| 80 |
0.002475 |
0.104 |
b2468 |
aegA |
-11.19 |
0.098238 |
223 -- 245 |
11 -- 33 |
putative oxidoreductase FeS binding subunit/NAD/FAD-binding subunit |
|
_____________222_____________________246\n_____________|_______________________|\n5'-UCU...GGCCA_____C____AUGUC________CAUGC...UGA-3'\n______________ACAGU_AGCA_____UGGGUUGU\n______________||||:_||||_____||||||:|\n______________UGUCG_UCGU_____ACCCAAUA\n3'-UUU...GACCA_____A____AAAAU________CAAAA...UCG-5'\n_____________|_______________________|\n_____________34______________________10\n |
239 -- 245 |
11 -- 17 |
-21.0997 kcal/mol |
8.44489 kcal/mol |
1.46958 kcal/mol |
222 246@LB@ | |@LB@5'-UCU...GGCCA C AUGUC CAUGC...UGA-3'@LB@ ACAGU AGCA UGGGUUGU@LB@ ||||: |||| ||||||:|@LB@ UGUCG UCGU ACCCAAUA@LB@3'-UUU...GACCA A AAAAU CAAAA...UCG-5'@LB@ | |@LB@ 34 10@LB@@LB@@LB@Energy -11.19 kcal/mol@LB@Hybridization Energy -21.0997 kcal/mol@LB@Unfolding Energy - mRNA 8.44489 kcal/mol@LB@Unfolding Energy - sRNA 1.46958 kcal/mol@LB@@LB@Position - mRNA 223 -- 245@LB@Position - sRNA 11 -- 33@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 88 |
0.002837 |
0.1082 |
b4377 |
yjjU |
-10.09 |
0.160689 |
120 -- 144 |
1 -- 33 |
putative patatin-like family phospholipase |
|
_____________119________________________________145\n_____________|__________________________________|\n5'-AGG...GUCCA____A___________C_________________GAAUA...GAC-3'\n______________GCGG_CUGGC_UUUUG_GG________UUUUAGC\n______________:|:|_||:||_||||:_||________|||:|||\n______________UGUC_GAUCG_AAAAU_CC________AAAGUCG\n3'-UUU...GACCA__________U_____A__CAAUACAA_______-5'\n_____________|_________________________________|\n_____________34________________________________1\n |
138 -- 144 |
1 -- 7 |
-20.956 kcal/mol |
9.37145 kcal/mol |
1.49313 kcal/mol |
119 145@LB@ | |@LB@5'-AGG...GUCCA A C GAAUA...GAC-3'@LB@ GCGG CUGGC UUUUG GG UUUUAGC@LB@ :|:| ||:|| ||||: || |||:|||@LB@ UGUC GAUCG AAAAU CC AAAGUCG@LB@3'-UUU...GACCA U A CAAUACAA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -10.09 kcal/mol@LB@Hybridization Energy -20.956 kcal/mol@LB@Unfolding Energy - mRNA 9.37145 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 120 -- 144@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 138 -- 144@LB@Position Seed - sRNA 1 -- 7@LB@ |
| 131 |
0.005571 |
0.1429 |
b3102 |
yqjG |
-9.67 |
0.191738 |
57 -- 77 |
24 -- 46 |
putative S-transferase |
|
_____________56_______________________78\n_____________|________________________|\n5'-GCA...UUUCU__C__A______CU__________AUUAC...GGC-3'\n______________GG_GG_UUCCUG_____GCUGGCA\n______________||_||_||||||_____|||:|||\n______________CC_CC_AAGGAC_____CGAUCGU\n3'-UUU...UUCCU__A_________CAUGU_______AAAAU...UCG-5'\n_____________|________________________|\n_____________47_______________________23\n |
71 -- 77 |
24 -- 30 |
-24.338 kcal/mol |
10.1138 kcal/mol |
4.55813 kcal/mol |
56 78@LB@ | |@LB@5'-GCA...UUUCU C A CU AUUAC...GGC-3'@LB@ GG GG UUCCUG GCUGGCA@LB@ || || |||||| |||:|||@LB@ CC CC AAGGAC CGAUCGU@LB@3'-UUU...UUCCU A CAUGU AAAAU...UCG-5'@LB@ | |@LB@ 47 23@LB@@LB@@LB@Energy -9.67 kcal/mol@LB@Hybridization Energy -24.338 kcal/mol@LB@Unfolding Energy - mRNA 10.1138 kcal/mol@LB@Unfolding Energy - sRNA 4.55813 kcal/mol@LB@@LB@Position - mRNA 57 -- 77@LB@Position - sRNA 24 -- 46@LB@Position Seed - mRNA 71 -- 77@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 81 |
0.002689 |
0.1082 |
b1498 |
ydeN |
-15.88 |
0.005981 |
253 -- 275 |
21 -- 44 |
putative Ser-type periplasmic non-aryl sulfatase |
b3678 b3801 |
_____________252______________________276\n_____________|________________________|\n5'-AUU...GAUAC___CA___________________GCUGC...UAA-3'\n______________UGG__UCUGGUAUGGCU_GCAUUU\n______________|||__:||||||::|||_||||||\n______________ACC__GGACCAUGUCGA_CGUAAA\n3'-UUU...CCUCC___AA____________U______AUACC...UCG-5'\n_____________|________________________|\n_____________45_______________________20\n |
263 -- 269 |
28 -- 34 |
-26.8614 kcal/mol |
6.42389 kcal/mol |
4.55918 kcal/mol |
252 276@LB@ | |@LB@5'-AUU...GAUAC CA GCUGC...UAA-3'@LB@ UGG UCUGGUAUGGCU GCAUUU@LB@ ||| :||||||::||| ||||||@LB@ ACC GGACCAUGUCGA CGUAAA@LB@3'-UUU...CCUCC AA U AUACC...UCG-5'@LB@ | |@LB@ 45 20@LB@@LB@@LB@Energy -15.88 kcal/mol@LB@Hybridization Energy -26.8614 kcal/mol@LB@Unfolding Energy - mRNA 6.42389 kcal/mol@LB@Unfolding Energy - sRNA 4.55918 kcal/mol@LB@@LB@Position - mRNA 253 -- 275@LB@Position - sRNA 21 -- 44@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 28 -- 34@LB@ |
| 114 |
0.004808 |
0.1404 |
b2372 |
yfdV |
-9.14 |
0.236047 |
240 -- 266 |
1 -- 35 |
putative transporter |
|
_____________239____________________________________267\n_____________|______________________________________|\n5'-UUC...UUAUC___AU__U______________________________GGCAG...CUC-3'\n______________GUA__CA_GCU_GU______UGGGUUAU____UUUAGC\n______________|||__||_|||_|:______||||||||____||:|||\n______________CAU__GU_CGA_CG______ACCCAAUA____AAGUCG\n3'-UUU...AGGAC___________U__UAAAAU________CAAA______-5'\n_____________|_____________________________________|\n_____________36____________________________________1\n |
254 -- 260 |
11 -- 17 |
-17.7969 kcal/mol |
7.16419 kcal/mol |
1.49508 kcal/mol |
239 267@LB@ | |@LB@5'-UUC...UUAUC AU U GGCAG...CUC-3'@LB@ GUA CA GCU GU UGGGUUAU UUUAGC@LB@ ||| || ||| |: |||||||| ||:|||@LB@ CAU GU CGA CG ACCCAAUA AAGUCG@LB@3'-UUU...AGGAC U UAAAAU CAAA -5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -17.7969 kcal/mol@LB@Unfolding Energy - mRNA 7.16419 kcal/mol@LB@Unfolding Energy - sRNA 1.49508 kcal/mol@LB@@LB@Position - mRNA 240 -- 266@LB@Position - sRNA 1 -- 35@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 11 -- 17@LB@ |
| 45 |
0.001037 |
0.07744 |
b0857 |
potI |
-11.49 |
0.084883 |
37 -- 88 |
3 -- 46 |
putrescine ABC transporter permease |
|
_____________36______________________________________________________89\n_____________|_______________________________________________________|\n5'-CCG...UGCUC_________C________AUCAUGAUCGGGC____GC_____CAAGA________AUAAC...AUU-3'\n______________GGUGG__CC_GG_ACAGC_____________GCGU__UAUGG_____GUUUUUCA\n______________|||||__||_||_|||||_____________||:|__|||||_____||||||||\n______________CCACC__GG_CC_UGUCG_____________CGUA__AUACC_____CAAAAAGU\n3'-UUU...UUCCU_____AA__A__A_____AU_______________AA_____CAAUA________CG-5'\n_____________|_______________________________________________________|\n_____________47______________________________________________________2\n |
82 -- 88 |
3 -- 9 |
-33.7321 kcal/mol |
17.6344 kcal/mol |
4.60931 kcal/mol |
36 89@LB@ | |@LB@5'-CCG...UGCUC C AUCAUGAUCGGGC GC CAAGA AUAAC...AUU-3'@LB@ GGUGG CC GG ACAGC GCGU UAUGG GUUUUUCA@LB@ ||||| || || ||||| ||:| ||||| ||||||||@LB@ CCACC GG CC UGUCG CGUA AUACC CAAAAAGU@LB@3'-UUU...UUCCU AA A A AU AA CAAUA CG-5'@LB@ | |@LB@ 47 2@LB@@LB@@LB@Energy -11.49 kcal/mol@LB@Hybridization Energy -33.7321 kcal/mol@LB@Unfolding Energy - mRNA 17.6344 kcal/mol@LB@Unfolding Energy - sRNA 4.60931 kcal/mol@LB@@LB@Position - mRNA 37 -- 88@LB@Position - sRNA 3 -- 46@LB@Position Seed - mRNA 82 -- 88@LB@Position Seed - sRNA 3 -- 9@LB@ |
| 143 |
0.00681 |
0.158 |
b2418 |
pdxK |
-15.34 |
0.008827 |
271 -- 292 |
15 -- 47 |
pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase |
|
_____________270_______________________________293\n_____________|_________________________________|\n5'-CAU...GUCGC_________________________________CAACAGCA-3'\n______________AGGUGGUUU_____ACGGC_AGC_____GUGGG\n______________||||||||:_____||:||_|||_____:||||\n______________UCCACCAAG_____UGUCG_UCG_____UACCC\n3'-UUU...AUUCC_________GACCA_____A___UAAAA_____AAUAC...UCG-5'\n_____________|_________________________________|\n_____________48________________________________14\n |
273 -- 279 |
39 -- 45 |
-26.4553 kcal/mol |
6.54205 kcal/mol |
4.57348 kcal/mol |
270 293@LB@ | |@LB@5'-CAU...GUCGC CAACAGCA-3'@LB@ AGGUGGUUU ACGGC AGC GUGGG@LB@ ||||||||: ||:|| ||| :||||@LB@ UCCACCAAG UGUCG UCG UACCC@LB@3'-UUU...AUUCC GACCA A UAAAA AAUAC...UCG-5'@LB@ | |@LB@ 48 14@LB@@LB@@LB@Energy -15.34 kcal/mol@LB@Hybridization Energy -26.4553 kcal/mol@LB@Unfolding Energy - mRNA 6.54205 kcal/mol@LB@Unfolding Energy - sRNA 4.57348 kcal/mol@LB@@LB@Position - mRNA 271 -- 292@LB@Position - sRNA 15 -- 47@LB@Position Seed - mRNA 273 -- 279@LB@Position Seed - sRNA 39 -- 45@LB@ |
| 120 |
0.005024 |
0.1407 |
b2564 |
pdxJ |
-10.23 |
0.151404 |
275 -- 296 |
21 -- 43 |
pyridoxine 5'-phosphate synthase |
|
_____________274_____________________297\n_____________|_______________________|\n5'-AAA...UACCC__A___________GCC______AUUG-3'\n______________GG_UCC_GGUGCAG___GCGUUU\n______________||_|||_|||:|||___||:|||\n______________CC_AGG_CCAUGUC___CGUAAA\n3'-UUU...CUCCA__A___A_______GAU______AUACC...UCG-5'\n_____________|_______________________|\n_____________44______________________20\n |
281 -- 287 |
30 -- 36 |
-24.4803 kcal/mol |
9.69131 kcal/mol |
4.55861 kcal/mol |
274 297@LB@ | |@LB@5'-AAA...UACCC A GCC AUUG-3'@LB@ GG UCC GGUGCAG GCGUUU@LB@ || ||| |||:||| ||:|||@LB@ CC AGG CCAUGUC CGUAAA@LB@3'-UUU...CUCCA A A GAU AUACC...UCG-5'@LB@ | |@LB@ 44 20@LB@@LB@@LB@Energy -10.23 kcal/mol@LB@Hybridization Energy -24.4803 kcal/mol@LB@Unfolding Energy - mRNA 9.69131 kcal/mol@LB@Unfolding Energy - sRNA 4.55861 kcal/mol@LB@@LB@Position - mRNA 275 -- 296@LB@Position - sRNA 21 -- 43@LB@Position Seed - mRNA 281 -- 287@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 172 |
0.009254 |
0.1803 |
b1676 |
pykF |
-8.82 |
0.265733 |
268 -- 283 |
23 -- 40 |
pyruvate kinase I |
|
_____________267________________284\n_____________|__________________|\n5'-GGA...UAAAA_G________________GAACG...UGA-3'\n______________U_CUGG_AC_GCUGGCAU\n______________|_||||_||_|||:||||\n______________A_GACC_UG_CGAUCGUA\n3'-UUU...CACCA_G____A__U________AAAUA...UCG-5'\n_____________|__________________|\n_____________41_________________22\n |
277 -- 283 |
23 -- 29 |
-20.12 kcal/mol |
6.74388 kcal/mol |
4.55554 kcal/mol |
267 284@LB@ | |@LB@5'-GGA...UAAAA G GAACG...UGA-3'@LB@ U CUGG AC GCUGGCAU@LB@ | |||| || |||:||||@LB@ A GACC UG CGAUCGUA@LB@3'-UUU...CACCA G A U AAAUA...UCG-5'@LB@ | |@LB@ 41 22@LB@@LB@@LB@Energy -8.82 kcal/mol@LB@Hybridization Energy -20.12 kcal/mol@LB@Unfolding Energy - mRNA 6.74388 kcal/mol@LB@Unfolding Energy - sRNA 4.55554 kcal/mol@LB@@LB@Position - mRNA 268 -- 283@LB@Position - sRNA 23 -- 40@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 140 |
0.006493 |
0.1559 |
b1916 |
sdiA |
-12.48 |
0.051059 |
182 -- 224 |
1 -- 50 |
quorum-sensing transcriptional activator |
|
_____________181_________________________________________________225\n_____________|___________________________________________________|\n5'-UGU...CUCUC_____C_____G_____U______U___GGAUAA___AU____________UGGCG...AGG-3'\n______________AGGGG___GUU_C_GGU_UA_CUA_GCA_______GG_____UUUUUCAGC\n______________|||:|___|||_|_|||_:|_|||_|||_______||_____|||||||||\n______________UCCUC___CAA_G_CCA_GU_GAU_CGU_______CC_____AAAAAGUCG\n3'-UUU...CCGAU_____CAC___G_A___U__C_______AAAAUAC__AAUAC_________-5'\n_____________|__________________________________________________|\n_____________51_________________________________________________1\n |
218 -- 224 |
1 -- 7 |
-26.3158 kcal/mol |
9.17132 kcal/mol |
4.6634 kcal/mol |
181 225@LB@ | |@LB@5'-UGU...CUCUC C G U U GGAUAA AU UGGCG...AGG-3'@LB@ AGGGG GUU C GGU UA CUA GCA GG UUUUUCAGC@LB@ |||:| ||| | ||| :| ||| ||| || |||||||||@LB@ UCCUC CAA G CCA GU GAU CGU CC AAAAAGUCG@LB@3'-UUU...CCGAU CAC G A U C AAAAUAC AAUAC -5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -12.48 kcal/mol@LB@Hybridization Energy -26.3158 kcal/mol@LB@Unfolding Energy - mRNA 9.17132 kcal/mol@LB@Unfolding Energy - sRNA 4.6634 kcal/mol@LB@@LB@Position - mRNA 182 -- 224@LB@Position - sRNA 1 -- 50@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 1 -- 7@LB@ |
