| 87 |
0.00283 |
0.1082 |
b0657 |
lnt |
-15.14 |
0.010132 |
15 -- 41 |
15 -- 46 |
apolipoprotein N-acyltransferase |
|
_____________14_______________________________42\n_____________|________________________________|\n5'-AAG...CUAUC______________AU__A_____________CAUCU...UCU-3'\n______________GGUGG__UCUGGUG__GC_GGCAUU___UGGG\n______________|||||__:|||||:__||_:|||||___||||\n______________CCACC__GGACCAU__CG_UCGUAA___ACCC\n3'-UUU...UUCCU_____AA_______GU__A______AAU____AAUAC...UCG-5'\n_____________|________________________________|\n_____________47_______________________________14\n |
20 -- 26 |
33 -- 39 |
-31.43 kcal/mol |
11.7158 kcal/mol |
4.57271 kcal/mol |
14 42@LB@ | |@LB@5'-AAG...CUAUC AU A CAUCU...UCU-3'@LB@ GGUGG UCUGGUG GC GGCAUU UGGG@LB@ ||||| :|||||: || :||||| ||||@LB@ CCACC GGACCAU CG UCGUAA ACCC@LB@3'-UUU...UUCCU AA GU A AAU AAUAC...UCG-5'@LB@ | |@LB@ 47 14@LB@@LB@@LB@Energy -15.14 kcal/mol@LB@Hybridization Energy -31.43 kcal/mol@LB@Unfolding Energy - mRNA 11.7158 kcal/mol@LB@Unfolding Energy - sRNA 4.57271 kcal/mol@LB@@LB@Position - mRNA 15 -- 41@LB@Position - sRNA 15 -- 46@LB@Position Seed - mRNA 20 -- 26@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 102 |
0.003761 |
0.123 |
b0928 |
aspC |
-10.71 |
0.122473 |
105 -- 118 |
20 -- 33 |
aspartate aminotransferase PLP-dependent |
|
_____________104____________119\n_____________|______________|\n5'-CGU...CAAAA_____CU_______CAUCA...UUG-3'\n______________ACAGC__GCGUUUU\n______________|||||__||:||||\n______________UGUCG__CGUAAAA\n3'-UUU...GACCA_____AU_______UACCC...UCG-5'\n_____________|______________|\n_____________34_____________19\n |
112 -- 118 |
20 -- 26 |
-14.5276 kcal/mol |
2.38321 kcal/mol |
1.43447 kcal/mol |
104 119@LB@ | |@LB@5'-CGU...CAAAA CU CAUCA...UUG-3'@LB@ ACAGC GCGUUUU@LB@ ||||| ||:||||@LB@ UGUCG CGUAAAA@LB@3'-UUU...GACCA AU UACCC...UCG-5'@LB@ | |@LB@ 34 19@LB@@LB@@LB@Energy -10.71 kcal/mol@LB@Hybridization Energy -14.5276 kcal/mol@LB@Unfolding Energy - mRNA 2.38321 kcal/mol@LB@Unfolding Energy - sRNA 1.43447 kcal/mol@LB@@LB@Position - mRNA 105 -- 118@LB@Position - sRNA 20 -- 33@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 20 -- 26@LB@ |
| 196 |
0.01135 |
0.1946 |
b1515 |
lsrD |
-9.63 |
0.194390 |
56 -- 86 |
16 -- 44 |
autoinducer 2 import system permease protein |
|
_____________55______________________________87\n_____________|_______________________________|\n5'-AGC...GGGUC_______GC___CGGU__________G____ACGCC...AUA-3'\n______________UGGUUCU__UGG____GCUGGUGUUU_AUGG\n______________||||||:__|||____|||:|::|||_||||\n______________ACCAAGG__ACC____CGAUCGUAAA_UACC\n3'-UUU...CCUCC____________AUGU__________A____CAAUA...UCG-5'\n_____________|_______________________________|\n_____________45______________________________15\n |
56 -- 62 |
38 -- 44 |
-28.9595 kcal/mol |
14.7558 kcal/mol |
4.57147 kcal/mol |
55 87@LB@ | |@LB@5'-AGC...GGGUC GC CGGU G ACGCC...AUA-3'@LB@ UGGUUCU UGG GCUGGUGUUU AUGG@LB@ ||||||: ||| |||:|::||| ||||@LB@ ACCAAGG ACC CGAUCGUAAA UACC@LB@3'-UUU...CCUCC AUGU A CAAUA...UCG-5'@LB@ | |@LB@ 45 15@LB@@LB@@LB@Energy -9.63 kcal/mol@LB@Hybridization Energy -28.9595 kcal/mol@LB@Unfolding Energy - mRNA 14.7558 kcal/mol@LB@Unfolding Energy - sRNA 4.57147 kcal/mol@LB@@LB@Position - mRNA 56 -- 86@LB@Position - sRNA 16 -- 44@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 93 |
0.003115 |
0.1126 |
b2595 |
bamD |
-5.90 |
0.625252 |
19 -- 35 |
31 -- 48 |
BamABCDE complex OM biogenesis lipoprotein |
|
_____________18_________________36\n_____________|__________________|\n5'-CUG...UGACC___U_______C______CCGUU...AUG-3'\n______________GAG_UGGUUUU_GG_ACA\n______________|||_|||||::_||_|||\n______________CUC_ACCAAGG_CC_UGU\n3'-UUU...GAUUC___C_______A__A___CGAUC...UCG-5'\n_____________|__________________|\n_____________49_________________30\n |
23 -- 29 |
38 -- 44 |
-14.3523 kcal/mol |
5.2001 kcal/mol |
3.25694 kcal/mol |
18 36@LB@ | |@LB@5'-CUG...UGACC U C CCGUU...AUG-3'@LB@ GAG UGGUUUU GG ACA@LB@ ||| |||||:: || |||@LB@ CUC ACCAAGG CC UGU@LB@3'-UUU...GAUUC C A A CGAUC...UCG-5'@LB@ | |@LB@ 49 30@LB@@LB@@LB@Energy -5.90 kcal/mol@LB@Hybridization Energy -14.3523 kcal/mol@LB@Unfolding Energy - mRNA 5.2001 kcal/mol@LB@Unfolding Energy - sRNA 3.25694 kcal/mol@LB@@LB@Position - mRNA 19 -- 35@LB@Position - sRNA 31 -- 48@LB@Position Seed - mRNA 23 -- 29@LB@Position Seed - sRNA 38 -- 44@LB@ |
| 191 |
0.01094 |
0.1919 |
b3554 |
yiaF |
-11.44 |
0.087025 |
256 -- 281 |
6 -- 37 |
barrier effect co-colonization resistance factor; DUF3053 family lipoprotein |
|
_____________255______________________________282\n_____________|________________________________|\n5'-AAU...AUUAA_____________CUGA_______________GAUAA...AGC-3'\n______________UGGU__AGUUAGC_____GUGGGU___GUUUU\n______________||||__||:||||_____:|||||___|||||\n______________ACCA__UCGAUCG_____UACCCA___CAAAA\n3'-UUU...CAAGG____UG_______UAAAA______AUA_____AGUCG-5'\n_____________|________________________________|\n_____________38_______________________________5\n |
260 -- 266 |
25 -- 31 |
-21.639 kcal/mol |
7.5014 kcal/mol |
2.70019 kcal/mol |
255 282@LB@ | |@LB@5'-AAU...AUUAA CUGA GAUAA...AGC-3'@LB@ UGGU AGUUAGC GUGGGU GUUUU@LB@ |||| ||:|||| :||||| |||||@LB@ ACCA UCGAUCG UACCCA CAAAA@LB@3'-UUU...CAAGG UG UAAAA AUA AGUCG-5'@LB@ | |@LB@ 38 5@LB@@LB@@LB@Energy -11.44 kcal/mol@LB@Hybridization Energy -21.639 kcal/mol@LB@Unfolding Energy - mRNA 7.5014 kcal/mol@LB@Unfolding Energy - sRNA 2.70019 kcal/mol@LB@@LB@Position - mRNA 256 -- 281@LB@Position - sRNA 6 -- 37@LB@Position Seed - mRNA 260 -- 266@LB@Position Seed - sRNA 25 -- 31@LB@ |
| 86 |
0.002806 |
0.1082 |
b1107 |
nagZ |
-13.13 |
0.035629 |
98 -- 119 |
25 -- 47 |
beta N-acetyl-glucosaminidase |
|
_____________97______________________120\n_____________|_______________________|\n5'-AUU...AAGCA_________GA_____C______GACAA...CGC-3'\n______________GGGUGGUUU___GUAC_GCUGGC\n______________:|||||||:___||||_|||:||\n______________UCCACCAAG___CAUG_CGAUCG\n3'-UUU...AUUCC_________GAC____U______UAAAA...UCG-5'\n_____________|_______________________|\n_____________48______________________24\n |
100 -- 106 |
39 -- 45 |
-29.3426 kcal/mol |
11.6523 kcal/mol |
4.55753 kcal/mol |
97 120@LB@ | |@LB@5'-AUU...AAGCA GA C GACAA...CGC-3'@LB@ GGGUGGUUU GUAC GCUGGC@LB@ :|||||||: |||| |||:||@LB@ UCCACCAAG CAUG CGAUCG@LB@3'-UUU...AUUCC GAC U UAAAA...UCG-5'@LB@ | |@LB@ 48 24@LB@@LB@@LB@Energy -13.13 kcal/mol@LB@Hybridization Energy -29.3426 kcal/mol@LB@Unfolding Energy - mRNA 11.6523 kcal/mol@LB@Unfolding Energy - sRNA 4.55753 kcal/mol@LB@@LB@Position - mRNA 98 -- 119@LB@Position - sRNA 25 -- 47@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 119 |
0.005024 |
0.1407 |
b2342 |
fadI |
-9.59 |
0.197573 |
199 -- 214 |
6 -- 21 |
beta-ketoacyl-CoA thiolase anaerobic subunit |
|
_____________198______________215\n_____________|________________|\n5'-UCC...GAGUG________CAG_____ACCGC...AUG-3'\n______________UUAUGGGU___GUUUU\n______________||||||||___|||||\n______________AAUACCCA___CAAAA\n3'-UUU...CGUAA________AUA_____AGUCG-5'\n_____________|________________|\n_____________22_______________5\n |
200 -- 206 |
14 -- 20 |
-13.0434 kcal/mol |
3.24348 kcal/mol |
0.208077 kcal/mol |
198 215@LB@ | |@LB@5'-UCC...GAGUG CAG ACCGC...AUG-3'@LB@ UUAUGGGU GUUUU@LB@ |||||||| |||||@LB@ AAUACCCA CAAAA@LB@3'-UUU...CGUAA AUA AGUCG-5'@LB@ | |@LB@ 22 5@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -13.0434 kcal/mol@LB@Unfolding Energy - mRNA 3.24348 kcal/mol@LB@Unfolding Energy - sRNA 0.208077 kcal/mol@LB@@LB@Position - mRNA 199 -- 214@LB@Position - sRNA 6 -- 21@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 101 |
0.003756 |
0.123 |
b2972 |
pppA |
-13.47 |
0.029286 |
211 -- 222 |
1 -- 12 |
bifunctional prepilin leader peptidase/ methylase |
|
_____________210__________223\n_____________|____________|\n5'-UAA...UUUUG____________AAUAC...GGC-3'\n______________AUGUUUUUCAGC\n______________||||||||||||\n______________UACAAAAAGUCG\n3'-UUU...CCCAA____________-5'\n_____________|___________|\n_____________13__________1\n |
216 -- 222 |
1 -- 7 |
-17.018 kcal/mol |
2.64154 kcal/mol |
0.904394 kcal/mol |
210 223@LB@ | |@LB@5'-UAA...UUUUG AAUAC...GGC-3'@LB@ AUGUUUUUCAGC@LB@ ||||||||||||@LB@ UACAAAAAGUCG@LB@3'-UUU...CCCAA -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -13.47 kcal/mol@LB@Hybridization Energy -17.018 kcal/mol@LB@Unfolding Energy - mRNA 2.64154 kcal/mol@LB@Unfolding Energy - sRNA 0.904394 kcal/mol@LB@@LB@Position - mRNA 211 -- 222@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 216 -- 222@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 200 |
0.01185 |
0.1975 |
b0025 |
ribF |
-6.09 |
0.598433 |
35 -- 41 |
28 -- 34 |
bifunctional riboflavin kinase/FAD synthetase |
|
_____________34______42\n_____________|_______|\n5'-UGG...GUGAA_______UUUCC...GCG-3'\n______________UACAGCU\n______________|||||||\n______________AUGUCGA\n3'-UUU...GGACC_______UCGUA...UCG-5'\n_____________|_______|\n_____________35______27\n |
35 -- 41 |
28 -- 34 |
-8.9914 kcal/mol |
1.72675 kcal/mol |
1.17027 kcal/mol |
34 42@LB@ | |@LB@5'-UGG...GUGAA UUUCC...GCG-3'@LB@ UACAGCU@LB@ |||||||@LB@ AUGUCGA@LB@3'-UUU...GGACC UCGUA...UCG-5'@LB@ | |@LB@ 35 27@LB@@LB@@LB@Energy -6.09 kcal/mol@LB@Hybridization Energy -8.9914 kcal/mol@LB@Unfolding Energy - mRNA 1.72675 kcal/mol@LB@Unfolding Energy - sRNA 1.17027 kcal/mol@LB@@LB@Position - mRNA 35 -- 41@LB@Position - sRNA 28 -- 34@LB@Position Seed - mRNA 35 -- 41@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 137 |
0.006165 |
0.1512 |
b1024 |
pgaA |
-6.60 |
0.530802 |
267 -- 274 |
1 -- 8 |
biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1 6-N-acetyl-D-glucosamine export protein |
|
_____________266______275\n_____________|________|\n5'-CUC...CCGCA________AGCGA...CUG-3'\n______________UUUUUAGC\n______________||||:|||\n______________AAAAGUCG\n3'-UUU...AUACA________-5'\n_____________|_______|\n_____________9_______1\n |
268 -- 274 |
1 -- 7 |
-8.19691 kcal/mol |
0.802454 kcal/mol |
0.799201 kcal/mol |
266 275@LB@ | |@LB@5'-CUC...CCGCA AGCGA...CUG-3'@LB@ UUUUUAGC@LB@ ||||:|||@LB@ AAAAGUCG@LB@3'-UUU...AUACA -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -6.60 kcal/mol@LB@Hybridization Energy -8.19691 kcal/mol@LB@Unfolding Energy - mRNA 0.802454 kcal/mol@LB@Unfolding Energy - sRNA 0.799201 kcal/mol@LB@@LB@Position - mRNA 267 -- 274@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 268 -- 274@LB@Position Seed - sRNA 1 -- 7@LB@ |
