126 |
0.009112 |
0.2491 |
b0299 |
insF1 |
-12.99 |
0.078544 |
136 -- 158 |
1 -- 32 |
IS3 transposase B |
b0372 b0541 b1026 b2089 b3558 |
_____________135______________________________159\n_____________|________________________________|\n5'-ACU...AGCUG______C_________________________UAUCC...GUC-3'\n______________GCAGAA__GGGAU______GAAGAGC__UGGC\n______________:||:||__||||:______|||:|||__||||\n______________UGUUUU__CCCUG______CUUUUCG__ACCG\n3'-UUU...CGAGG______AC_____UAGUUU_______UC____-5'\n_____________|_______________________________|\n_____________33______________________________1\n |
148 -- 154 |
7 -- 13 |
-22.7833 kcal/mol |
7.25293 kcal/mol |
2.53929 kcal/mol |
135 159@LB@ | |@LB@5'-ACU...AGCUG C UAUCC...GUC-3'@LB@ GCAGAA GGGAU GAAGAGC UGGC@LB@ :||:|| ||||: |||:||| ||||@LB@ UGUUUU CCCUG CUUUUCG ACCG@LB@3'-UUU...CGAGG AC UAGUUU UC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -12.99 kcal/mol@LB@Hybridization Energy -22.7833 kcal/mol@LB@Unfolding Energy - mRNA 7.25293 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 136 -- 158@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 148 -- 154@LB@Position Seed - sRNA 7 -- 13@LB@ |
167 |
0.01216 |
0.2504 |
b1013 |
rutR |
-12.90 |
0.082087 |
181 -- 218 |
3 -- 35 |
rut operon transcriptional repressor for |
b0796 |
_____________180________________________________________219\n_____________|__________________________________________|\n5'-CAA...GCCAA_______________GAGCGCAUGACG_____C_________AAAAC...AAU-3'\n______________UCUACAAGA_GGGGA____________CAAGG____GCAGUG\n______________||:||||:|_|||||____________|||:|____||||||\n______________AGGUGUUUU_CCCCU____________GUUUC____CGUCAC\n3'-UUU...ACCCG_________A_____GUA______________UUUU______CG-5'\n_____________|__________________________________________|\n_____________36_________________________________________2\n |
181 -- 187 |
29 -- 35 |
-29.1146 kcal/mol |
11.1798 kcal/mol |
5.03644 kcal/mol |
180 219@LB@ | |@LB@5'-CAA...GCCAA GAGCGCAUGACG C AAAAC...AAU-3'@LB@ UCUACAAGA GGGGA CAAGG GCAGUG@LB@ ||:||||:| ||||| |||:| ||||||@LB@ AGGUGUUUU CCCCU GUUUC CGUCAC@LB@3'-UUU...ACCCG A GUA UUUU CG-5'@LB@ | |@LB@ 36 2@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -29.1146 kcal/mol@LB@Unfolding Energy - mRNA 11.1798 kcal/mol@LB@Unfolding Energy - sRNA 5.03644 kcal/mol@LB@@LB@Position - mRNA 181 -- 218@LB@Position - sRNA 3 -- 35@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 29 -- 35@LB@ |
6 |
9.344e-05 |
0.05465 |
b2215 |
ompC |
-14.72 |
0.032428 |
133 -- 159 |
1 -- 28 |
outer membrane porin protein C |
b0929 b0241 b1377 |
_____________132____________________________160\n_____________|______________________________|\n5'-AUC...UGAUU____A___UUA_____UAU___________AUAAA...AUC-3'\n______________AAUG_GGG___AUCAG______GCAGUGGC\n______________||||_|||___||||:______||||||||\n______________UUAC_CCC___UAGUU______CGUCACCG\n3'-UUU...GUGUU________UG______UCUUUU________-5'\n_____________|_____________________________|\n_____________29____________________________1\n |
153 -- 159 |
1 -- 7 |
-26.8714 kcal/mol |
9.63393 kcal/mol |
2.519 kcal/mol |
132 160@LB@ | |@LB@5'-AUC...UGAUU A UUA UAU AUAAA...AUC-3'@LB@ AAUG GGG AUCAG GCAGUGGC@LB@ |||| ||| ||||: ||||||||@LB@ UUAC CCC UAGUU CGUCACCG@LB@3'-UUU...GUGUU UG UCUUUU -5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -14.72 kcal/mol@LB@Hybridization Energy -26.8714 kcal/mol@LB@Unfolding Energy - mRNA 9.63393 kcal/mol@LB@Unfolding Energy - sRNA 2.519 kcal/mol@LB@@LB@Position - mRNA 133 -- 159@LB@Position - sRNA 1 -- 28@LB@Position Seed - mRNA 153 -- 159@LB@Position Seed - sRNA 1 -- 7@LB@ |
152 |
0.01123 |
0.2504 |
b1872 |
torZ |
-17.40 |
0.006326 |
76 -- 107 |
1 -- 34 |
trimethylamine N-oxide reductase system III catalytic subunit |
b0997 b3551 |
_____________75___________________________________108\n_____________|____________________________________|\n5'-ACG...CAUUG___AA_________________CC_________A__GAAAA...AGA-3'\n______________CCA__GGAAUGGGGGCA_CGAA____AGCA_UG_GC\n______________|||__::|||||||:||_|:||____||||_||_||\n______________GGU__UUUUACCCCUGU_GUUU____UCGU_AC_CG\n3'-UUU...CCCGA___G_____________A____CUUU____C_____-5'\n_____________|___________________________________|\n_____________35__________________________________1\n |
86 -- 92 |
19 -- 25 |
-29.6219 kcal/mol |
7.95271 kcal/mol |
4.26884 kcal/mol |
75 108@LB@ | |@LB@5'-ACG...CAUUG AA CC A GAAAA...AGA-3'@LB@ CCA GGAAUGGGGGCA CGAA AGCA UG GC@LB@ ||| ::|||||||:|| |:|| |||| || ||@LB@ GGU UUUUACCCCUGU GUUU UCGU AC CG@LB@3'-UUU...CCCGA G A CUUU C -5'@LB@ | |@LB@ 35 1@LB@@LB@@LB@Energy -17.40 kcal/mol@LB@Hybridization Energy -29.6219 kcal/mol@LB@Unfolding Energy - mRNA 7.95271 kcal/mol@LB@Unfolding Energy - sRNA 4.26884 kcal/mol@LB@@LB@Position - mRNA 76 -- 107@LB@Position - sRNA 1 -- 34@LB@Position Seed - mRNA 86 -- 92@LB@Position Seed - sRNA 19 -- 25@LB@ |
19 |
0.000738 |
0.1243 |
b1508 |
hipB |
-18.00 |
0.004180 |
266 -- 295 |
1 -- 32 |
antitoxin of HipAB toxin-antitoxin system |
b1299 b1434 |
_____________265________________________________296\n_____________|__________________________________|\n5'-AUG...CGCCA_________CU___________C___________GAAAA-3'\n______________GCAAAAUGG__GGACG_CAGAG__GAGC__UGGC\n______________:||||||||__||||:_||:||__:|||__||||\n______________UGUUUUACC__CCUGU_GUUUC__UUCG__ACCG\n3'-UUU...CGAGG________________A_____UU____UC____-5'\n_____________|_________________________________|\n_____________33________________________________1\n |
268 -- 274 |
24 -- 30 |
-30.0826 kcal/mol |
9.54799 kcal/mol |
2.53929 kcal/mol |
265 296@LB@ | |@LB@5'-AUG...CGCCA CU C GAAAA-3'@LB@ GCAAAAUGG GGACG CAGAG GAGC UGGC@LB@ :|||||||| ||||: ||:|| :||| ||||@LB@ UGUUUUACC CCUGU GUUUC UUCG ACCG@LB@3'-UUU...CGAGG A UU UC -5'@LB@ | |@LB@ 33 1@LB@@LB@@LB@Energy -18.00 kcal/mol@LB@Hybridization Energy -30.0826 kcal/mol@LB@Unfolding Energy - mRNA 9.54799 kcal/mol@LB@Unfolding Energy - sRNA 2.53929 kcal/mol@LB@@LB@Position - mRNA 266 -- 295@LB@Position - sRNA 1 -- 32@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 24 -- 30@LB@ |
24 |
0.0009771 |
0.1361 |
b4295 |
yjhU |
-16.20 |
0.013710 |
198 -- 226 |
5 -- 30 |
putative DNA-binding transcriptional regulator; KpLE2 phage-like element |
b1512 |
_____________197___________________________227\n_____________|_____________________________|\n5'-GUA...AUACA_______AUA__G______C___C_____CCUGU...UUG-3'\n______________AAAGUGG___GA_AUCAAA_AAA_AGCAG\n______________|||:|||___||_||||||_|||_|||||\n______________UUUUACC___CU_UAGUUU_UUU_UCGUC\n3'-UUU...AGGUG_______C____G______C_________ACCG-5'\n_____________|_____________________________|\n_____________31____________________________4\n |
198 -- 204 |
24 -- 30 |
-21.4023 kcal/mol |
2.69702 kcal/mol |
2.50278 kcal/mol |
197 227@LB@ | |@LB@5'-GUA...AUACA AUA G C C CCUGU...UUG-3'@LB@ AAAGUGG GA AUCAAA AAA AGCAG@LB@ |||:||| || |||||| ||| |||||@LB@ UUUUACC CU UAGUUU UUU UCGUC@LB@3'-UUU...AGGUG C G C ACCG-5'@LB@ | |@LB@ 31 4@LB@@LB@@LB@Energy -16.20 kcal/mol@LB@Hybridization Energy -21.4023 kcal/mol@LB@Unfolding Energy - mRNA 2.69702 kcal/mol@LB@Unfolding Energy - sRNA 2.50278 kcal/mol@LB@@LB@Position - mRNA 198 -- 226@LB@Position - sRNA 5 -- 30@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 24 -- 30@LB@ |
67 |
0.003548 |
0.1858 |
b4412 |
hokC |
-18.22 |
0.003564 |
16 -- 36 |
7 -- 32 |
toxic membrane protein small |
b1562 b0018 |
_____________15_________________________37\n_____________|__________________________|\n5'-AUU...AUAAA__________________________GAUAU...ACA-3'\n______________ACAAAAUGGG____UUAAAGAGA_GC\n______________||||||||||____|:|||||:|_||\n______________UGUUUUACCC____AGUUUCUUU_CG\n3'-UUU...CGAGG__________CUGU_________U__UCACCG-5'\n_____________|__________________________|\n_____________33_________________________6\n |
28 -- 34 |
10 -- 16 |
-22.2189 kcal/mol |
1.46836 kcal/mol |
2.53437 kcal/mol |
15 37@LB@ | |@LB@5'-AUU...AUAAA GAUAU...ACA-3'@LB@ ACAAAAUGGG UUAAAGAGA GC@LB@ |||||||||| |:|||||:| ||@LB@ UGUUUUACCC AGUUUCUUU CG@LB@3'-UUU...CGAGG CUGU U UCACCG-5'@LB@ | |@LB@ 33 6@LB@@LB@@LB@Energy -18.22 kcal/mol@LB@Hybridization Energy -22.2189 kcal/mol@LB@Unfolding Energy - mRNA 1.46836 kcal/mol@LB@Unfolding Energy - sRNA 2.53437 kcal/mol@LB@@LB@Position - mRNA 16 -- 36@LB@Position - sRNA 7 -- 32@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 10 -- 16@LB@ |
172 |
0.01269 |
0.2504 |
b0571 |
cusR |
-10.48 |
0.230388 |
14 -- 48 |
1 -- 33 |
response regulator in two-component regulatory system with CusS |
b1969 |
_____________13___________________________________49\n_____________|____________________________________|\n5'-AGC...GGCCA__________CA__A___UAC__________UA___UCAUA...GGC-3'\n______________CACAAAAUGG__GA_GUU___AAGGAGA_CA__GGC\n______________||||||||||__||_:|:___|||:|:|_||__|||\n______________GUGUUUUACC__CU_UAG___UUCUUUU_GU__CCG\n3'-UUU...CCGAG__________C___G___U_________C__CA___-5'\n_____________|___________________________________|\n_____________34__________________________________1\n |
35 -- 41 |
9 -- 15 |
-22.821 kcal/mol |
9.26274 kcal/mol |
3.07861 kcal/mol |
13 49@LB@ | |@LB@5'-AGC...GGCCA CA A UAC UA UCAUA...GGC-3'@LB@ CACAAAAUGG GA GUU AAGGAGA CA GGC@LB@ |||||||||| || :|: |||:|:| || |||@LB@ GUGUUUUACC CU UAG UUCUUUU GU CCG@LB@3'-UUU...CCGAG C G U C CA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.48 kcal/mol@LB@Hybridization Energy -22.821 kcal/mol@LB@Unfolding Energy - mRNA 9.26274 kcal/mol@LB@Unfolding Energy - sRNA 3.07861 kcal/mol@LB@@LB@Position - mRNA 14 -- 48@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 9 -- 15@LB@ |
141 |
0.01037 |
0.2504 |
b2161 |
nupX |
-15.31 |
0.023296 |
54 -- 80 |
1 -- 26 |
nucleoside permease |
b2164 |
_____________53____________________________81\n_____________|_____________________________|\n5'-UUG...GGUUC_______UA_________U_______C__GGCUA...GCG-3'\n______________UGGGGAU__GUCGAAGAG__GC_GUG_GC\n______________||||||:__:||:||||:__||_|||_||\n______________ACCCCUG__UAGUUUCUU__CG_CAC_CG\n3'-UUU...GUUUU__________________UU__U______-5'\n_____________|____________________________|\n_____________27___________________________1\n |
65 -- 71 |
11 -- 17 |
-27.7009 kcal/mol |
9.87339 kcal/mol |
2.51842 kcal/mol |
53 81@LB@ | |@LB@5'-UUG...GGUUC UA U C GGCUA...GCG-3'@LB@ UGGGGAU GUCGAAGAG GC GUG GC@LB@ ||||||: :||:||||: || ||| ||@LB@ ACCCCUG UAGUUUCUU CG CAC CG@LB@3'-UUU...GUUUU UU U -5'@LB@ | |@LB@ 27 1@LB@@LB@@LB@Energy -15.31 kcal/mol@LB@Hybridization Energy -27.7009 kcal/mol@LB@Unfolding Energy - mRNA 9.87339 kcal/mol@LB@Unfolding Energy - sRNA 2.51842 kcal/mol@LB@@LB@Position - mRNA 54 -- 80@LB@Position - sRNA 1 -- 26@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 11 -- 17@LB@ |
97 |
0.005972 |
0.2161 |
b0768 |
ybhD |
-15.34 |
0.022873 |
51 -- 78 |
6 -- 32 |
putative DNA-binding transcriptional regulator |
b2409 |
_____________50___________________________79\n_____________|____________________________|\n5'-CAG...UUAUU____U____UU__________C______UCUCU...CAU-3'\n______________GCGA_AUGG__ACAUUAAGGG_AAAGCA\n______________:|:|_||||__||||:||:|:_||||||\n______________UGUU_UACC__UGUAGUUUCU_UUUCGU\n3'-UUU...CGAGG____U____CC_________________CACCG-5'\n_____________|____________________________|\n_____________33___________________________5\n |
64 -- 70 |
13 -- 19 |
-24.2506 kcal/mol |
6.37495 kcal/mol |
2.53457 kcal/mol |
50 79@LB@ | |@LB@5'-CAG...UUAUU U UU C UCUCU...CAU-3'@LB@ GCGA AUGG ACAUUAAGGG AAAGCA@LB@ :|:| |||| ||||:||:|: ||||||@LB@ UGUU UACC UGUAGUUUCU UUUCGU@LB@3'-UUU...CGAGG U CC CACCG-5'@LB@ | |@LB@ 33 5@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -24.2506 kcal/mol@LB@Unfolding Energy - mRNA 6.37495 kcal/mol@LB@Unfolding Energy - sRNA 2.53457 kcal/mol@LB@@LB@Position - mRNA 51 -- 78@LB@Position - sRNA 6 -- 32@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 13 -- 19@LB@ |