| 21 |
0.001002 |
0.1516 |
b4045 |
yjbJ |
-13.25 |
0.018991 |
259 -- 290 |
28 -- 62 |
stress-induced protein UPF0337 family |
|
_____________258__________________________________291\n_____________|____________________________________|\n5'-CGU...AGAGC_______C_____U___CGAU________U______AUCAU...AAG-3'\n______________AAUGGGG__AAAC_GAC_______GAUGA_AUGACG\n______________|||:|||__||||_|||_______:||||_||||||\n______________UUAUCCC__UUUG_CUG_______UUACU_UACUGC\n3'-UUU...CAACU_______CA____U___UAAGUCU____________CAUUA...UCG-5'\n_____________|____________________________________|\n_____________63___________________________________27\n |
259 -- 265 |
56 -- 62 |
-23.7721 kcal/mol |
4.22826 kcal/mol |
6.29418 kcal/mol |
258 291@LB@ | |@LB@5'-CGU...AGAGC C U CGAU U AUCAU...AAG-3'@LB@ AAUGGGG AAAC GAC GAUGA AUGACG@LB@ |||:||| |||| ||| :|||| ||||||@LB@ UUAUCCC UUUG CUG UUACU UACUGC@LB@3'-UUU...CAACU CA U UAAGUCU CAUUA...UCG-5'@LB@ | |@LB@ 63 27@LB@@LB@@LB@Energy -13.25 kcal/mol@LB@Hybridization Energy -23.7721 kcal/mol@LB@Unfolding Energy - mRNA 4.22826 kcal/mol@LB@Unfolding Energy - sRNA 6.29418 kcal/mol@LB@@LB@Position - mRNA 259 -- 290@LB@Position - sRNA 28 -- 62@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 56 -- 62@LB@ |
| 62 |
0.008588 |
0.4523 |
b1746 |
astD |
-15.44 |
0.005443 |
188 -- 231 |
17 -- 59 |
succinylglutamic semialdehyde dehydrogenase |
|
_____________187___________________________________________232\n_____________|_____________________________________________|\n5'-GCA...CGCAG___A_A__________GACUUU______UA_______C_______CGGGC...AUG-3'\n______________AGG_G_AAACAG_CAU______AUGGAU__ACGGUGA_UGGAUAA\n______________|||_|_||||||_|||______|||:||__|||||:|_|::||||\n______________UCC_C_UUUGUC_GUA______UACUUA__UGCCAUU_AUUUAUU\n3'-UUU...CUUUA___C_A______U___AGUCUU______C________________UCAAU...UCG-5'\n_____________|_____________________________________________|\n_____________60____________________________________________16\n |
217 -- 223 |
24 -- 30 |
-28.1653 kcal/mol |
6.40491 kcal/mol |
6.3229 kcal/mol |
187 232@LB@ | |@LB@5'-GCA...CGCAG A A GACUUU UA C CGGGC...AUG-3'@LB@ AGG G AAACAG CAU AUGGAU ACGGUGA UGGAUAA@LB@ ||| | |||||| ||| |||:|| |||||:| |::||||@LB@ UCC C UUUGUC GUA UACUUA UGCCAUU AUUUAUU@LB@3'-UUU...CUUUA C A U AGUCUU C UCAAU...UCG-5'@LB@ | |@LB@ 60 16@LB@@LB@@LB@Energy -15.44 kcal/mol@LB@Hybridization Energy -28.1653 kcal/mol@LB@Unfolding Energy - mRNA 6.40491 kcal/mol@LB@Unfolding Energy - sRNA 6.3229 kcal/mol@LB@@LB@Position - mRNA 188 -- 231@LB@Position - sRNA 17 -- 59@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 24 -- 30@LB@ |
| 164 |
0.02654 |
0.526 |
b3993 |
thiE |
-11.45 |
0.048376 |
123 -- 151 |
37 -- 65 |
thiamine phosphate synthase (thiamine phosphate pyrophosphorylase) |
|
_____________122____________________________152\n_____________|______________________________|\n5'-CAC...ACUAU_________AAU__________G_______ACUUC...UAC-3'\n______________UGAAAUGGG____GGCGGAUAU_UCGGAGA\n______________||||||:||____::|:||:||_||:||:|\n______________ACUUUAUCC____UUGUCUGUA_AGUCUUU\n3'-UUU...GGCCA_________CCAU_________________ACUUA...UCG-5'\n_____________|______________________________|\n_____________66_____________________________36\n |
125 -- 131 |
57 -- 63 |
-26.5084 kcal/mol |
7.89908 kcal/mol |
7.1561 kcal/mol |
122 152@LB@ | |@LB@5'-CAC...ACUAU AAU G ACUUC...UAC-3'@LB@ UGAAAUGGG GGCGGAUAU UCGGAGA@LB@ ||||||:|| ::|:||:|| ||:||:|@LB@ ACUUUAUCC UUGUCUGUA AGUCUUU@LB@3'-UUU...GGCCA CCAU ACUUA...UCG-5'@LB@ | |@LB@ 66 36@LB@@LB@@LB@Energy -11.45 kcal/mol@LB@Hybridization Energy -26.5084 kcal/mol@LB@Unfolding Energy - mRNA 7.89908 kcal/mol@LB@Unfolding Energy - sRNA 7.1561 kcal/mol@LB@@LB@Position - mRNA 123 -- 151@LB@Position - sRNA 37 -- 65@LB@Position Seed - mRNA 125 -- 131@LB@Position Seed - sRNA 57 -- 63@LB@ |
| 75 |
0.01076 |
0.4523 |
b4291 |
fecA |
-8.60 |
0.179326 |
183 -- 193 |
2 -- 12 |
TonB-dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR-interacting protein |
|
_____________182_________194\n_____________|___________|\n5'-AGC...ACAAA___________GGAAG...CUG-3'\n______________AAUGAUGAUGG\n______________|||||||||:|\n______________UUACUACUAUC\n3'-UUU...UUCAA___________G-5'\n_____________|___________|\n_____________13__________1\n |
187 -- 193 |
2 -- 8 |
-12.8036 kcal/mol |
4.16536 kcal/mol |
0.0386655 kcal/mol |
182 194@LB@ | |@LB@5'-AGC...ACAAA GGAAG...CUG-3'@LB@ AAUGAUGAUGG@LB@ |||||||||:|@LB@ UUACUACUAUC@LB@3'-UUU...UUCAA G-5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -12.8036 kcal/mol@LB@Unfolding Energy - mRNA 4.16536 kcal/mol@LB@Unfolding Energy - sRNA 0.0386655 kcal/mol@LB@@LB@Position - mRNA 183 -- 193@LB@Position - sRNA 2 -- 12@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 44 |
0.004782 |
0.3568 |
b3243 |
aaeR |
-11.65 |
0.043804 |
4 -- 44 |
1 -- 57 |
transcriptional regulator for aaeXAB operon |
|
_____________3_________________________________________________________45\n_____________|_________________________________________________________|\n________5'-AAC_________________UGU____CCU_____U_____G__________________AGGCG...UCA-3'\n______________GGG_AAACAGAC__UCA____UGA____UGGU_GUAAA_AGAG___________AGC\n______________|||_||||||||__|||____|||____:|||_:||||_|:||___________|||\n______________CCC_UUUGUCUG__AGU____ACU____GCCA_UAUUU_UUUC___________UCG\n3'-UUU...UUAUC___A________UA___CUUU___UACU____U_____A____AAUUACUACUA___-5'\n_____________|________________________________________________________|\n_____________58_______________________________________________________1\n |
8 -- 14 |
46 -- 52 |
-26.9604 kcal/mol |
8.9713 kcal/mol |
6.33758 kcal/mol |
3 45@LB@ | |@LB@ 5'-AAC UGU CCU U G AGGCG...UCA-3'@LB@ GGG AAACAGAC UCA UGA UGGU GUAAA AGAG AGC@LB@ ||| |||||||| ||| ||| :||| :|||| |:|| |||@LB@ CCC UUUGUCUG AGU ACU GCCA UAUUU UUUC UCG@LB@3'-UUU...UUAUC A UA CUUU UACU U A AAUUACUACUA -5'@LB@ | |@LB@ 58 1@LB@@LB@@LB@Energy -11.65 kcal/mol@LB@Hybridization Energy -26.9604 kcal/mol@LB@Unfolding Energy - mRNA 8.9713 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 4 -- 44@LB@Position - sRNA 1 -- 57@LB@Position Seed - mRNA 8 -- 14@LB@Position Seed - sRNA 46 -- 52@LB@ |
| 53 |
0.006355 |
0.3902 |
b2916 |
argP |
-17.11 |
0.001913 |
217 -- 267 |
1 -- 51 |
transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor |
|
_____________216____________________________________________________268\n_____________|______________________________________________________|\n5'-GGC...GGACU____A_____A____CAC_______________C_____CGAG_____UUG___GCGCG...CAG-3'\n______________ACAG_ACAUU_CAGG___UGGAUG_CGGUGAUA_GUGAA______GAU___AGC\n______________||||_|||||_|||:___||:|||_||||:|||_:|:||______|||___|||\n______________UGUC_UGUAA_GUCU___ACUUAC_GCCAUUAU_UAUUU______CUA___UCG\n3'-UUU...CCAUU_______________UU_______U________U_____CAAUUA___CUA___-5'\n_____________|_____________________________________________________|\n_____________52____________________________________________________1\n |
242 -- 248 |
22 -- 28 |
-33.3201 kcal/mol |
9.87503 kcal/mol |
6.33528 kcal/mol |
216 268@LB@ | |@LB@5'-GGC...GGACU A A CAC C CGAG UUG GCGCG...CAG-3'@LB@ ACAG ACAUU CAGG UGGAUG CGGUGAUA GUGAA GAU AGC@LB@ |||| ||||| |||: ||:||| ||||:||| :|:|| ||| |||@LB@ UGUC UGUAA GUCU ACUUAC GCCAUUAU UAUUU CUA UCG@LB@3'-UUU...CCAUU UU U U CAAUUA CUA -5'@LB@ | |@LB@ 52 1@LB@@LB@@LB@Energy -17.11 kcal/mol@LB@Hybridization Energy -33.3201 kcal/mol@LB@Unfolding Energy - mRNA 9.87503 kcal/mol@LB@Unfolding Energy - sRNA 6.33528 kcal/mol@LB@@LB@Position - mRNA 217 -- 267@LB@Position - sRNA 1 -- 51@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 22 -- 28@LB@ |
| 87 |
0.01323 |
0.4992 |
b1951 |
rcsA |
-11.40 |
0.049597 |
149 -- 196 |
25 -- 65 |
transcriptional regulator of colanic acid capsular biosynthesis |
|
_____________148______________________________________________197\n_____________|________________________________________________|\n5'-GUU...CAUGA_______UUCA______G___AUUAU____ACGCAU_______G____UGCCA...UUG-3'\n______________UGAAAUA____GGUAAG_GGA_____CGUU______UGAGUGA_GGUA\n______________|||||||____|||||:_:||_____|:||______|||:|||_||||\n______________ACUUUAU____CCAUUU_UCU_____GUAA______ACUUACU_CCAU\n3'-UUU...GGCCA_______CC________G____________GUCUUU_______G____UAUUU...UCG-5'\n_____________|________________________________________________|\n_____________66_______________________________________________24\n |
149 -- 155 |
59 -- 65 |
-29.5865 kcal/mol |
10.9819 kcal/mol |
7.2015 kcal/mol |
148 197@LB@ | |@LB@5'-GUU...CAUGA UUCA G AUUAU ACGCAU G UGCCA...UUG-3'@LB@ UGAAAUA GGUAAG GGA CGUU UGAGUGA GGUA@LB@ ||||||| |||||: :|| |:|| |||:||| ||||@LB@ ACUUUAU CCAUUU UCU GUAA ACUUACU CCAU@LB@3'-UUU...GGCCA CC G GUCUUU G UAUUU...UCG-5'@LB@ | |@LB@ 66 24@LB@@LB@@LB@Energy -11.40 kcal/mol@LB@Hybridization Energy -29.5865 kcal/mol@LB@Unfolding Energy - mRNA 10.9819 kcal/mol@LB@Unfolding Energy - sRNA 7.2015 kcal/mol@LB@@LB@Position - mRNA 149 -- 196@LB@Position - sRNA 25 -- 65@LB@Position Seed - mRNA 149 -- 155@LB@Position Seed - sRNA 59 -- 65@LB@ |
| 70 |
0.01004 |
0.4523 |
b1658 |
purR |
-15.06 |
0.006831 |
174 -- 223 |
1 -- 65 |
transcriptional repressor hypoxanthine-binding |
|
_____________173________________________________________________________________224\n_____________|__________________________________________________________________|\n5'-UUU...GGAGC______UA____C______GU_________G_______AAC______A__________________GAAAC...GCA-3'\n______________UGAAGU__GGGU___UGGA______GAAAU_GAAUGGC___AAUAAA__________GAUG_UAGC\n______________||||:|__||||___::||______|||||_|||||:|___||||||__________||||_||||\n______________ACUUUA__CCCA___GUCU______CUUUA_CUUACUG___UUAUUU__________CUAC_AUCG\n3'-UUU...GGCCA______UC____UUU____GUAAGU_____________CCA______AUUUCAAUUA____U____-5'\n_____________|_________________________________________________________________|\n_____________66________________________________________________________________1\n |
199 -- 205 |
29 -- 35 |
-29.7477 kcal/mol |
7.45199 kcal/mol |
7.23987 kcal/mol |
173 224@LB@ | |@LB@5'-UUU...GGAGC UA C GU G AAC A GAAAC...GCA-3'@LB@ UGAAGU GGGU UGGA GAAAU GAAUGGC AAUAAA GAUG UAGC@LB@ ||||:| |||| ::|| ||||| |||||:| |||||| |||| ||||@LB@ ACUUUA CCCA GUCU CUUUA CUUACUG UUAUUU CUAC AUCG@LB@3'-UUU...GGCCA UC UUU GUAAGU CCA AUUUCAAUUA U -5'@LB@ | |@LB@ 66 1@LB@@LB@@LB@Energy -15.06 kcal/mol@LB@Hybridization Energy -29.7477 kcal/mol@LB@Unfolding Energy - mRNA 7.45199 kcal/mol@LB@Unfolding Energy - sRNA 7.23987 kcal/mol@LB@@LB@Position - mRNA 174 -- 223@LB@Position - sRNA 1 -- 65@LB@Position Seed - mRNA 199 -- 205@LB@Position Seed - sRNA 29 -- 35@LB@ |
| 182 |
0.03007 |
0.5424 |
b3131 |
agaR |
-10.52 |
0.076061 |
148 -- 177 |
28 -- 59 |
transcriptional repressor of the aga regulon |
|
_____________147______________________________178\n_____________|________________________________|\n5'-CAG...UAGAA___C__U________AAAC_____________AAAGU...AGG-3'\n______________AGG_GU_AAUAGGCA____GAAAUGAA__ACG\n______________|||_||_||:||:||____||||||||__|||\n______________UCC_CA_UUGUCUGU____CUUUACUU__UGC\n3'-UUU...CUUUA___C__U________AAGU________AC___CAUUA...UCG-5'\n_____________|________________________________|\n_____________60_______________________________27\n |
167 -- 173 |
34 -- 40 |
-23.0737 kcal/mol |
6.26419 kcal/mol |
6.28754 kcal/mol |
147 178@LB@ | |@LB@5'-CAG...UAGAA C U AAAC AAAGU...AGG-3'@LB@ AGG GU AAUAGGCA GAAAUGAA ACG@LB@ ||| || ||:||:|| |||||||| |||@LB@ UCC CA UUGUCUGU CUUUACUU UGC@LB@3'-UUU...CUUUA C U AAGU AC CAUUA...UCG-5'@LB@ | |@LB@ 60 27@LB@@LB@@LB@Energy -10.52 kcal/mol@LB@Hybridization Energy -23.0737 kcal/mol@LB@Unfolding Energy - mRNA 6.26419 kcal/mol@LB@Unfolding Energy - sRNA 6.28754 kcal/mol@LB@@LB@Position - mRNA 148 -- 177@LB@Position - sRNA 28 -- 59@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 34 -- 40@LB@ |
| 141 |
0.0236 |
0.526 |
b3339 |
tufA |
-10.69 |
0.070202 |
69 -- 84 |
1 -- 19 |
translation elongation factor EF-Tu 1 |
b3980 |
_____________68__________________85\n_____________|___________________|\n5'-AAU...AUUCC___________________GCCGA...CCA-3'\n______________UGAAGU__AUGAUGA_AGC\n______________|:||||__|||||||_|||\n______________AUUUCA__UACUACU_UCG\n3'-UUU...UAUUU______AU_______A___-5'\n_____________|__________________|\n_____________20_________________1\n |
75 -- 81 |
5 -- 11 |
-13.5879 kcal/mol |
2.83361 kcal/mol |
0.0638423 kcal/mol |
68 85@LB@ | |@LB@5'-AAU...AUUCC GCCGA...CCA-3'@LB@ UGAAGU AUGAUGA AGC@LB@ |:|||| ||||||| |||@LB@ AUUUCA UACUACU UCG@LB@3'-UUU...UAUUU AU A -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -10.69 kcal/mol@LB@Hybridization Energy -13.5879 kcal/mol@LB@Unfolding Energy - mRNA 2.83361 kcal/mol@LB@Unfolding Energy - sRNA 0.0638423 kcal/mol@LB@@LB@Position - mRNA 69 -- 84@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 75 -- 81@LB@Position Seed - sRNA 5 -- 11@LB@ |
