| 147 |
0.02463 |
0.526 |
b2830 |
rppH |
-8.72 |
0.170707 |
205 -- 218 |
1 -- 14 |
RNA pyrophosphohydrolase |
|
_____________204____________219\n_____________|______________|\n5'-UUC...GGUGA_______C______UACCG...GGC-3'\n______________UUGAUGA_GAUGGC\n______________||:||||_|||:||\n______________AAUUACU_CUAUCG\n3'-UUU...AUUUC_______A______-5'\n_____________|_____________|\n_____________15____________1\n |
205 -- 211 |
8 -- 14 |
-13.7427 kcal/mol |
4.97796 kcal/mol |
0.0473494 kcal/mol |
204 219@LB@ | |@LB@5'-UUC...GGUGA C UACCG...GGC-3'@LB@ UUGAUGA GAUGGC@LB@ ||:|||| |||:||@LB@ AAUUACU CUAUCG@LB@3'-UUU...AUUUC A -5'@LB@ | |@LB@ 15 1@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -13.7427 kcal/mol@LB@Unfolding Energy - mRNA 4.97796 kcal/mol@LB@Unfolding Energy - sRNA 0.0473494 kcal/mol@LB@@LB@Position - mRNA 205 -- 218@LB@Position - sRNA 1 -- 14@LB@Position Seed - mRNA 205 -- 211@LB@Position Seed - sRNA 8 -- 14@LB@ |
| 138 |
0.02287 |
0.526 |
b0081 |
mraZ |
-12.90 |
0.022954 |
180 -- 193 |
52 -- 64 |
RsmH methytransferase inhibitor |
|
_____________179____________194\n_____________|______________|\n5'-GAU...AAGUG_____A________GGCUG...AAA-3'\n______________GGAAU_AGGGGUGA\n______________|:|||_||||||:|\n______________CUUUA_UCCCCAUU\n3'-UUU...GCCAA______________UGUCU...UCG-5'\n_____________|______________|\n_____________65_____________51\n |
187 -- 193 |
52 -- 58 |
-14.7021 kcal/mol |
1.72638 kcal/mol |
0.0778991 kcal/mol |
179 194@LB@ | |@LB@5'-GAU...AAGUG A GGCUG...AAA-3'@LB@ GGAAU AGGGGUGA@LB@ |:||| ||||||:|@LB@ CUUUA UCCCCAUU@LB@3'-UUU...GCCAA UGUCU...UCG-5'@LB@ | |@LB@ 65 51@LB@@LB@@LB@Energy -12.90 kcal/mol@LB@Hybridization Energy -14.7021 kcal/mol@LB@Unfolding Energy - mRNA 1.72638 kcal/mol@LB@Unfolding Energy - sRNA 0.0778991 kcal/mol@LB@@LB@Position - mRNA 180 -- 193@LB@Position - sRNA 52 -- 64@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 32 |
0.003146 |
0.3086 |
b1553 |
rzpQ |
-12.95 |
0.022283 |
187 -- 223 |
23 -- 60 |
Rz-like protein Qin prophage |
|
_____________186______________________________________224\n_____________|________________________________________|\n5'-UAU...CCUGC______AUA______UGAA_____UAUUC___________UUUUC...GUG-3'\n______________UGGGGG___GAACAG____UCAGA________AUGGUGAU\n______________|:||||___:|||||____|||||________|:|||:||\n______________AUCCCC___UUUGUC____AGUCU________UGCCAUUA\n3'-UUU...ACUUU______A________UGUA_____UUACUUAC________UUUAU...UCG-5'\n_____________|________________________________________|\n_____________61_______________________________________22\n |
217 -- 223 |
23 -- 29 |
-27.4351 kcal/mol |
8.1631 kcal/mol |
6.31885 kcal/mol |
186 224@LB@ | |@LB@5'-UAU...CCUGC AUA UGAA UAUUC UUUUC...GUG-3'@LB@ UGGGGG GAACAG UCAGA AUGGUGAU@LB@ |:|||| :||||| ||||| |:|||:||@LB@ AUCCCC UUUGUC AGUCU UGCCAUUA@LB@3'-UUU...ACUUU A UGUA UUACUUAC UUUAU...UCG-5'@LB@ | |@LB@ 61 22@LB@@LB@@LB@Energy -12.95 kcal/mol@LB@Hybridization Energy -27.4351 kcal/mol@LB@Unfolding Energy - mRNA 8.1631 kcal/mol@LB@Unfolding Energy - sRNA 6.31885 kcal/mol@LB@@LB@Position - mRNA 187 -- 223@LB@Position - sRNA 23 -- 60@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 174 |
0.02825 |
0.531 |
b2154 |
yeiG |
-9.96 |
0.098977 |
140 -- 169 |
15 -- 51 |
S-formylglutathione hydrolase |
|
_____________139_____________________________________170\n_____________|_______________________________________|\n5'-GCU...UACUC____C________________AA______U_________AAAUU...UUC-3'\n______________ACAG_ACAU_______UGAAU__ACGGUA___GAUGAAG\n______________||||_||||_______|||||__||||||___:||:|||\n______________UGUC_UGUA_______ACUUA__UGCCAU___UUAUUUC\n3'-UUU...CCAUU_________AGUCUUU_____C_______UAU_______AAUUA...UCG-5'\n_____________|_______________________________________|\n_____________52______________________________________14\n |
163 -- 169 |
15 -- 21 |
-20.0225 kcal/mol |
3.74261 kcal/mol |
6.32297 kcal/mol |
139 170@LB@ | |@LB@5'-GCU...UACUC C AA U AAAUU...UUC-3'@LB@ ACAG ACAU UGAAU ACGGUA GAUGAAG@LB@ |||| |||| ||||| |||||| :||:|||@LB@ UGUC UGUA ACUUA UGCCAU UUAUUUC@LB@3'-UUU...CCAUU AGUCUUU C UAU AAUUA...UCG-5'@LB@ | |@LB@ 52 14@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -20.0225 kcal/mol@LB@Unfolding Energy - mRNA 3.74261 kcal/mol@LB@Unfolding Energy - sRNA 6.32297 kcal/mol@LB@@LB@Position - mRNA 140 -- 169@LB@Position - sRNA 15 -- 51@LB@Position Seed - mRNA 163 -- 169@LB@Position Seed - sRNA 15 -- 21@LB@ |
| 129 |
0.02061 |
0.5217 |
b0633 |
rlpA |
-9.57 |
0.117965 |
261 -- 273 |
1 -- 12 |
septal ring protein suppressor of prc minor lipoprotein |
|
_____________260___________274\n_____________|_____________|\n5'-CGG...CAAGC_________C___AACAG...CUG-3'\n______________GAUGAUGGU_AGC\n______________:||||||:|_|||\n______________UUACUACUA_UCG\n3'-UUU...UUCAA_____________-5'\n_____________|____________|\n_____________13___________1\n |
263 -- 269 |
4 -- 10 |
-13.3317 kcal/mol |
3.7231 kcal/mol |
0.0394463 kcal/mol |
260 274@LB@ | |@LB@5'-CGG...CAAGC C AACAG...CUG-3'@LB@ GAUGAUGGU AGC@LB@ :||||||:| |||@LB@ UUACUACUA UCG@LB@3'-UUU...UUCAA -5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -9.57 kcal/mol@LB@Hybridization Energy -13.3317 kcal/mol@LB@Unfolding Energy - mRNA 3.7231 kcal/mol@LB@Unfolding Energy - sRNA 0.0394463 kcal/mol@LB@@LB@Position - mRNA 261 -- 273@LB@Position - sRNA 1 -- 12@LB@Position Seed - mRNA 263 -- 269@LB@Position Seed - sRNA 4 -- 10@LB@ |
| 61 |
0.008575 |
0.4523 |
b3464 |
ftsY |
-13.38 |
0.017655 |
71 -- 119 |
2 -- 50 |
Signal Recognition Particle (SRP) receptor |
|
_____________70__________________________________________________120\n_____________|___________________________________________________|\n5'-CCC...UCCGC______ACACAUACUUGCA_______AU______U________________ACUAU...CGG-3'\n______________CAGAUA_____________GGCGGUG__GUGAAU_AAGUUAA__GUGAUAG\n______________||||:|_____________|:||||:__:|:|||_|||||||__:||||||\n______________GUCUGU_____________CUGCCAU__UAUUUA_UUCAAUU__UACUAUC\n3'-UUU...CAUUU______AAGUCUUUACUUA_______________U_______AC_______G-5'\n_____________|___________________________________________________|\n_____________51__________________________________________________1\n |
113 -- 119 |
2 -- 8 |
-30.4135 kcal/mol |
10.695 kcal/mol |
6.33478 kcal/mol |
70 120@LB@ | |@LB@5'-CCC...UCCGC ACACAUACUUGCA AU U ACUAU...CGG-3'@LB@ CAGAUA GGCGGUG GUGAAU AAGUUAA GUGAUAG@LB@ ||||:| |:||||: :|:||| ||||||| :||||||@LB@ GUCUGU CUGCCAU UAUUUA UUCAAUU UACUAUC@LB@3'-UUU...CAUUU AAGUCUUUACUUA U AC G-5'@LB@ | |@LB@ 51 1@LB@@LB@@LB@Energy -13.38 kcal/mol@LB@Hybridization Energy -30.4135 kcal/mol@LB@Unfolding Energy - mRNA 10.695 kcal/mol@LB@Unfolding Energy - sRNA 6.33478 kcal/mol@LB@@LB@Position - mRNA 71 -- 119@LB@Position - sRNA 2 -- 50@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 14 |
0.0005823 |
0.1358 |
b4348 |
hsdS |
-17.02 |
0.002033 |
190 -- 210 |
27 -- 58 |
specificity determinant for hsdM and hsdR |
|
_____________189______________________________211\n_____________|________________________________|\n5'-CUG...UUGGU________________________________GGAAA...UAA-3'\n______________GGGGUGA__________AGGAAUGAGUG_CGG\n______________|||||:|__________||:|||||:||_|||\n______________CCCCAUU__________UCUUUACUUAC_GCC\n3'-UUU...UUUAU_______UGUCUGUAAG___________U___AUUAU...UCG-5'\n_____________|________________________________|\n_____________59_______________________________26\n |
190 -- 196 |
52 -- 58 |
-27.0928 kcal/mol |
3.78881 kcal/mol |
6.28755 kcal/mol |
189 211@LB@ | |@LB@5'-CUG...UUGGU GGAAA...UAA-3'@LB@ GGGGUGA AGGAAUGAGUG CGG@LB@ |||||:| ||:|||||:|| |||@LB@ CCCCAUU UCUUUACUUAC GCC@LB@3'-UUU...UUUAU UGUCUGUAAG U AUUAU...UCG-5'@LB@ | |@LB@ 59 26@LB@@LB@@LB@Energy -17.02 kcal/mol@LB@Hybridization Energy -27.0928 kcal/mol@LB@Unfolding Energy - mRNA 3.78881 kcal/mol@LB@Unfolding Energy - sRNA 6.28755 kcal/mol@LB@@LB@Position - mRNA 190 -- 210@LB@Position - sRNA 27 -- 58@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 52 -- 58@LB@ |
| 181 |
0.02995 |
0.5424 |
b0601 |
ybdM |
-11.52 |
0.046768 |
198 -- 207 |
55 -- 64 |
Spo0J family protein ParB-like nuclease domain |
|
_____________197________208\n_____________|__________|\n5'-UUG...CGUCA__________AUACU...GCA-3'\n______________GGAAUGGGGG\n______________|:|||:||||\n______________CUUUAUCCCC\n3'-UUU...GCCAA__________AUUUG...UCG-5'\n_____________|__________|\n_____________65_________54\n |
201 -- 207 |
55 -- 61 |
-14.9628 kcal/mol |
3.4127 kcal/mol |
0.0291912 kcal/mol |
197 208@LB@ | |@LB@5'-UUG...CGUCA AUACU...GCA-3'@LB@ GGAAUGGGGG@LB@ |:|||:||||@LB@ CUUUAUCCCC@LB@3'-UUU...GCCAA AUUUG...UCG-5'@LB@ | |@LB@ 65 54@LB@@LB@@LB@Energy -11.52 kcal/mol@LB@Hybridization Energy -14.9628 kcal/mol@LB@Unfolding Energy - mRNA 3.4127 kcal/mol@LB@Unfolding Energy - sRNA 0.0291912 kcal/mol@LB@@LB@Position - mRNA 198 -- 207@LB@Position - sRNA 55 -- 64@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 55 -- 61@LB@ |
| 96 |
0.01578 |
0.5059 |
b3283 |
yrdD |
-12.59 |
0.027007 |
10 -- 20 |
2 -- 12 |
ssDNA-binding protein function unknown |
|
_____________9___________21\n_____________|___________|\n5'-AAC...CGUGA___________AGCGA...UUG-3'\n______________AAUGGUGAUAG\n______________||||:||||||\n______________UUACUACUAUC\n3'-UUU...UUCAA___________G-5'\n_____________|___________|\n_____________13__________1\n |
14 -- 20 |
2 -- 8 |
-13.6612 kcal/mol |
1.03146 kcal/mol |
0.0386655 kcal/mol |
9 21@LB@ | |@LB@5'-AAC...CGUGA AGCGA...UUG-3'@LB@ AAUGGUGAUAG@LB@ ||||:||||||@LB@ UUACUACUAUC@LB@3'-UUU...UUCAA G-5'@LB@ | |@LB@ 13 1@LB@@LB@@LB@Energy -12.59 kcal/mol@LB@Hybridization Energy -13.6612 kcal/mol@LB@Unfolding Energy - mRNA 1.03146 kcal/mol@LB@Unfolding Energy - sRNA 0.0386655 kcal/mol@LB@@LB@Position - mRNA 10 -- 20@LB@Position - sRNA 2 -- 12@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 2 -- 8@LB@ |
| 45 |
0.005107 |
0.3601 |
b0435 |
bolA |
-10.01 |
0.096403 |
160 -- 209 |
3 -- 59 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________159________________________________________________________210\n_____________|__________________________________________________________|\n5'-UGA...UUUAA____A___________C____CGU______U___AGG______UUUC___________CGUGA...CCG-3'\n______________AGGG_UGGAU_GACAU_UCAG_______UG_CGG____AGAUA______AUGAUGAUA\n______________||||_|::|:_|||||_||||_______||_|||____|:|||______|||||||||\n______________UCCC_AUUUG_CUGUA_AGUC_______AC_GCC____UUUAU______UACUACUAU\n3'-UUU...CUUUA____C_____U__________UUUACUU__U___AUUA_____UUCAAU_________CG-5'\n_____________|__________________________________________________________|\n_____________60_________________________________________________________2\n |
203 -- 209 |
3 -- 9 |
-31.3101 kcal/mol |
14.9582 kcal/mol |
6.33762 kcal/mol |
159 210@LB@ | |@LB@5'-UGA...UUUAA A C CGU U AGG UUUC CGUGA...CCG-3'@LB@ AGGG UGGAU GACAU UCAG UG CGG AGAUA AUGAUGAUA@LB@ |||| |::|: ||||| |||| || ||| |:||| |||||||||@LB@ UCCC AUUUG CUGUA AGUC AC GCC UUUAU UACUACUAU@LB@3'-UUU...CUUUA C U UUUACUU U AUUA UUCAAU CG-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -10.01 kcal/mol@LB@Hybridization Energy -31.3101 kcal/mol@LB@Unfolding Energy - mRNA 14.9582 kcal/mol@LB@Unfolding Energy - sRNA 6.33762 kcal/mol@LB@@LB@Position - mRNA 160 -- 209@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 3 -- 9@LB@ |
