90 |
0.01478 |
0.5059 |
b0740 |
tolB |
-11.20 |
0.054749 |
186 -- 207 |
1 -- 21 |
periplasmic protein |
|
_____________185_____________________208\n_____________|_______________________|\n5'-UCC...GUCCA_______GAGAU___________AGGCA...CCG-3'\n______________GAUAAGG_____AUGAUGA_AGC\n______________:||||:|_____|||||||_|||\n______________UUAUUUC_____UACUACU_UCG\n3'-UUU...AUUAU_______AAU_________A___-5'\n_____________|______________________|\n_____________22_____________________1\n |
198 -- 204 |
5 -- 11 |
-16.1118 kcal/mol |
4.84175 kcal/mol |
0.0669945 kcal/mol |
185 208@LB@ | |@LB@5'-UCC...GUCCA GAGAU AGGCA...CCG-3'@LB@ GAUAAGG AUGAUGA AGC@LB@ :||||:| ||||||| |||@LB@ UUAUUUC UACUACU UCG@LB@3'-UUU...AUUAU AAU A -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.20 kcal/mol@LB@Hybridization Energy -16.1118 kcal/mol@LB@Unfolding Energy - mRNA 4.84175 kcal/mol@LB@Unfolding Energy - sRNA 0.0669945 kcal/mol@LB@@LB@Position - mRNA 186 -- 207@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 5 -- 11@LB@ |
199 |
0.03375 |
0.5555 |
b3860 |
dsbA |
-9.14 |
0.142422 |
273 -- 281 |
48 -- 56 |
periplasmic protein disulfide isomerase I |
|
_____________272_______282\n_____________|_________|\n5'-UUU...AAGAU_________UACAC...AAC-3'\n______________GGUAAACAG\n______________|||||||||\n______________CCAUUUGUC\n3'-UUU...UAUCC_________UGUAA...UCG-5'\n_____________|_________|\n_____________57________47\n |
275 -- 281 |
48 -- 54 |
-12.2563 kcal/mol |
1.07557 kcal/mol |
2.03935 kcal/mol |
272 282@LB@ | |@LB@5'-UUU...AAGAU UACAC...AAC-3'@LB@ GGUAAACAG@LB@ |||||||||@LB@ CCAUUUGUC@LB@3'-UUU...UAUCC UGUAA...UCG-5'@LB@ | |@LB@ 57 47@LB@@LB@@LB@Energy -9.14 kcal/mol@LB@Hybridization Energy -12.2563 kcal/mol@LB@Unfolding Energy - mRNA 1.07557 kcal/mol@LB@Unfolding Energy - sRNA 2.03935 kcal/mol@LB@@LB@Position - mRNA 273 -- 281@LB@Position - sRNA 48 -- 56@LB@Position Seed - mRNA 275 -- 281@LB@Position Seed - sRNA 48 -- 54@LB@ |
168 |
0.02737 |
0.531 |
b1385 |
feaB |
-11.89 |
0.038862 |
180 -- 210 |
1 -- 28 |
phenylacetaldehyde dehydrogenase |
|
_____________179_____________________________211\n_____________|_______________________________|\n5'-UUG...CACUG_____AU_______AAA________CAG___CGCAU...GUG-3'\n______________GGUAA__AAUAAGG___AGUGAUGA___AGC\n______________|||||__|||||:|___|:||||||___|||\n______________CCAUU__UUAUUUC___UUACUACU___UCG\n3'-UUU...UACUG_____AU_______AA_________A_____-5'\n_____________|______________________________|\n_____________29_____________________________1\n |
198 -- 204 |
5 -- 11 |
-19.4278 kcal/mol |
6.77275 kcal/mol |
0.766821 kcal/mol |
179 211@LB@ | |@LB@5'-UUG...CACUG AU AAA CAG CGCAU...GUG-3'@LB@ GGUAA AAUAAGG AGUGAUGA AGC@LB@ ||||| |||||:| |:|||||| |||@LB@ CCAUU UUAUUUC UUACUACU UCG@LB@3'-UUU...UACUG AU AA A -5'@LB@ | |@LB@ 29 1@LB@@LB@@LB@Energy -11.89 kcal/mol@LB@Hybridization Energy -19.4278 kcal/mol@LB@Unfolding Energy - mRNA 6.77275 kcal/mol@LB@Unfolding Energy - sRNA 0.766821 kcal/mol@LB@@LB@Position - mRNA 180 -- 210@LB@Position - sRNA 1 -- 28@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 5 -- 11@LB@ |
172 |
0.02805 |
0.531 |
b1912 |
pgsA |
-10.33 |
0.083391 |
160 -- 169 |
52 -- 61 |
phosphatidylglycerophosphate synthetase |
|
_____________159________170\n_____________|__________|\n5'-GUC...GCAAC__________UCUUA...UUG-3'\n______________AUAGGGGUAA\n______________||||||||||\n______________UAUCCCCAUU\n3'-UUU...AACUU__________UGUCU...UCG-5'\n_____________|__________|\n_____________62_________51\n |
163 -- 169 |
52 -- 58 |
-13.9577 kcal/mol |
3.55629 kcal/mol |
0.0747282 kcal/mol |
159 170@LB@ | |@LB@5'-GUC...GCAAC UCUUA...UUG-3'@LB@ AUAGGGGUAA@LB@ ||||||||||@LB@ UAUCCCCAUU@LB@3'-UUU...AACUU UGUCU...UCG-5'@LB@ | |@LB@ 62 51@LB@@LB@@LB@Energy -10.33 kcal/mol@LB@Hybridization Energy -13.9577 kcal/mol@LB@Unfolding Energy - mRNA 3.55629 kcal/mol@LB@Unfolding Energy - sRNA 0.0747282 kcal/mol@LB@@LB@Position - mRNA 160 -- 169@LB@Position - sRNA 52 -- 61@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 52 -- 58@LB@ |
74 |
0.0107 |
0.4523 |
b3385 |
gph |
-12.85 |
0.023515 |
41 -- 77 |
8 -- 48 |
phosphoglycolate phosphatase |
|
_____________40____________________________________________78\n_____________|_____________________________________________|\n5'-ACU...GCUUU_______GACU__________________C_______________ACAAC...UGU-3'\n______________GACAUUC____AGAAGUG___GACGGUGG___GUGAAG___GUGA\n______________|||||||____||||:||___||||||::___:|:|||___:|||\n______________CUGUAAG____UCUUUAC___CUGCCAUU___UAUUUC___UACU\n3'-UUU...UUUGU__________________UUA________AUU______AAU____ACUAUCG-5'\n_____________|_____________________________________________|\n_____________49____________________________________________7\n |
60 -- 66 |
24 -- 30 |
-29.3756 kcal/mol |
10.2075 kcal/mol |
6.31567 kcal/mol |
40 78@LB@ | |@LB@5'-ACU...GCUUU GACU C ACAAC...UGU-3'@LB@ GACAUUC AGAAGUG GACGGUGG GUGAAG GUGA@LB@ ||||||| ||||:|| ||||||:: :|:||| :|||@LB@ CUGUAAG UCUUUAC CUGCCAUU UAUUUC UACU@LB@3'-UUU...UUUGU UUA AUU AAU ACUAUCG-5'@LB@ | |@LB@ 49 7@LB@@LB@@LB@Energy -12.85 kcal/mol@LB@Hybridization Energy -29.3756 kcal/mol@LB@Unfolding Energy - mRNA 10.2075 kcal/mol@LB@Unfolding Energy - sRNA 6.31567 kcal/mol@LB@@LB@Position - mRNA 41 -- 77@LB@Position - sRNA 8 -- 48@LB@Position Seed - mRNA 60 -- 66@LB@Position Seed - sRNA 24 -- 30@LB@ |
175 |
0.0283 |
0.531 |
b2048 |
cpsG |
-16.42 |
0.002969 |
89 -- 138 |
17 -- 58 |
phosphomannomutase |
|
_____________88___________________________________________________139\n_____________|____________________________________________________|\n5'-GGG...CGGAC___U_______UC_________C________CGAAACC______________CGACA...GCG-3'\n______________GGG_GUAAACG__GCA_UCAGG_AAUGAAUG_______GCGGU_GUAAAUAA\n______________|||_||||||:__:||_||||:_||||||||_______:||||_:|||||||\n______________CCC_CAUUUGU__UGU_AGUCU_UUACUUAC_______UGCCA_UAUUUAUU\n3'-UUU...UUUAU___________C____A__________________________U________UCAAU...UCG-5'\n_____________|____________________________________________________|\n_____________59___________________________________________________16\n |
132 -- 138 |
17 -- 23 |
-37.1596 kcal/mol |
14.4139 kcal/mol |
6.32276 kcal/mol |
88 139@LB@ | |@LB@5'-GGG...CGGAC U UC C CGAAACC CGACA...GCG-3'@LB@ GGG GUAAACG GCA UCAGG AAUGAAUG GCGGU GUAAAUAA@LB@ ||| ||||||: :|| ||||: |||||||| :|||| :|||||||@LB@ CCC CAUUUGU UGU AGUCU UUACUUAC UGCCA UAUUUAUU@LB@3'-UUU...UUUAU C A U UCAAU...UCG-5'@LB@ | |@LB@ 59 16@LB@@LB@@LB@Energy -16.42 kcal/mol@LB@Hybridization Energy -37.1596 kcal/mol@LB@Unfolding Energy - mRNA 14.4139 kcal/mol@LB@Unfolding Energy - sRNA 6.32276 kcal/mol@LB@@LB@Position - mRNA 89 -- 138@LB@Position - sRNA 17 -- 58@LB@Position Seed - mRNA 132 -- 138@LB@Position Seed - sRNA 17 -- 23@LB@ |
48 |
0.005342 |
0.3653 |
b3380 |
yhfW |
-15.20 |
0.006283 |
218 -- 233 |
1 -- 15 |
phosphopentomutase-related metalloenzyme superfamily protein |
|
_____________217______________234\n_____________|________________|\n5'-CUC...GUGGU________U_______UUUGG...GUG-3'\n______________GUUAGUGA_UGAUAGC\n______________||||:|||_|||||||\n______________CAAUUACU_ACUAUCG\n3'-UUU...UAUUU________________-5'\n_____________|_______________|\n_____________16______________1\n |
227 -- 233 |
1 -- 7 |
-17.7091 kcal/mol |
2.46465 kcal/mol |
0.0474282 kcal/mol |
217 234@LB@ | |@LB@5'-CUC...GUGGU U UUUGG...GUG-3'@LB@ GUUAGUGA UGAUAGC@LB@ ||||:||| |||||||@LB@ CAAUUACU ACUAUCG@LB@3'-UUU...UAUUU -5'@LB@ | |@LB@ 16 1@LB@@LB@@LB@Energy -15.20 kcal/mol@LB@Hybridization Energy -17.7091 kcal/mol@LB@Unfolding Energy - mRNA 2.46465 kcal/mol@LB@Unfolding Energy - sRNA 0.0474282 kcal/mol@LB@@LB@Position - mRNA 218 -- 233@LB@Position - sRNA 1 -- 15@LB@Position Seed - mRNA 227 -- 233@LB@Position Seed - sRNA 1 -- 7@LB@ |
36 |
0.003415 |
0.3114 |
b1849 |
purT |
-10.41 |
0.080237 |
8 -- 43 |
29 -- 56 |
phosphoribosylglycinamide formyltransferase 2 |
|
_____________7_____________________________________44\n_____________|_____________________________________|\n____5'-UUUUGCU_______________UCUCUUCGCCCUCAC_______UACGU...GUC-3'\n______________GGUAAAC_GACAUUU_______________GAAUGAC\n______________|||||||_||||||:_______________|||||||\n______________CCAUUUG_CUGUAAG_______________CUUACUG\n3'-UUU...UAUCC_______U_______UCUUUA________________CCAUU...UCG-5'\n_____________|_____________________________________|\n_____________57____________________________________28\n |
37 -- 43 |
29 -- 35 |
-21.896 kcal/mol |
5.20104 kcal/mol |
6.28612 kcal/mol |
7 44@LB@ | |@LB@ 5'-UUUUGCU UCUCUUCGCCCUCAC UACGU...GUC-3'@LB@ GGUAAAC GACAUUU GAAUGAC@LB@ ||||||| ||||||: |||||||@LB@ CCAUUUG CUGUAAG CUUACUG@LB@3'-UUU...UAUCC U UCUUUA CCAUU...UCG-5'@LB@ | |@LB@ 57 28@LB@@LB@@LB@Energy -10.41 kcal/mol@LB@Hybridization Energy -21.896 kcal/mol@LB@Unfolding Energy - mRNA 5.20104 kcal/mol@LB@Unfolding Energy - sRNA 6.28612 kcal/mol@LB@@LB@Position - mRNA 8 -- 43@LB@Position - sRNA 29 -- 56@LB@Position Seed - mRNA 37 -- 43@LB@Position Seed - sRNA 29 -- 35@LB@ |
20 |
0.0009027 |
0.1482 |
b2696 |
csrA |
-13.42 |
0.017327 |
268 -- 280 |
48 -- 60 |
pleiotropic regulatory protein for carbon source metabolism |
|
_____________267___________281\n_____________|_____________|\n5'-CGG...AGUUU__________G__CAACC...GCG-3'\n______________UAGGGGUAAA_GG\n______________||||||||||_:|\n______________AUCCCCAUUU_UC\n3'-UUU...ACUUU__________G__UGUAA...UCG-5'\n_____________|_____________|\n_____________61____________47\n |
271 -- 277 |
51 -- 57 |
-17.9026 kcal/mol |
2.43021 kcal/mol |
2.05446 kcal/mol |
267 281@LB@ | |@LB@5'-CGG...AGUUU G CAACC...GCG-3'@LB@ UAGGGGUAAA GG@LB@ |||||||||| :|@LB@ AUCCCCAUUU UC@LB@3'-UUU...ACUUU G UGUAA...UCG-5'@LB@ | |@LB@ 61 47@LB@@LB@@LB@Energy -13.42 kcal/mol@LB@Hybridization Energy -17.9026 kcal/mol@LB@Unfolding Energy - mRNA 2.43021 kcal/mol@LB@Unfolding Energy - sRNA 2.05446 kcal/mol@LB@@LB@Position - mRNA 268 -- 280@LB@Position - sRNA 48 -- 60@LB@Position Seed - mRNA 271 -- 277@LB@Position Seed - sRNA 51 -- 57@LB@ |
59 |
0.008416 |
0.4523 |
b0566 |
envY |
-9.46 |
0.123665 |
249 -- 263 |
50 -- 64 |
porin thermoregulatory transcriptional activator |
b1499 b0564 b3515 b4116 b3516 |
_____________248_____________264\n_____________|_______________|\n5'-GGC...AAAAA_______A_______GUCAA...ACU-3'\n______________GAGGUAG_GGUAAGC\n______________||::|||_|||||:|\n______________CUUUAUC_CCAUUUG\n3'-UUU...GCCAA_______C_______UCUGU...UCG-5'\n_____________|_______________|\n_____________65______________49\n |
257 -- 263 |
50 -- 56 |
-15.2892 kcal/mol |
5.08919 kcal/mol |
0.736811 kcal/mol |
248 264@LB@ | |@LB@5'-GGC...AAAAA A GUCAA...ACU-3'@LB@ GAGGUAG GGUAAGC@LB@ ||::||| |||||:|@LB@ CUUUAUC CCAUUUG@LB@3'-UUU...GCCAA C UCUGU...UCG-5'@LB@ | |@LB@ 65 49@LB@@LB@@LB@Energy -9.46 kcal/mol@LB@Hybridization Energy -15.2892 kcal/mol@LB@Unfolding Energy - mRNA 5.08919 kcal/mol@LB@Unfolding Energy - sRNA 0.736811 kcal/mol@LB@@LB@Position - mRNA 249 -- 263@LB@Position - sRNA 50 -- 64@LB@Position Seed - mRNA 257 -- 263@LB@Position Seed - sRNA 50 -- 56@LB@ |