\n_____________|_______________________|\n5'-GCC...UGACC______G_____U__________AGAAA...GCG-3'\n______________GGAC_U_AAAGA___GCGGUGGC\n______________||||_|_|||||___||:|||||\n______________CCUG_A_UUUCU___CGUCACCG\n3'-UUU...UUACC____U_G_____UUU________-5'\n_____________|______________________|\n_____________24_____________________1\n |
158 -- 164 |
1 -- 7 |
-25.7246 kcal/mol |
7.54829 kcal/mol |
1.57928 kcal/mol |
144 165@LB@ | |@LB@5'-GCC...UGACC G U AGAAA...GCG-3'@LB@ GGAC U AAAGA GCGGUGGC@LB@ |||| | ||||| ||:|||||@LB@ CCUG A UUUCU CGUCACCG@LB@3'-UUU...UUACC U G UUU -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -16.60 kcal/mol@LB@Hybridization Energy -25.7246 kcal/mol@LB@Unfolding Energy - mRNA 7.54829 kcal/mol@LB@Unfolding Energy - sRNA 1.57928 kcal/mol@LB@@LB@Position - mRNA 145 -- 164@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 1 -- 7@LB@ |