| 85 |
0.002796 |
0.1082 |
b4536 |
yobH |
-12.68 |
0.045962 |
237 -- 287 |
1 -- 38 |
uncharacterized protein |
|
_____________236__________________________________________________288\n_____________|____________________________________________________|\n5'-CAA...UAGCA_________AUAGGAUUAUUA__C____GA______C___U__A__GGA___AAAGA...CCG-3'\n______________CUGGUAUGG____________CU_AGCG___UAUGG_GUU_UG_UU___AGC\n______________||||||::|____________||_|||:___|||||_|||_||_||___|||\n______________GACCAUGUC____________GA_UCGU___AUACC_CAA_AC_AA___UCG\n3'-UUU...CCAAG____________________________AAA_________U__A__AAG___-5'\n_____________|___________________________________________________|\n_____________39__________________________________________________1\n |
239 -- 245 |
30 -- 36 |
-25.5821 kcal/mol |
8.3664 kcal/mol |
4.54019 kcal/mol |
236 288@LB@ | |@LB@5'-CAA...UAGCA AUAGGAUUAUUA C GA C U A GGA AAAGA...CCG-3'@LB@ CUGGUAUGG CU AGCG UAUGG GUU UG UU AGC@LB@ ||||||::| || |||: ||||| ||| || || |||@LB@ GACCAUGUC GA UCGU AUACC CAA AC AA UCG@LB@3'-UUU...CCAAG AAA U A AAG -5'@LB@ | |@LB@ 39 1@LB@@LB@@LB@Energy -12.68 kcal/mol@LB@Hybridization Energy -25.5821 kcal/mol@LB@Unfolding Energy - mRNA 8.3664 kcal/mol@LB@Unfolding Energy - sRNA 4.54019 kcal/mol@LB@@LB@Position - mRNA 237 -- 287@LB@Position - sRNA 1 -- 38@LB@Position Seed - mRNA 239 -- 245@LB@Position Seed - sRNA 30 -- 36@LB@ |
| 149 |
0.00724 |
0.1633 |
b3494 |
uspB |
-9.24 |
0.227320 |
190 -- 228 |
15 -- 51 |
universal stress (ethanol tolerance) protein B |
|
_____________189_____________________________________229\n_____________|_______________________________________|\n5'-AAU...UCGCC_______A___AUGAUAA___C_GUC_____AUUU____CUUUA...UGC-3'\n______________GGGGAGG_GGU_______GCA_C___GCAUU____UGGG\n______________::|||||_|||_______:||_|___|||||____||||\n______________UUCCUCC_CCA_______UGU_G___CGUAA____ACCC\n3'-UUU...UCCGA_______A___AGGACCA___C_AU______AAU_____AAUAC...UCG-5'\n_____________|_______________________________________|\n_____________52______________________________________14\n |
190 -- 196 |
45 -- 51 |
-24.8188 kcal/mol |
10.9257 kcal/mol |
4.65724 kcal/mol |
189 229@LB@ | |@LB@5'-AAU...UCGCC A AUGAUAA C GUC AUUU CUUUA...UGC-3'@LB@ GGGGAGG GGU GCA C GCAUU UGGG@LB@ ::||||| ||| :|| | ||||| ||||@LB@ UUCCUCC CCA UGU G CGUAA ACCC@LB@3'-UUU...UCCGA A AGGACCA C AU AAU AAUAC...UCG-5'@LB@ | |@LB@ 52 14@LB@@LB@@LB@Energy -9.24 kcal/mol@LB@Hybridization Energy -24.8188 kcal/mol@LB@Unfolding Energy - mRNA 10.9257 kcal/mol@LB@Unfolding Energy - sRNA 4.65724 kcal/mol@LB@@LB@Position - mRNA 190 -- 228@LB@Position - sRNA 15 -- 51@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 45 -- 51@LB@ |
| 173 |
0.009278 |
0.1803 |
b3495 |
uspA |
-10.68 |
0.124344 |
253 -- 279 |
16 -- 40 |
universal stress global response regulator |
|
_____________252_________________________280\n_____________|___________________________|\n5'-GUC...CAAAG________G__AA____GUCUC_____CUCGC...AAG-3'\n______________UUCUGGUA_AG__AGCA_____UAUGG\n______________|:||||||_||__||||_____|||||\n______________AGGACCAU_UC__UCGU_____AUACC\n3'-UUU...CACCA________G__GA____AAA_______CAAUA...UCG-5'\n_____________|___________________________|\n_____________41__________________________15\n |
254 -- 260 |
33 -- 39 |
-24.2729 kcal/mol |
9.02768 kcal/mol |
4.56874 kcal/mol |
252 280@LB@ | |@LB@5'-GUC...CAAAG G AA GUCUC CUCGC...AAG-3'@LB@ UUCUGGUA AG AGCA UAUGG@LB@ |:|||||| || |||| |||||@LB@ AGGACCAU UC UCGU AUACC@LB@3'-UUU...CACCA G GA AAA CAAUA...UCG-5'@LB@ | |@LB@ 41 15@LB@@LB@@LB@Energy -10.68 kcal/mol@LB@Hybridization Energy -24.2729 kcal/mol@LB@Unfolding Energy - mRNA 9.02768 kcal/mol@LB@Unfolding Energy - sRNA 4.56874 kcal/mol@LB@@LB@Position - mRNA 253 -- 279@LB@Position - sRNA 16 -- 40@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 33 -- 39@LB@ |
| 28 |
0.000409 |
0.0491 |
b1688 |
ydiK |
-9.69 |
0.189548 |
195 -- 219 |
1 -- 33 |
UPF0118 family inner membrane protein |
|
_____________194_______________________________220\n_____________|_________________________________|\n5'-AUG...GAAAA__________________UAA_____CG_____CCAGG...CCU-3'\n______________GUAGUUA________UGG___AUGUU__UCAGC\n______________::||:||________|||___|||||__|||||\n______________UGUCGAU________ACC___UACAA__AGUCG\n3'-UUU...GACCA_______CGUAAAAU___CAA_____AA_____-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
195 -- 201 |
27 -- 33 |
-14.5165 kcal/mol |
3.32905 kcal/mol |
1.49313 kcal/mol |
194 220@LB@ | |@LB@5'-AUG...GAAAA UAA CG CCAGG...CCU-3'@LB@ GUAGUUA UGG AUGUU UCAGC@LB@ ::||:|| ||| ||||| |||||@LB@ UGUCGAU ACC UACAA AGUCG@LB@3'-UUU...GACCA CGUAAAAU CAA AA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -9.69 kcal/mol@LB@Hybridization Energy -14.5165 kcal/mol@LB@Unfolding Energy - mRNA 3.32905 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 195 -- 219@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 195 -- 201@LB@Position Seed - sRNA 27 -- 33@LB@ |
| 132 |
0.005751 |
0.146 |
b2294 |
yfbU |
-8.39 |
0.309344 |
3 -- 25 |
24 -- 50 |
UPF0304 family protein |
|
_____________2______________________________26\n_____________|______________________________|\n_________5'-GC____________________GGU_______CCCGU...AAA-3'\n______________AGGAG______UCUGG_ACA___GUUGGCA\n______________|||||______:||||_|||___|:|:|||\n______________UCCUC______GGACC_UGU___CGAUCGU\n3'-UUU...CCGAU_____CACCAA_____A_____________AAAAU...UCG-5'\n_____________|______________________________|\n_____________51_____________________________23\n |
19 -- 25 |
24 -- 30 |
-20.5947 kcal/mol |
7.58762 kcal/mol |
4.6134 kcal/mol |
2 26@LB@ | |@LB@ 5'-GC GGU CCCGU...AAA-3'@LB@ AGGAG UCUGG ACA GUUGGCA@LB@ ||||| :|||| ||| |:|:|||@LB@ UCCUC GGACC UGU CGAUCGU@LB@3'-UUU...CCGAU CACCAA A AAAAU...UCG-5'@LB@ | |@LB@ 51 23@LB@@LB@@LB@Energy -8.39 kcal/mol@LB@Hybridization Energy -20.5947 kcal/mol@LB@Unfolding Energy - mRNA 7.58762 kcal/mol@LB@Unfolding Energy - sRNA 4.6134 kcal/mol@LB@@LB@Position - mRNA 3 -- 25@LB@Position - sRNA 24 -- 50@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 108 |
0.004185 |
0.1296 |
b2158 |
yeiH |
-13.47 |
0.029300 |
232 -- 260 |
12 -- 35 |
UPF0324 family inner membrane protein |
|
_____________231___________________________261\n_____________|_____________________________|\n5'-CAC...ACAUC_____CUG___________UCCG______GCCCU...GUG-3'\n______________GUACA___UGGCAUUUUAU____GGGUUA\n______________|||||___|:|||||||||____||||||\n______________CAUGU___AUCGUAAAAUA____CCCAAU\n3'-UUU...AGGAC_____CG______________________ACAAA...UCG-5'\n_____________|_____________________________|\n_____________36____________________________11\n |
244 -- 250 |
18 -- 24 |
-22.9966 kcal/mol |
8.07046 kcal/mol |
1.45491 kcal/mol |
231 261@LB@ | |@LB@5'-CAC...ACAUC CUG UCCG GCCCU...GUG-3'@LB@ GUACA UGGCAUUUUAU GGGUUA@LB@ ||||| |:||||||||| ||||||@LB@ CAUGU AUCGUAAAAUA CCCAAU@LB@3'-UUU...AGGAC CG ACAAA...UCG-5'@LB@ | |@LB@ 36 11@LB@@LB@@LB@Energy -13.47 kcal/mol@LB@Hybridization Energy -22.9966 kcal/mol@LB@Unfolding Energy - mRNA 8.07046 kcal/mol@LB@Unfolding Energy - sRNA 1.45491 kcal/mol@LB@@LB@Position - mRNA 232 -- 260@LB@Position - sRNA 12 -- 35@LB@Position Seed - mRNA 244 -- 250@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 91 |
0.003099 |
0.1126 |
b2343 |
yfcZ |
-10.72 |
0.122030 |
27 -- 34 |
42 -- 49 |
UPF0381 family protein |
|
_____________26_______35\n_____________|________|\n5'-GAA...AAUUU________CGCAC...UGU-3'\n______________GGAGGUGG\n______________||||||||\n______________CCUCCACC\n3'-UUU...CGAUU________AAGGA...UCG-5'\n_____________|________|\n_____________50_______41\n |
28 -- 34 |
42 -- 48 |
-16.5707 kcal/mol |
3.08276 kcal/mol |
2.77009 kcal/mol |
26 35@LB@ | |@LB@5'-GAA...AAUUU CGCAC...UGU-3'@LB@ GGAGGUGG@LB@ ||||||||@LB@ CCUCCACC@LB@3'-UUU...CGAUU AAGGA...UCG-5'@LB@ | |@LB@ 50 41@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -16.5707 kcal/mol@LB@Unfolding Energy - mRNA 3.08276 kcal/mol@LB@Unfolding Energy - sRNA 2.77009 kcal/mol@LB@@LB@Position - mRNA 27 -- 34@LB@Position - sRNA 42 -- 49@LB@Position Seed - mRNA 28 -- 34@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 33 |
0.0006117 |
0.0623 |
b1795 |
yeaQ |
-12.41 |
0.053010 |
276 -- 283 |
42 -- 49 |
UPF0410 family protein |
|
_____________275______284\n_____________|________|\n5'-AUA...AAGAU________AUUCU...UCC-3'\n______________GGAGGUGG\n______________||||||||\n______________CCUCCACC\n3'-UUU...CGAUU________AAGGA...UCG-5'\n_____________|________|\n_____________50_______41\n |
277 -- 283 |
42 -- 48 |
-16.41 kcal/mol |
1.22894 kcal/mol |
2.77009 kcal/mol |
275 284@LB@ | |@LB@5'-AUA...AAGAU AUUCU...UCC-3'@LB@ GGAGGUGG@LB@ ||||||||@LB@ CCUCCACC@LB@3'-UUU...CGAUU AAGGA...UCG-5'@LB@ | |@LB@ 50 41@LB@@LB@@LB@Energy -12.41 kcal/mol@LB@Hybridization Energy -16.41 kcal/mol@LB@Unfolding Energy - mRNA 1.22894 kcal/mol@LB@Unfolding Energy - sRNA 2.77009 kcal/mol@LB@@LB@Position - mRNA 276 -- 283@LB@Position - sRNA 42 -- 49@LB@Position Seed - mRNA 277 -- 283@LB@Position Seed - sRNA 42 -- 48@LB@ |
| 183 |
0.01048 |
0.1919 |
b1250 |
kch |
-17.60 |
0.001460 |
228 -- 258 |
1 -- 33 |
voltage-gated potassium channel |
|
_____________227_______________________________259\n_____________|_________________________________|\n5'-AAC...AACAA_____AACAAA_________GACCC________ACGAC...UUA-3'\n______________ACAGC______UUUAUGGGU_______UUCGGC\n______________|||||______|||||||||_______|||:||\n______________UGUCG______AAAUACCCA_______AAGUCG\n3'-UUU...GACCA_____AUCGUA_________AUACAAA______-5'\n_____________|________________________________|\n_____________34_______________________________1\n |
241 -- 247 |
14 -- 20 |
-24.8286 kcal/mol |
5.73827 kcal/mol |
1.49313 kcal/mol |
227 259@LB@ | |@LB@5'-AAC...AACAA AACAAA GACCC ACGAC...UUA-3'@LB@ ACAGC UUUAUGGGU UUCGGC@LB@ ||||| ||||||||| |||:||@LB@ UGUCG AAAUACCCA AAGUCG@LB@3'-UUU...GACCA AUCGUA AUACAAA -5'@LB@ | |@LB@ 34 1@LB@@LB@@LB@Energy -17.60 kcal/mol@LB@Hybridization Energy -24.8286 kcal/mol@LB@Unfolding Energy - mRNA 5.73827 kcal/mol@LB@Unfolding Energy - sRNA 1.49313 kcal/mol@LB@@LB@Position - mRNA 228 -- 258@LB@Position - sRNA 1 -- 33@LB@Position Seed - mRNA 241 -- 247@LB@Position Seed - sRNA 14 -- 20@LB@ |
| 153 |
0.00769 |
0.1686 |
b3292 |
zntR |
-12.84 |
0.042049 |
212 -- 231 |
16 -- 37 |
zntA gene transcriptional activator |
|
_____________211____________________232\n_____________|______________________|\n5'-UGA...CGCAU______________AAA_____CGGAA...CUG-3'\n______________UGGUG_AGCUGGCA____AUGG\n______________||||:_||||:|||____||||\n______________ACCAU_UCGAUCGU____UACC\n3'-UUU...CAAGG_____G________AAAA____CAAUA...UCG-5'\n_____________|______________________|\n_____________38_____________________15\n |
218 -- 224 |
24 -- 30 |
-20.2277 kcal/mol |
4.73271 kcal/mol |
2.65753 kcal/mol |
211 232@LB@ | |@LB@5'-UGA...CGCAU AAA CGGAA...CUG-3'@LB@ UGGUG AGCUGGCA AUGG@LB@ ||||: ||||:||| ||||@LB@ ACCAU UCGAUCGU UACC@LB@3'-UUU...CAAGG G AAAA CAAUA...UCG-5'@LB@ | |@LB@ 38 15@LB@@LB@@LB@Energy -12.84 kcal/mol@LB@Hybridization Energy -20.2277 kcal/mol@LB@Unfolding Energy - mRNA 4.73271 kcal/mol@LB@Unfolding Energy - sRNA 2.65753 kcal/mol@LB@@LB@Position - mRNA 212 -- 231@LB@Position - sRNA 16 -- 37@LB@Position Seed - mRNA 218 -- 224@LB@Position Seed - sRNA 24 -- 30@LB@ |
