| 5 |
6.68e-06 |
0.00395 |
b1918 |
yecS |
-16.73 |
0.003069 |
259 -- 299 |
1 -- 36 |
ABC family putative inner membrane permease |
|
_____________258________________________________________300\n_____________|__________________________________________|\n5'-GGC...GGCUG______C_______ACUCAG___C__C_GC____________U-3'\n______________GGUAUA_GCU_GCA______UAU_GG_G__AUGUUUUUUGGC\n______________||||:|_|||_|||______|||_||_|__||||||||::||\n______________CCAUGU_CGA_CGU______AUA_CC_C__UACAAAAAGUCG\n3'-UUU...AAGGA__________U___AAA___________AA____________-5'\n_____________|_________________________________________|\n_____________37________________________________________1\n |
293 -- 299 |
1 -- 7 |
-28.0078 kcal/mol |
9.77847 kcal/mol |
1.49509 kcal/mol |
258 300@LB@ | |@LB@5'-GGC...GGCUG C ACUCAG C C GC U-3'@LB@ GGUAUA GCU GCA UAU GG G AUGUUUUUUGGC@LB@ ||||:| ||| ||| ||| || | ||||||||::||@LB@ CCAUGU CGA CGU AUA CC C UACAAAAAGUCG@LB@3'-UUU...AAGGA U AAA AA -5'@LB@ | |@LB@ 37 1@LB@@LB@@LB@Energy -16.73 kcal/mol@LB@Hybridization Energy -28.0078 kcal/mol@LB@Unfolding Energy - mRNA 9.77847 kcal/mol@LB@Unfolding Energy - sRNA 1.49509 kcal/mol@LB@@LB@Position - mRNA 259 -- 299@LB@Position - sRNA 1 -- 36@LB@Position Seed - mRNA 293 -- 299@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 162 |
0.008285 |
0.1719 |
b3671 |
ilvB |
-15.19 |
0.009769 |
264 -- 284 |
22 -- 41 |
acetolactate synthase 2 large subunit |
|
_____________263___________________285\n_____________|_____________________|\n5'-CUA...UUCAU_______A_____AG______AAGAU...GCA-3'\n______________UUCCUGG_ACAGC__GGCAUU\n______________|||||||_|||||__:|||||\n______________AAGGACC_UGUCG__UCGUAA\n3'-UUU...CCACC_______A_____A_______AAUAC...UCG-5'\n_____________|_____________________|\n_____________42____________________21\n |
264 -- 270 |
35 -- 41 |
-26.898 kcal/mol |
7.14717 kcal/mol |
4.5564 kcal/mol |
263 285@LB@ | |@LB@5'-CUA...UUCAU A AG AAGAU...GCA-3'@LB@ UUCCUGG ACAGC GGCAUU@LB@ ||||||| ||||| :|||||@LB@ AAGGACC UGUCG UCGUAA@LB@3'-UUU...CCACC A A AAUAC...UCG-5'@LB@ | |@LB@ 42 21@LB@@LB@@LB@Energy -15.19 kcal/mol@LB@Hybridization Energy -26.898 kcal/mol@LB@Unfolding Energy - mRNA 7.14717 kcal/mol@LB@Unfolding Energy - sRNA 4.5564 kcal/mol@LB@@LB@Position - mRNA 264 -- 284@LB@Position - sRNA 22 -- 41@LB@Position Seed - mRNA 264 -- 270@LB@Position Seed - sRNA 35 -- 41@LB@ |
| 199 |
0.0118 |
0.1975 |
b0077 |
ilvI |
-11.98 |
0.066447 |
6 -- 27 |
1 -- 30 |
acetolactate synthase 3 large subunit |
|
_____________5______________________________28\n_____________|______________________________|\n______5'-AAAUU_______AG_______A_____________CGAUU...UUU-3'\n______________GCU_GUA__UUGUGGG________UUCAGC\n______________|||_|:|__||:||||________||||||\n______________CGA_CGU__AAUACCC________AAGUCG\n3'-UUU...CAUGU___U___AA_______AAUACAAA______-5'\n_____________|_____________________________|\n_____________31____________________________1\n |
14 -- 20 |
15 -- 21 |
-19.3299 kcal/mol |
5.86615 kcal/mol |
1.48556 kcal/mol |
5 28@LB@ | |@LB@ 5'-AAAUU AG A CGAUU...UUU-3'@LB@ GCU GUA UUGUGGG UUCAGC@LB@ ||| |:| ||:|||| ||||||@LB@ CGA CGU AAUACCC AAGUCG@LB@3'-UUU...CAUGU U AA AAUACAAA -5'@LB@ | |@LB@ 31 1@LB@@LB@@LB@Energy -11.98 kcal/mol@LB@Hybridization Energy -19.3299 kcal/mol@LB@Unfolding Energy - mRNA 5.86615 kcal/mol@LB@Unfolding Energy - sRNA 1.48556 kcal/mol@LB@@LB@Position - mRNA 6 -- 27@LB@Position - sRNA 1 -- 30@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 55 |
0.001331 |
0.08097 |
b2742 |
nlpD |
-12.02 |
0.064935 |
253 -- 272 |
24 -- 44 |
activator of AmiC murein hydrolase activity lipoprotein |
|
_____________252___________________273\n_____________|_____________________|\n5'-UAU...GUCAC_______GC____________GGCUG...CGG-3'\n______________UGGUUUC___UAUGGCUGGCA\n______________|||||:|___||::|||:|||\n______________ACCAAGG___AUGUCGAUCGU\n3'-UUU...CCUCC_______ACC___________AAAAU...UCG-5'\n_____________|_____________________|\n_____________45____________________23\n |
266 -- 272 |
24 -- 30 |
-23.7485 kcal/mol |
7.16759 kcal/mol |
4.55788 kcal/mol |
252 273@LB@ | |@LB@5'-UAU...GUCAC GC GGCUG...CGG-3'@LB@ UGGUUUC UAUGGCUGGCA@LB@ |||||:| ||::|||:|||@LB@ ACCAAGG AUGUCGAUCGU@LB@3'-UUU...CCUCC ACC AAAAU...UCG-5'@LB@ | |@LB@ 45 23@LB@@LB@@LB@Energy -12.02 kcal/mol@LB@Hybridization Energy -23.7485 kcal/mol@LB@Unfolding Energy - mRNA 7.16759 kcal/mol@LB@Unfolding Energy - sRNA 4.55788 kcal/mol@LB@@LB@Position - mRNA 253 -- 272@LB@Position - sRNA 24 -- 44@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 170 |
0.009245 |
0.1803 |
b3205 |
yhbJ |
-9.78 |
0.183109 |
251 -- 276 |
13 -- 39 |
adaptor protein for GlmZ/GlmY sRNA decay glucosamine-6-phosphate-regulated; NTPase |
|
_____________250__________________________277\n_____________|____________________________|\n5'-CGG...GUCGC____C__________AAGA_________UUUAC...CCG-3'\n______________CCUG_GUGC_GCUGG_____UAUGGGUU\n______________||||_||:|_|||:|_____||||||||\n______________GGAC_CAUG_CGAUC_____AUACCCAA\n3'-UUU...ACCAA_________U_____GUAAA________UACAA...UCG-5'\n_____________|____________________________|\n_____________40___________________________12\n |
270 -- 276 |
13 -- 19 |
-27.4258 kcal/mol |
13.0784 kcal/mol |
4.56849 kcal/mol |
250 277@LB@ | |@LB@5'-CGG...GUCGC C AAGA UUUAC...CCG-3'@LB@ CCUG GUGC GCUGG UAUGGGUU@LB@ |||| ||:| |||:| ||||||||@LB@ GGAC CAUG CGAUC AUACCCAA@LB@3'-UUU...ACCAA U GUAAA UACAA...UCG-5'@LB@ | |@LB@ 40 12@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -27.4258 kcal/mol@LB@Unfolding Energy - mRNA 13.0784 kcal/mol@LB@Unfolding Energy - sRNA 4.56849 kcal/mol@LB@@LB@Position - mRNA 251 -- 276@LB@Position - sRNA 13 -- 39@LB@Position Seed - mRNA 270 -- 276@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 152 |
0.007594 |
0.1679 |
b3992 |
thiF |
-12.60 |
0.047865 |
3 -- 22 |
24 -- 47 |
adenylyltransferase modifies ThiS C-terminus |
|
_____________2________________________23\n_____________|________________________|\n_________5'-GC_____________A__________CGGCA...UUA-3'\n______________AGG_GG___CUGG_ACAGCUGGCA\n______________|||_||___||||_||||||:|||\n______________UCC_CC___GACC_UGUCGAUCGU\n3'-UUU...AUUCC___A__AAG____A__________AAAAU...UCG-5'\n_____________|________________________|\n_____________48_______________________23\n |
16 -- 22 |
24 -- 30 |
-27.3128 kcal/mol |
10.1529 kcal/mol |
4.55893 kcal/mol |
2 23@LB@ | |@LB@ 5'-GC A CGGCA...UUA-3'@LB@ AGG GG CUGG ACAGCUGGCA@LB@ ||| || |||| ||||||:|||@LB@ UCC CC GACC UGUCGAUCGU@LB@3'-UUU...AUUCC A AAG A AAAAU...UCG-5'@LB@ | |@LB@ 48 23@LB@@LB@@LB@Energy -12.60 kcal/mol@LB@Hybridization Energy -27.3128 kcal/mol@LB@Unfolding Energy - mRNA 10.1529 kcal/mol@LB@Unfolding Energy - sRNA 4.55893 kcal/mol@LB@@LB@Position - mRNA 3 -- 22@LB@Position - sRNA 24 -- 47@LB@Position Seed - mRNA 16 -- 22@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 166 |
0.008687 |
0.1759 |
b3210 |
arcB |
-6.83 |
0.499810 |
260 -- 284 |
24 -- 46 |
aerobic respiration control sensor histidine protein kinase cognate to two-component response regulators ArcA and RssB |
|
_____________259_______________________285\n_____________|_________________________|\n5'-UGC...GGUCU____C_C____CAAUGUU_______CUGGC...UUC-3'\n______________GGUG_G_UUCU_______GCUGGCG\n______________||||_|_|||:_______|||:||:\n______________CCAC_C_AAGG_______CGAUCGU\n3'-UUU...UUCCU___________ACCAUGU_______AAAAU...UCG-5'\n_____________|_________________________|\n_____________47________________________23\n |
278 -- 284 |
24 -- 30 |
-17.917 kcal/mol |
6.53164 kcal/mol |
4.55813 kcal/mol |
259 285@LB@ | |@LB@5'-UGC...GGUCU C C CAAUGUU CUGGC...UUC-3'@LB@ GGUG G UUCU GCUGGCG@LB@ |||| | |||: |||:||:@LB@ CCAC C AAGG CGAUCGU@LB@3'-UUU...UUCCU ACCAUGU AAAAU...UCG-5'@LB@ | |@LB@ 47 23@LB@@LB@@LB@Energy -6.83 kcal/mol@LB@Hybridization Energy -17.917 kcal/mol@LB@Unfolding Energy - mRNA 6.53164 kcal/mol@LB@Unfolding Energy - sRNA 4.55813 kcal/mol@LB@@LB@Position - mRNA 260 -- 284@LB@Position - sRNA 24 -- 46@LB@Position Seed - mRNA 278 -- 284@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 158 |
0.007987 |
0.1694 |
b0756 |
galM |
-12.34 |
0.055034 |
97 -- 122 |
25 -- 48 |
aldose 1-epimerase; type-1 mutarotase; galactose mutarotase |
|
_____________96_________________________123\n_____________|__________________________|\n5'-CUG...CGGAA___C____G____CC_______A___UGUCG...GGG-3'\n______________GAG_UGGU_CCUG__GUACAGC_AGC\n______________|||_||||_||||__|||||||_|||\n______________CUC_ACCA_GGAC__CAUGUCG_UCG\n3'-UUU...GAUUC___C____A_____________A___UAAAA...UCG-5'\n_____________|__________________________|\n_____________49_________________________24\n |
112 -- 118 |
29 -- 35 |
-29.4823 kcal/mol |
12.5844 kcal/mol |
4.55759 kcal/mol |
96 123@LB@ | |@LB@5'-CUG...CGGAA C G CC A UGUCG...GGG-3'@LB@ GAG UGGU CCUG GUACAGC AGC@LB@ ||| |||| |||| ||||||| |||@LB@ CUC ACCA GGAC CAUGUCG UCG@LB@3'-UUU...GAUUC C A A UAAAA...UCG-5'@LB@ | |@LB@ 49 24@LB@@LB@@LB@Energy -12.34 kcal/mol@LB@Hybridization Energy -29.4823 kcal/mol@LB@Unfolding Energy - mRNA 12.5844 kcal/mol@LB@Unfolding Energy - sRNA 4.55759 kcal/mol@LB@@LB@Position - mRNA 97 -- 122@LB@Position - sRNA 25 -- 48@LB@Position Seed - mRNA 112 -- 118@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 144 |
0.006813 |
0.158 |
b0111 |
ampE |
-6.38 |
0.559697 |
294 -- 300 |
1 -- 7 |
ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation |
|
_____________293____300\n_____________|______|\n5'-CUU...CGUUC_______-3'\n______________UUUCGGC\n______________||||:||\n______________AAAGUCG\n3'-UUU...UACAA_______-5'\n_____________|______|\n_____________8______1\n |
294 -- 300 |
1 -- 7 |
-7.27697 kcal/mol |
0.0992979 kcal/mol |
0.796773 kcal/mol |
293 300@LB@ | |@LB@5'-CUU...CGUUC -3'@LB@ UUUCGGC@LB@ ||||:||@LB@ AAAGUCG@LB@3'-UUU...UACAA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -6.38 kcal/mol@LB@Hybridization Energy -7.27697 kcal/mol@LB@Unfolding Energy - mRNA 0.0992979 kcal/mol@LB@Unfolding Energy - sRNA 0.796773 kcal/mol@LB@@LB@Position - mRNA 294 -- 300@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 136 |
0.005909 |
0.146 |
b1291 |
sapD |
-11.34 |
0.091029 |
118 -- 151 |
12 -- 36 |
antimicrobial peptide ABC transporter ATPase |
|
_____________117________________________________152\n_____________|__________________________________|\n5'-AUC...UGCCA________AAUUAUGAU______G____U_____ACCUC...GUG-3'\n______________GGUGCGGC_________UAGCGU_UUGU_GGUUA\n______________|||:|:||_________||||:|_||:|_|||||\n______________CCAUGUCG_________AUCGUA_AAUA_CCAAU\n3'-UUU...AAGGA_______________________A____C_____ACAAA...UCG-5'\n_____________|__________________________________|\n_____________37_________________________________11\n |
119 -- 125 |
29 -- 35 |
-24.3443 kcal/mol |
11.5428 kcal/mol |
1.45699 kcal/mol |
117 152@LB@ | |@LB@5'-AUC...UGCCA AAUUAUGAU G U ACCUC...GUG-3'@LB@ GGUGCGGC UAGCGU UUGU GGUUA@LB@ |||:|:|| ||||:| ||:| |||||@LB@ CCAUGUCG AUCGUA AAUA CCAAU@LB@3'-UUU...AAGGA A C ACAAA...UCG-5'@LB@ | |@LB@ 37 11@LB@@LB@@LB@Energy -11.34 kcal/mol@LB@Hybridization Energy -24.3443 kcal/mol@LB@Unfolding Energy - mRNA 11.5428 kcal/mol@LB@Unfolding Energy - sRNA 1.45699 kcal/mol@LB@@LB@Position - mRNA 118 -- 151@LB@Position - sRNA 12 -- 36@LB@Position Seed - mRNA 119 -- 125@LB@Position Seed - sRNA 29 -- 35@LB@ |
