169 |
0.01228 |
0.2504 |
b3386 |
rpe |
-13.36 |
0.065831 |
171 -- 203 |
3 -- 33 |
D-ribulose-5-phosphate 3-epimerase |
|
_____________170_______________________________204\n_____________|_________________________________|\n5'-CGC...UCACC_______AAAUAAUUC______________A__AAACA...UGC-3'\n______________CGCGAAA_________UCAAGGAGAAGCGG_UG\n______________|:|:|||_________||||:||:||||:|_||\n______________GUGUUUU_________AGUUUCUUUUCGUC_AC\n3'-UUU...CCGAG_______ACCCCUGU__________________CG-5'\n_____________|_________________________________|\n_____________34________________________________2\n |
194 -- 200 |
5 -- 11 |
-23.2607 kcal/mol |
6.82691 kcal/mol |
3.0786 kcal/mol |
170 204@LB@ | |@LB@5'-CGC...UCACC AAAUAAUUC A AAACA...UGC-3'@LB@ CGCGAAA UCAAGGAGAAGCGG UG@LB@ |:|:||| ||||:||:||||:| ||@LB@ GUGUUUU AGUUUCUUUUCGUC AC@LB@3'-UUU...CCGAG ACCCCUGU CG-5'@LB@ | |@LB@ 34 2@LB@@LB@@LB@Energy -13.36 kcal/mol@LB@Hybridization Energy -23.2607 kcal/mol@LB@Unfolding Energy - mRNA 6.82691 kcal/mol@LB@Unfolding Energy - sRNA 3.0786 kcal/mol@LB@@LB@Position - mRNA 171 -- 203@LB@Position - sRNA 3 -- 33@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 5 -- 11@LB@ |
170 |
0.01232 |
0.2504 |
b2580 |
ung |
-11.45 |
0.156876 |
183 -- 205 |
1 -- 22 |
uracil-DNA-glycosylase |
|
_____________182______________________206\n_____________|________________________|\n5'-UCU...UUGAA_______C________G__A____UAACG...CCG-3'\n______________GAU_UCG_AGGAGAGC_AG_UGGC\n______________||:_||:_||:|:|||_||_||||\n______________CUG_AGU_UCUUUUCG_UC_ACCG\n3'-UUU...UACCC___U___U________________-5'\n_____________|_______________________|\n_____________23______________________1\n |
191 -- 197 |
7 -- 13 |
-20.4372 kcal/mol |
7.45123 kcal/mol |
1.54023 kcal/mol |
182 206@LB@ | |@LB@5'-UCU...UUGAA C G A UAACG...CCG-3'@LB@ GAU UCG AGGAGAGC AG UGGC@LB@ ||: ||: ||:|:||| || ||||@LB@ CUG AGU UCUUUUCG UC ACCG@LB@3'-UUU...UACCC U U -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -20.4372 kcal/mol@LB@Unfolding Energy - mRNA 7.45123 kcal/mol@LB@Unfolding Energy - sRNA 1.54023 kcal/mol@LB@@LB@Position - mRNA 183 -- 205@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 7 -- 13@LB@ |
171 |
0.01235 |
0.2504 |
b1092 |
fabD |
-9.75 |
0.300248 |
258 -- 270 |
47 -- 59 |
malonyl-CoA-[acyl-carrier-protein] transacylase |
|
_____________257___________271\n_____________|_____________|\n5'-AAC...UGCUG_____U_______CGAGC...UUG-3'\n______________GCUGA_AUGGCGG\n______________:|:||_|||||||\n______________UGGCU_UACCGCC\n3'-UUU...GAACU_____U_______CCAAC...CCG-5'\n_____________|_____________|\n_____________60____________46\n |
264 -- 270 |
47 -- 53 |
-17.9053 kcal/mol |
4.19285 kcal/mol |
3.96442 kcal/mol |
257 271@LB@ | |@LB@5'-AAC...UGCUG U CGAGC...UUG-3'@LB@ GCUGA AUGGCGG@LB@ :|:|| |||||||@LB@ UGGCU UACCGCC@LB@3'-UUU...GAACU U CCAAC...CCG-5'@LB@ | |@LB@ 60 46@LB@@LB@@LB@Energy -9.75 kcal/mol@LB@Hybridization Energy -17.9053 kcal/mol@LB@Unfolding Energy - mRNA 4.19285 kcal/mol@LB@Unfolding Energy - sRNA 3.96442 kcal/mol@LB@@LB@Position - mRNA 258 -- 270@LB@Position - sRNA 47 -- 59@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 47 -- 53@LB@ |
173 |
0.01269 |
0.2504 |
b4172 |
hfq |
-12.44 |
0.101529 |
181 -- 205 |
1 -- 21 |
global sRNA chaperone; HF-I host factor for RNA phage Q beta replication |
|
_____________180_______________________206\n_____________|_________________________|\n5'-GAA...AAUAA____A__________AG__AA____UAAGG...AAG-3'\n______________GCAU_UAAGGAAAAG__AG__UGGC\n______________:|||_:||:||||||__||__||||\n______________UGUA_GUUUCUUUUC__UC__ACCG\n3'-UUU...ACCCC_______________G_________-5'\n_____________|________________________|\n_____________22_______________________1\n |
189 -- 195 |
8 -- 14 |
-17.6301 kcal/mol |
3.67752 kcal/mol |
1.51103 kcal/mol |
180 206@LB@ | |@LB@5'-GAA...AAUAA A AG AA UAAGG...AAG-3'@LB@ GCAU UAAGGAAAAG AG UGGC@LB@ :||| :||:|||||| || ||||@LB@ UGUA GUUUCUUUUC UC ACCG@LB@3'-UUU...ACCCC G -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -17.6301 kcal/mol@LB@Unfolding Energy - mRNA 3.67752 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 181 -- 205@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 8 -- 14@LB@ |
174 |
0.0127 |
0.2504 |
b1960 |
vsr |
-15.05 |
0.027057 |
161 -- 177 |
1 -- 19 |
DNA mismatch endonuclease of very short patch repair |
|
_____________160_________________178\n_____________|___________________|\n5'-UCG...CAAAA______C____________GUUGC...CCG-3'\n______________AUCAAA___AGGCGGUGGC\n______________||||||___|:||:|||||\n______________UAGUUU___UUCGUCACCG\n3'-UUU...CCCUG______CUU__________-5'\n_____________|__________________|\n_____________20_________________1\n |
171 -- 177 |
1 -- 7 |
-22.0844 kcal/mol |
5.58177 kcal/mol |
1.45734 kcal/mol |
160 178@LB@ | |@LB@5'-UCG...CAAAA C GUUGC...CCG-3'@LB@ AUCAAA AGGCGGUGGC@LB@ |||||| |:||:|||||@LB@ UAGUUU UUCGUCACCG@LB@3'-UUU...CCCUG CUU -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -15.05 kcal/mol@LB@Hybridization Energy -22.0844 kcal/mol@LB@Unfolding Energy - mRNA 5.58177 kcal/mol@LB@Unfolding Energy - sRNA 1.45734 kcal/mol@LB@@LB@Position - mRNA 161 -- 177@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 171 -- 177@LB@Position Seed - sRNA 1 -- 7@LB@ |
175 |
0.01275 |
0.2504 |
b3057 |
bacA |
-10.43 |
0.234919 |
238 -- 261 |
5 -- 26 |
undecaprenyl pyrophosphate phosphatase |
|
_____________237______________________262\n_____________|________________________|\n5'-UUC...AAUAU____U_UG_________UU_A___AAUUU...UUG-3'\n______________UGGG_G__GUCGAAGGA__G_CAG\n______________||||_|__:||:|||:|__|_|||\n______________ACCC_C__UAGUUUCUU__C_GUC\n3'-UUU...GUUUU______UG_________UU_____ACCG-5'\n_____________|________________________|\n_____________27_______________________4\n |
248 -- 254 |
11 -- 17 |
-20.3624 kcal/mol |
7.43347 kcal/mol |
2.50108 kcal/mol |
237 262@LB@ | |@LB@5'-UUC...AAUAU U UG UU A AAUUU...UUG-3'@LB@ UGGG G GUCGAAGGA G CAG@LB@ |||| | :||:|||:| | |||@LB@ ACCC C UAGUUUCUU C GUC@LB@3'-UUU...GUUUU UG UU ACCG-5'@LB@ | |@LB@ 27 4@LB@@LB@@LB@Energy -10.43 kcal/mol@LB@Hybridization Energy -20.3624 kcal/mol@LB@Unfolding Energy - mRNA 7.43347 kcal/mol@LB@Unfolding Energy - sRNA 2.50108 kcal/mol@LB@@LB@Position - mRNA 238 -- 261@LB@Position - sRNA 5 -- 26@LB@Position Seed - mRNA 248 -- 254@LB@Position Seed - sRNA 11 -- 17@LB@ |
177 |
0.01288 |
0.2504 |
b3455 |
livG |
-10.61 |
0.218983 |
178 -- 198 |
5 -- 24 |
branched-chain amino acid ABC transporter ATPase |
|
_____________177___________________199\n_____________|_____________________|\n5'-AUG...AAAAC__C___GCG____________GCAUG...UCG-3'\n______________GG_GCA___AAAGGAGAGCAG\n______________||_:||___||||:|:|||||\n______________CC_UGU___UUUCUUUUCGUC\n3'-UUU...UUUAC__C___AG_____________ACCG-5'\n_____________|_____________________|\n_____________25____________________4\n |
192 -- 198 |
5 -- 11 |
-19.5574 kcal/mol |
6.51739 kcal/mol |
2.42705 kcal/mol |
177 199@LB@ | |@LB@5'-AUG...AAAAC C GCG GCAUG...UCG-3'@LB@ GG GCA AAAGGAGAGCAG@LB@ || :|| ||||:|:|||||@LB@ CC UGU UUUCUUUUCGUC@LB@3'-UUU...UUUAC C AG ACCG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -10.61 kcal/mol@LB@Hybridization Energy -19.5574 kcal/mol@LB@Unfolding Energy - mRNA 6.51739 kcal/mol@LB@Unfolding Energy - sRNA 2.42705 kcal/mol@LB@@LB@Position - mRNA 178 -- 198@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 5 -- 11@LB@ |
178 |
0.01293 |
0.2504 |
b4258 |
valS |
-13.78 |
0.053235 |
248 -- 266 |
1 -- 21 |
valyl-tRNA synthetase |
|
_____________247___________________267\n_____________|_____________________|\n5'-AUC...UACGA_____U_______________UACUU...AAA-3'\n______________GCA_C_GGGAAAAGCAG_GGC\n______________:||_|_::|||||||||_|||\n______________UGU_G_UUCUUUUCGUC_CCG\n3'-UUU...ACCCC___A_U___________A___-5'\n_____________|____________________|\n_____________22___________________1\n |
257 -- 263 |
5 -- 11 |
-22.196 kcal/mol |
6.90555 kcal/mol |
1.51103 kcal/mol |
247 267@LB@ | |@LB@5'-AUC...UACGA U UACUU...AAA-3'@LB@ GCA C GGGAAAAGCAG GGC@LB@ :|| | ::||||||||| |||@LB@ UGU G UUCUUUUCGUC CCG@LB@3'-UUU...ACCCC A U A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -13.78 kcal/mol@LB@Hybridization Energy -22.196 kcal/mol@LB@Unfolding Energy - mRNA 6.90555 kcal/mol@LB@Unfolding Energy - sRNA 1.51103 kcal/mol@LB@@LB@Position - mRNA 248 -- 266@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 5 -- 11@LB@ |
179 |
0.01303 |
0.2504 |
b1276 |
acnA |
-14.81 |
0.030801 |
184 -- 199 |
7 -- 22 |
aconitate hydratase 1; aconitase A |
|
_____________183______________200\n_____________|________________|\n5'-CUU...ACCCU_U______________UAUGU...GCG-3'\n______________G_CAUUAAGGAGGAGC\n______________|_|||:||:||::|||\n______________C_GUAGUUUCUUUUCG\n3'-UUU...UACCC_U______________UCACCG-5'\n_____________|________________|\n_____________23_______________6\n |
193 -- 199 |
7 -- 13 |
-17.7225 kcal/mol |
2.31939 kcal/mol |
0.590875 kcal/mol |
183 200@LB@ | |@LB@5'-CUU...ACCCU U UAUGU...GCG-3'@LB@ G CAUUAAGGAGGAGC@LB@ | |||:||:||::|||@LB@ C GUAGUUUCUUUUCG@LB@3'-UUU...UACCC U UCACCG-5'@LB@ | |@LB@ 23 6@LB@@LB@@LB@Energy -14.81 kcal/mol@LB@Hybridization Energy -17.7225 kcal/mol@LB@Unfolding Energy - mRNA 2.31939 kcal/mol@LB@Unfolding Energy - sRNA 0.590875 kcal/mol@LB@@LB@Position - mRNA 184 -- 199@LB@Position - sRNA 7 -- 22@LB@Position Seed - mRNA 193 -- 199@LB@Position Seed - sRNA 7 -- 13@LB@ |
180 |
0.01303 |
0.2504 |
b3487 |
yhiI |
-13.61 |
0.058128 |
230 -- 256 |
1 -- 27 |
putative membrane fusion protein (MFP) of efflux pump |
|
_____________229__________________________257\n_____________|____________________________|\n5'-UUU...GCGUG_____U________UUACU_________GGCUA...CGG-3'\n______________GUGGG__UGUCGGG_____GGCGGUGGC\n______________:||||__::||:::_____:||:|||||\n______________UACCC__GUAGUUU_____UCGUCACCG\n3'-UUU...UGUUU_____CU_______CUUU__________-5'\n_____________|___________________________|\n_____________28__________________________1\n |
250 -- 256 |
1 -- 7 |
-27.1902 kcal/mol |
11.0661 kcal/mol |
2.51867 kcal/mol |
229 257@LB@ | |@LB@5'-UUU...GCGUG U UUACU GGCUA...CGG-3'@LB@ GUGGG UGUCGGG GGCGGUGGC@LB@ :|||| ::||::: :||:|||||@LB@ UACCC GUAGUUU UCGUCACCG@LB@3'-UUU...UGUUU CU CUUU -5'@LB@ | |@LB@ 28 1@LB@@LB@@LB@Energy -13.61 kcal/mol@LB@Hybridization Energy -27.1902 kcal/mol@LB@Unfolding Energy - mRNA 11.0661 kcal/mol@LB@Unfolding Energy - sRNA 2.51867 kcal/mol@LB@@LB@Position - mRNA 230 -- 256@LB@Position - sRNA 1 -- 27@LB@Position Seed - mRNA 250 -- 256@LB@Position Seed - sRNA 1 -- 7@LB@ |