18 |
0.0008759 |
0.1482 |
b3626 |
waaR |
-11.62 |
0.044565 |
224 -- 238 |
11 -- 25 |
lipopolysaccharide 1 2-glucosyltransferase; UDP-glucose:(glucosyl)LPS alpha-1 2-glucosyltransferase |
|
_____________223_____________239\n_____________|_______________|\n5'-UGG...AUAGA_______________AGCCU...GUG-3'\n______________GAUAGAUAAAGUUAA\n______________:|||:||||||||||\n______________UUAUUUAUUUCAAUU\n3'-UUU...UGCCA_______________ACUAC...UCG-5'\n_____________|_______________|\n_____________26______________10\n |
232 -- 238 |
11 -- 17 |
-12.9968 kcal/mol |
1.27318 kcal/mol |
0.10636 kcal/mol |
223 239@LB@ | |@LB@5'-UGG...AUAGA AGCCU...GUG-3'@LB@ GAUAGAUAAAGUUAA@LB@ :|||:||||||||||@LB@ UUAUUUAUUUCAAUU@LB@3'-UUU...UGCCA ACUAC...UCG-5'@LB@ | |@LB@ 26 10@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -12.9968 kcal/mol@LB@Unfolding Energy - mRNA 1.27318 kcal/mol@LB@Unfolding Energy - sRNA 0.10636 kcal/mol@LB@@LB@Position - mRNA 224 -- 238@LB@Position - sRNA 11 -- 25@LB@Position Seed - mRNA 232 -- 238@LB@Position Seed - sRNA 11 -- 17@LB@ |
142 |
0.02395 |
0.526 |
b0192 |
nlpE |
-14.44 |
0.009771 |
167 -- 226 |
1 -- 55 |
lipoprotein involved with copper homeostasis and adhesion |
|
_____________166_______________________________________________________________227\n_____________|_________________________________________________________________|\n5'-UCA...GCAAA___C_______G________AAAAAGAAG____G________AA_______C____A____C___GAUGG...CGC-3'\n______________GUG_GCAG_CG_UCGGGAAU_________GAAU_GAUGGUGA_____AAAG__GAU_GUGA_AGC\n______________||:_:|||_|:_||:|:|||_________||||_||:|||:|_____||||__:||_:|||_|||\n______________CAU_UGUC_GU_AGUCUUUA_________CUUA_CUGCCAUU_____UUUC__UUA_UACU_UCG\n3'-UUU...AUCCC___U____U__A______________________________AUUUA____AA___C____A___-5'\n_____________|________________________________________________________________|\n_____________56_______________________________________________________________1\n |
201 -- 207 |
24 -- 30 |
-31.0616 kcal/mol |
10.2836 kcal/mol |
6.33758 kcal/mol |
166 227@LB@ | |@LB@5'-UCA...GCAAA C G AAAAAGAAG G AA C A C GAUGG...CGC-3'@LB@ GUG GCAG CG UCGGGAAU GAAU GAUGGUGA AAAG GAU GUGA AGC@LB@ ||: :||| |: ||:|:||| |||| ||:|||:| |||| :|| :||| |||@LB@ CAU UGUC GU AGUCUUUA CUUA CUGCCAUU UUUC UUA UACU UCG@LB@3'-UUU...AUCCC U U A AUUUA AA C A -5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -14.44 kcal/mol@LB@Hybridization Energy -31.0616 kcal/mol@LB@Unfolding Energy - mRNA 10.2836 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 167 -- 226@LB@Position - sRNA 1 -- 55@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 24 -- 30@LB@ |
140 |
0.02319 |
0.526 |
b3615 |
waaH |
-10.58 |
0.073933 |
178 -- 212 |
1 -- 47 |
LPS(HepIII)-glucuronic acid glycosyltransferase |
|
_____________177______________________________________________213\n_____________|________________________________________________|\n5'-GAU...GGAUA____________C____U_______UU________________AC___ACCAA...GGA-3'\n______________AC_UUCAGAGGU____G_CGGUAAU___________AUGAUGA__AGC\n______________||_||||||::|____|_|||||||___________|||||||__|||\n______________UG_AAGUCUUUA____C_GCCAUUA___________UACUACU__UCG\n3'-UUU...UUGUC__U_________CUUA_U_______UUUAUUUCAAU_______A____-5'\n_____________|_______________________________________________|\n_____________48______________________________________________1\n |
201 -- 207 |
5 -- 11 |
-24.9941 kcal/mol |
8.09222 kcal/mol |
6.32011 kcal/mol |
177 213@LB@ | |@LB@5'-GAU...GGAUA C U UU AC ACCAA...GGA-3'@LB@ AC UUCAGAGGU G CGGUAAU AUGAUGA AGC@LB@ || ||||||::| | ||||||| ||||||| |||@LB@ UG AAGUCUUUA C GCCAUUA UACUACU UCG@LB@3'-UUU...UUGUC U CUUA U UUUAUUUCAAU A -5'@LB@ | |@LB@ 48 1@LB@@LB@@LB@Energy -10.58 kcal/mol@LB@Hybridization Energy -24.9941 kcal/mol@LB@Unfolding Energy - mRNA 8.09222 kcal/mol@LB@Unfolding Energy - sRNA 6.32011 kcal/mol@LB@@LB@Position - mRNA 178 -- 212@LB@Position - sRNA 1 -- 47@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 5 -- 11@LB@ |
40 |
0.004127 |
0.3349 |
b1659 |
ydhB |
-12.78 |
0.024485 |
130 -- 177 |
1 -- 61 |
LysR family putative transcriptional regulator |
|
_____________129_______________________________________________________________178\n_____________|_________________________________________________________________|\n5'-CGA...AAAGU______A_____AU_____________________________UU_______________C____UUCAA...UCA-3'\n______________GUAGGG_GUGAA__UAG_UGUU_____GUGAA__ACGGUAAUA___________UGAUGA_UGGU\n______________:|||||_||:||__:||_::||_____:||||__|||||||||___________||||||_|:|:\n______________UAUCCC_CAUUU__GUC_GUAA_____UACUU__UGCCAUUAU___________ACUACU_AUCG\n3'-UUU...AACUU_________________U____GUCUU_____AC_________UUAUUUCAAUU___________-5'\n_____________|________________________________________________________________|\n_____________62_______________________________________________________________1\n |
158 -- 164 |
22 -- 28 |
-31.01 kcal/mol |
11.8895 kcal/mol |
6.344 kcal/mol |
129 178@LB@ | |@LB@5'-CGA...AAAGU A AU UU C UUCAA...UCA-3'@LB@ GUAGGG GUGAA UAG UGUU GUGAA ACGGUAAUA UGAUGA UGGU@LB@ :||||| ||:|| :|| ::|| :|||| ||||||||| |||||| |:|:@LB@ UAUCCC CAUUU GUC GUAA UACUU UGCCAUUAU ACUACU AUCG@LB@3'-UUU...AACUU U GUCUU AC UUAUUUCAAUU -5'@LB@ | |@LB@ 62 1@LB@@LB@@LB@Energy -12.78 kcal/mol@LB@Hybridization Energy -31.01 kcal/mol@LB@Unfolding Energy - mRNA 11.8895 kcal/mol@LB@Unfolding Energy - sRNA 6.344 kcal/mol@LB@@LB@Position - mRNA 130 -- 177@LB@Position - sRNA 1 -- 61@LB@Position Seed - mRNA 158 -- 164@LB@Position Seed - sRNA 22 -- 28@LB@ |
69 |
0.009861 |
0.4523 |
b0879 |
macB |
-12.35 |
0.030572 |
144 -- 182 |
1 -- 59 |
macrolide ABC transporter peremase/ATPase |
|
_____________143___________________________________________________________183\n_____________|_____________________________________________________________|\n5'-AAU...GUCAA____CUUG_____________________________________________________CAAAC...CGG-3'\n______________AGGG____AAGCGGGC_______GAUGAA_G_UGGUGAU____________UGGUGA_GGC\n______________||||____||:|:|:|_______:|||||_|_:|||:||____________||:|||_:||\n______________UCCC____UUUGUCUG_______UUACUU_C_GCCAUUA____________ACUACU_UCG\n3'-UUU...CUUUA____CA__________UAAGUCU______A_U_______UUUAUUUCAAUU______A___-5'\n_____________|____________________________________________________________|\n_____________60___________________________________________________________1\n |
167 -- 173 |
23 -- 29 |
-29.0987 kcal/mol |
10.4067 kcal/mol |
6.33764 kcal/mol |
143 183@LB@ | |@LB@5'-AAU...GUCAA CUUG CAAAC...CGG-3'@LB@ AGGG AAGCGGGC GAUGAA G UGGUGAU UGGUGA GGC@LB@ |||| ||:|:|:| :||||| | :|||:|| ||:||| :||@LB@ UCCC UUUGUCUG UUACUU C GCCAUUA ACUACU UCG@LB@3'-UUU...CUUUA CA UAAGUCU A U UUUAUUUCAAUU A -5'@LB@ | |@LB@ 60 1@LB@@LB@@LB@Energy -12.35 kcal/mol@LB@Hybridization Energy -29.0987 kcal/mol@LB@Unfolding Energy - mRNA 10.4067 kcal/mol@LB@Unfolding Energy - sRNA 6.33764 kcal/mol@LB@@LB@Position - mRNA 144 -- 182@LB@Position - sRNA 1 -- 59@LB@Position Seed - mRNA 167 -- 173@LB@Position Seed - sRNA 23 -- 29@LB@ |
29 |
0.00201 |
0.2275 |
b1479 |
maeA |
-13.16 |
0.019904 |
170 -- 200 |
29 -- 59 |
malate dehydrogenase decarboxylating NAD-requiring; malic enzyme |
|
_____________169_________________________________201\n_____________|___________________________________|\n5'-UAG...CCCCC___________________AAAAA___________AUGGA...GCA-3'\n______________AGGG____AUGGAUAUUCA_____GAGUGAGUGAC\n______________||||____|::||:|||||_____:|:|||:||||\n______________UCCC____UGUCUGUAAGU_____UUUACUUACUG\n3'-UUU...CUUUA____CAUU___________C_______________CCAUU...UCG-5'\n_____________|___________________________________|\n_____________60__________________________________28\n |
194 -- 200 |
29 -- 35 |
-27.1811 kcal/mol |
7.73175 kcal/mol |
6.28641 kcal/mol |
169 201@LB@ | |@LB@5'-UAG...CCCCC AAAAA AUGGA...GCA-3'@LB@ AGGG AUGGAUAUUCA GAGUGAGUGAC@LB@ |||| |::||:||||| :|:|||:||||@LB@ UCCC UGUCUGUAAGU UUUACUUACUG@LB@3'-UUU...CUUUA CAUU C CCAUU...UCG-5'@LB@ | |@LB@ 60 28@LB@@LB@@LB@Energy -13.16 kcal/mol@LB@Hybridization Energy -27.1811 kcal/mol@LB@Unfolding Energy - mRNA 7.73175 kcal/mol@LB@Unfolding Energy - sRNA 6.28641 kcal/mol@LB@@LB@Position - mRNA 170 -- 200@LB@Position - sRNA 29 -- 59@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 29 -- 35@LB@ |
66 |
0.009484 |
0.4523 |
b4034 |
malE |
-12.98 |
0.021943 |
73 -- 123 |
2 -- 55 |
maltose transporter subunit |
|
_____________72_____________________________________________________124\n_____________|______________________________________________________|\n5'-AGG...AUUCU_________G_____CACAAAGC_________GGC______GC__G__G_____AAAGA...UGG-3'\n______________GU_AACAGA_A_UCA_________GACGGUGG___GUAGGG__AA_GA_GAUGG\n______________||_||||||_|_|||_________||||||::___:||::|__||_||_|||:|\n______________CA_UUGUCU_U_AGU_________CUGCCAUU___UAUUUC__UU_CU_CUAUC\n3'-UUU...AUCCC__U______G_A___CUUUACUUA________AUU______AA__A__A_____G-5'\n_____________|______________________________________________________|\n_____________56_____________________________________________________1\n |
95 -- 101 |
24 -- 30 |
-30.2337 kcal/mol |
10.9143 kcal/mol |
6.33752 kcal/mol |
72 124@LB@ | |@LB@5'-AGG...AUUCU G CACAAAGC GGC GC G G AAAGA...UGG-3'@LB@ GU AACAGA A UCA GACGGUGG GUAGGG AA GA GAUGG@LB@ || |||||| | ||| ||||||:: :||::| || || |||:|@LB@ CA UUGUCU U AGU CUGCCAUU UAUUUC UU CU CUAUC@LB@3'-UUU...AUCCC U G A CUUUACUUA AUU AA A A G-5'@LB@ | |@LB@ 56 1@LB@@LB@@LB@Energy -12.98 kcal/mol@LB@Hybridization Energy -30.2337 kcal/mol@LB@Unfolding Energy - mRNA 10.9143 kcal/mol@LB@Unfolding Energy - sRNA 6.33752 kcal/mol@LB@@LB@Position - mRNA 73 -- 123@LB@Position - sRNA 2 -- 55@LB@Position Seed - mRNA 95 -- 101@LB@Position Seed - sRNA 24 -- 30@LB@ |
63 |
0.008816 |
0.4523 |
b3600 |
mtlD |
-11.23 |
0.053963 |
184 -- 208 |
1 -- 23 |
mannitol-1-phosphate dehydrogenase NAD-dependent |
|
_____________183_______________________209\n_____________|_________________________|\n5'-GUG...AACAU___UG_________ACU____A___AUUAC...AUC-3'\n______________UGA__AAGGUUAAU___AUGA_AGC\n______________|:|__||:||||||___||||_|||\n______________AUU__UUUCAAUUA___UACU_UCG\n3'-UUU...CCAUU___UA_________C______A___-5'\n_____________|________________________|\n_____________24_______________________1\n |
191 -- 197 |
10 -- 16 |
-14.8386 kcal/mol |
3.50103 kcal/mol |
0.105066 kcal/mol |
183 209@LB@ | |@LB@5'-GUG...AACAU UG ACU A AUUAC...AUC-3'@LB@ UGA AAGGUUAAU AUGA AGC@LB@ |:| ||:|||||| |||| |||@LB@ AUU UUUCAAUUA UACU UCG@LB@3'-UUU...CCAUU UA C A -5'@LB@ | |@LB@ 24 1@LB@@LB@@LB@Energy -11.23 kcal/mol@LB@Hybridization Energy -14.8386 kcal/mol@LB@Unfolding Energy - mRNA 3.50103 kcal/mol@LB@Unfolding Energy - sRNA 0.105066 kcal/mol@LB@@LB@Position - mRNA 184 -- 208@LB@Position - sRNA 1 -- 23@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 10 -- 16@LB@ |
194 |
0.03269 |
0.5507 |
b2049 |
cpsB |
-9.94 |
0.099932 |
179 -- 235 |
1 -- 54 |
mannose-1-phosphate guanyltransferase |
|
_____________178________________________________________________________236\n_____________|__________________________________________________________|\n5'-ACA...AUUUA___________________AAUU______CA__CGAAACUCUAUCC___U________AGGUG...GCC-3'\n______________UAAAU_GAUAUUCGGGGAU____AUGGCG__GU_____________AGU_GUGAUGGC\n______________||||:_||:||||:|::||____|||:||__||_____________|:|_:||||:||\n______________AUUUG_CUGUAAGUCUUUA____UACUGC__CA_____________UUA_UACUAUCG\n3'-UUU...UCCCC_____U_____________CU____________UUAUUUAUUUCAA___C________-5'\n_____________|_________________________________________________________|\n_____________55________________________________________________________1\n |
229 -- 235 |
1 -- 7 |
-30.0746 kcal/mol |
13.8011 kcal/mol |
6.33758 kcal/mol |
178 236@LB@ | |@LB@5'-ACA...AUUUA AAUU CA CGAAACUCUAUCC U AGGUG...GCC-3'@LB@ UAAAU GAUAUUCGGGGAU AUGGCG GU AGU GUGAUGGC@LB@ ||||: ||:||||:|::|| |||:|| || |:| :||||:||@LB@ AUUUG CUGUAAGUCUUUA UACUGC CA UUA UACUAUCG@LB@3'-UUU...UCCCC U CU UUAUUUAUUUCAA C -5'@LB@ | |@LB@ 55 1@LB@@LB@@LB@Energy -9.94 kcal/mol@LB@Hybridization Energy -30.0746 kcal/mol@LB@Unfolding Energy - mRNA 13.8011 kcal/mol@LB@Unfolding Energy - sRNA 6.33758 kcal/mol@LB@@LB@Position - mRNA 179 -- 235@LB@Position - sRNA 1 -- 54@LB@Position Seed - mRNA 229 -- 235@LB@Position Seed - sRNA 1 -- 7@LB@ |
167 |
0.02708 |
0.531 |
b3705 |
yidC |
-10.20 |
0.088356 |
85 -- 115 |
24 -- 58 |
membrane protein insertase |
|
_____________84____________________________________116\n_____________|_____________________________________|\n5'-CGC...GGUUU__A____UAAA_____GU_________U_________AACGC...CCC-3'\n______________GG_GUGA____AGGCA________UGG_UGACGGUGA\n______________||_||:|____||:||________||:_|||||||:|\n______________CC_CAUU____UCUGU________ACU_ACUGCCAUU\n3'-UUU...UUUAU__C____UG_______AAGUCUUU___U_________AUUUA...UCG-5'\n_____________|_____________________________________|\n_____________59____________________________________23\n |
109 -- 115 |
24 -- 30 |
-23.9536 kcal/mol |
7.45063 kcal/mol |
6.30019 kcal/mol |
84 116@LB@ | |@LB@5'-CGC...GGUUU A UAAA GU U AACGC...CCC-3'@LB@ GG GUGA AGGCA UGG UGACGGUGA@LB@ || ||:| ||:|| ||: |||||||:|@LB@ CC CAUU UCUGU ACU ACUGCCAUU@LB@3'-UUU...UUUAU C UG AAGUCUUU U AUUUA...UCG-5'@LB@ | |@LB@ 59 23@LB@@LB@@LB@Energy -10.20 kcal/mol@LB@Hybridization Energy -23.9536 kcal/mol@LB@Unfolding Energy - mRNA 7.45063 kcal/mol@LB@Unfolding Energy - sRNA 6.30019 kcal/mol@LB@@LB@Position - mRNA 85 -- 115@LB@Position - sRNA 24 -- 58@LB@Position Seed - mRNA 109 -- 115@LB@Position Seed - sRNA 24 -- 30@LB@ |