185 |
0.03847 |
0.6177 |
b0621 |
dcuC |
-6.69 |
0.186516 |
155 -- 171 |
26 -- 48 |
anaerobic C4-dicarboxylate transport |
|
_____________154_____________________172\n_____________|_______________________|\n5'-UGC...GCUUU_______________________UACUU...UCG-3'\n______________AGGAAUUUU______UUAUUAUU\n______________||||||||:______||||||||\n______________UCCUUAAAG______AAUAAUAA\n3'-UUU...GUUUC_________UAAAAA________UACGG...ACA-5'\n_____________|_______________________|\n_____________49______________________25\n |
165 -- 171 |
26 -- 32 |
-10.8714 kcal/mol |
3.1068 kcal/mol |
1.07117 kcal/mol |
154 172@LB@ | |@LB@5'-UGC...GCUUU UACUU...UCG-3'@LB@ AGGAAUUUU UUAUUAUU@LB@ ||||||||: ||||||||@LB@ UCCUUAAAG AAUAAUAA@LB@3'-UUU...GUUUC UAAAAA UACGG...ACA-5'@LB@ | |@LB@ 49 25@LB@@LB@@LB@Energy -6.69 kcal/mol@LB@Hybridization Energy -10.8714 kcal/mol@LB@Unfolding Energy - mRNA 3.1068 kcal/mol@LB@Unfolding Energy - sRNA 1.07117 kcal/mol@LB@@LB@Position - mRNA 155 -- 171@LB@Position - sRNA 26 -- 48@LB@Position Seed - mRNA 165 -- 171@LB@Position Seed - sRNA 26 -- 32@LB@ |
33 |
0.006504 |
0.6129 |
b1937 |
fliE |
-6.45 |
0.207626 |
119 -- 135 |
24 -- 40 |
flagellar basal-body component |
|
_____________118_______________136\n_____________|_________________|\n5'-CUG...AAACC_____________C___UUAGC...GUU-3'\n______________CGUUUUUUUGUUG_UAU\n______________|:|||||||:||:_|||\n______________GUAAAAAAAUAAU_AUA\n3'-UUU...UUAAA_____________A___CGGCA...ACA-5'\n_____________|_________________|\n_____________41________________23\n |
124 -- 130 |
29 -- 35 |
-10.2961 kcal/mol |
2.85244 kcal/mol |
0.998368 kcal/mol |
118 136@LB@ | |@LB@5'-CUG...AAACC C UUAGC...GUU-3'@LB@ CGUUUUUUUGUUG UAU@LB@ |:|||||||:||: |||@LB@ GUAAAAAAAUAAU AUA@LB@3'-UUU...UUAAA A CGGCA...ACA-5'@LB@ | |@LB@ 41 23@LB@@LB@@LB@Energy -6.45 kcal/mol@LB@Hybridization Energy -10.2961 kcal/mol@LB@Unfolding Energy - mRNA 2.85244 kcal/mol@LB@Unfolding Energy - sRNA 0.998368 kcal/mol@LB@@LB@Position - mRNA 119 -- 135@LB@Position - sRNA 24 -- 40@LB@Position Seed - mRNA 124 -- 130@LB@Position Seed - sRNA 29 -- 35@LB@ |
193 |
0.04043 |
0.6177 |
b1180 |
ycgM |
-6.42 |
0.210248 |
289 -- 296 |
47 -- 54 |
putative isomerase/hydrolase |
|
_____________288______297\n_____________|________|\n5'-GAU...ACAUA________AUGG-3'\n______________UUAAAGAG\n______________|:||||||\n______________AGUUUCUC\n3'-UUU...CGGGC________CUUAA...ACA-5'\n_____________|________|\n_____________55_______46\n |
290 -- 296 |
47 -- 53 |
-7.63974 kcal/mol |
0.325787 kcal/mol |
0.897871 kcal/mol |
288 297@LB@ | |@LB@5'-GAU...ACAUA AUGG-3'@LB@ UUAAAGAG@LB@ |:||||||@LB@ AGUUUCUC@LB@3'-UUU...CGGGC CUUAA...ACA-5'@LB@ | |@LB@ 55 46@LB@@LB@@LB@Energy -6.42 kcal/mol@LB@Hybridization Energy -7.63974 kcal/mol@LB@Unfolding Energy - mRNA 0.325787 kcal/mol@LB@Unfolding Energy - sRNA 0.897871 kcal/mol@LB@@LB@Position - mRNA 289 -- 296@LB@Position - sRNA 47 -- 54@LB@Position Seed - mRNA 290 -- 296@LB@Position Seed - sRNA 47 -- 53@LB@ |
93 |
0.01877 |
0.6177 |
b3492 |
yhiN |
-6.30 |
0.220558 |
150 -- 160 |
43 -- 53 |
putative oxidoreductase |
|
_____________149_________161\n_____________|___________|\n5'-CGG...GCGAC__CU_______CUUUA...AUA-3'\n______________CA__GAGGAAU\n______________||__|||||||\n______________GU__CUCCUUA\n3'-UUU...GGGCA__UU_______AAGUA...ACA-5'\n_____________|___________|\n_____________54__________42\n |
154 -- 160 |
43 -- 49 |
-10.7951 kcal/mol |
3.55798 kcal/mol |
0.933055 kcal/mol |
149 161@LB@ | |@LB@5'-CGG...GCGAC CU CUUUA...AUA-3'@LB@ CA GAGGAAU@LB@ || |||||||@LB@ GU CUCCUUA@LB@3'-UUU...GGGCA UU AAGUA...ACA-5'@LB@ | |@LB@ 54 42@LB@@LB@@LB@Energy -6.30 kcal/mol@LB@Hybridization Energy -10.7951 kcal/mol@LB@Unfolding Energy - mRNA 3.55798 kcal/mol@LB@Unfolding Energy - sRNA 0.933055 kcal/mol@LB@@LB@Position - mRNA 150 -- 160@LB@Position - sRNA 43 -- 53@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 43 -- 49@LB@ |
141 |
0.02753 |
0.6177 |
b3215 |
yhcA |
-6.30 |
0.221284 |
185 -- 194 |
39 -- 48 |
putative periplasmic chaperone protein |
|
_____________184________195\n_____________|__________|\n5'-ACG...AUUAC__________AUUUA...AAA-3'\n______________AGGAGUUUUA\n______________||||:|||:|\n______________UCCUUAAAGU\n3'-UUU...GUUUC__________AAAAA...ACA-5'\n_____________|__________|\n_____________49_________38\n |
187 -- 193 |
40 -- 46 |
-10.0044 kcal/mol |
2.68942 kcal/mol |
1.01866 kcal/mol |
184 195@LB@ | |@LB@5'-ACG...AUUAC AUUUA...AAA-3'@LB@ AGGAGUUUUA@LB@ ||||:|||:|@LB@ UCCUUAAAGU@LB@3'-UUU...GUUUC AAAAA...ACA-5'@LB@ | |@LB@ 49 38@LB@@LB@@LB@Energy -6.30 kcal/mol@LB@Hybridization Energy -10.0044 kcal/mol@LB@Unfolding Energy - mRNA 2.68942 kcal/mol@LB@Unfolding Energy - sRNA 1.01866 kcal/mol@LB@@LB@Position - mRNA 185 -- 194@LB@Position - sRNA 39 -- 48@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 40 -- 46@LB@ |
180 |
0.03697 |
0.6177 |
b1325 |
ycjG |
-6.24 |
0.226397 |
189 -- 195 |
47 -- 53 |
L-Ala-D/L-Glu epimerase |
|
_____________188_____196\n_____________|_______|\n5'-AAG...GACAA_______UAAAG...AAC-3'\n______________CAAGGAG\n______________|||:|||\n______________GUUUCUC\n3'-UUU...GGGCA_______CUUAA...ACA-5'\n_____________|_______|\n_____________54______46\n |
189 -- 195 |
47 -- 53 |
-8.11062 kcal/mol |
0.981925 kcal/mol |
0.886139 kcal/mol |
188 196@LB@ | |@LB@5'-AAG...GACAA UAAAG...AAC-3'@LB@ CAAGGAG@LB@ |||:|||@LB@ GUUUCUC@LB@3'-UUU...GGGCA CUUAA...ACA-5'@LB@ | |@LB@ 54 46@LB@@LB@@LB@Energy -6.24 kcal/mol@LB@Hybridization Energy -8.11062 kcal/mol@LB@Unfolding Energy - mRNA 0.981925 kcal/mol@LB@Unfolding Energy - sRNA 0.886139 kcal/mol@LB@@LB@Position - mRNA 189 -- 195@LB@Position - sRNA 47 -- 53@LB@Position Seed - mRNA 189 -- 195@LB@Position Seed - sRNA 47 -- 53@LB@ |
198 |
0.04148 |
0.6177 |
b1067 |
yceH |
-6.24 |
0.226874 |
185 -- 202 |
38 -- 56 |
UPF0502 family protein |
|
_____________184_________________203\n_____________|___________________|\n5'-GCA...CCGGC__C___________C____GAAAU...GUG-3'\n______________CG_UAAGGAG_AAU_UCAU\n______________||_:||:|||_|||_||||\n______________GC_GUUUCUC_UUA_AGUA\n3'-UUU...ACCGG__A_______C___A____AAAAA...ACA-5'\n_____________|___________________|\n_____________57__________________37\n |
188 -- 194 |
47 -- 53 |
-10.8881 kcal/mol |
3.47135 kcal/mol |
1.17918 kcal/mol |
184 203@LB@ | |@LB@5'-GCA...CCGGC C C GAAAU...GUG-3'@LB@ CG UAAGGAG AAU UCAU@LB@ || :||:||| ||| ||||@LB@ GC GUUUCUC UUA AGUA@LB@3'-UUU...ACCGG A C A AAAAA...ACA-5'@LB@ | |@LB@ 57 37@LB@@LB@@LB@Energy -6.24 kcal/mol@LB@Hybridization Energy -10.8881 kcal/mol@LB@Unfolding Energy - mRNA 3.47135 kcal/mol@LB@Unfolding Energy - sRNA 1.17918 kcal/mol@LB@@LB@Position - mRNA 185 -- 202@LB@Position - sRNA 38 -- 56@LB@Position Seed - mRNA 188 -- 194@LB@Position Seed - sRNA 47 -- 53@LB@ |
125 |
0.02442 |
0.6177 |
b3181 |
greA |
-6.11 |
0.239901 |
243 -- 260 |
40 -- 56 |
transcript cleavage factor |
|
_____________242_________________261\n_____________|___________________|\n5'-CGC...AAUUA__________CU_______CUGAA...UCG-3'\n______________CG_CGAAGAG__GGAUUUU\n______________||_|:|||||__|:||||:\n______________GC_GUUUCUC__CUUAAAG\n3'-UUU...ACCGG__A________________UAAAA...ACA-5'\n_____________|___________________|\n_____________57__________________39\n |
245 -- 251 |
47 -- 53 |
-12.1125 kcal/mol |
4.98158 kcal/mol |
1.02557 kcal/mol |
242 261@LB@ | |@LB@5'-CGC...AAUUA CU CUGAA...UCG-3'@LB@ CG CGAAGAG GGAUUUU@LB@ || |:||||| |:||||:@LB@ GC GUUUCUC CUUAAAG@LB@3'-UUU...ACCGG A UAAAA...ACA-5'@LB@ | |@LB@ 57 39@LB@@LB@@LB@Energy -6.11 kcal/mol@LB@Hybridization Energy -12.1125 kcal/mol@LB@Unfolding Energy - mRNA 4.98158 kcal/mol@LB@Unfolding Energy - sRNA 1.02557 kcal/mol@LB@@LB@Position - mRNA 243 -- 260@LB@Position - sRNA 40 -- 56@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 47 -- 53@LB@ |
69 |
0.01434 |
0.6177 |
b0551 |
quuD |
-6.03 |
0.248082 |
117 -- 124 |
48 -- 55 |
DLP12 prophage; putative antitermination protein |
|
_____________116______125\n_____________|________|\n5'-ACU...AUGAA________UAACA...GAU-3'\n______________GUCAGAGA\n______________||||:|||\n______________CAGUUUCU\n3'-UUU...CCGGG________CCUUA...ACA-5'\n_____________|________|\n_____________56_______47\n |
118 -- 124 |
48 -- 54 |
-9.27195 kcal/mol |
2.92769 kcal/mol |
0.318869 kcal/mol |
116 125@LB@ | |@LB@5'-ACU...AUGAA UAACA...GAU-3'@LB@ GUCAGAGA@LB@ ||||:|||@LB@ CAGUUUCU@LB@3'-UUU...CCGGG CCUUA...ACA-5'@LB@ | |@LB@ 56 47@LB@@LB@@LB@Energy -6.03 kcal/mol@LB@Hybridization Energy -9.27195 kcal/mol@LB@Unfolding Energy - mRNA 2.92769 kcal/mol@LB@Unfolding Energy - sRNA 0.318869 kcal/mol@LB@@LB@Position - mRNA 117 -- 124@LB@Position - sRNA 48 -- 55@LB@Position Seed - mRNA 118 -- 124@LB@Position Seed - sRNA 48 -- 54@LB@ |
132 |
0.02588 |
0.6177 |
b3180 |
yhbY |
-5.98 |
0.252347 |
290 -- 297 |
46 -- 53 |
RNA binding protein associated with pre-50S ribosomal subunits |
|
_____________289______298\n_____________|________|\n5'-CUG...UUGAC________UGC-3'\n______________CGAAGGGG\n______________|:|||:||\n______________GUUUCUCC\n3'-UUU...GGGCA________UUAAA...ACA-5'\n_____________|________|\n_____________54_______45\n |
291 -- 297 |
46 -- 52 |
-10.2464 kcal/mol |
3.35117 kcal/mol |
0.910679 kcal/mol |
289 298@LB@ | |@LB@5'-CUG...UUGAC UGC-3'@LB@ CGAAGGGG@LB@ |:|||:||@LB@ GUUUCUCC@LB@3'-UUU...GGGCA UUAAA...ACA-5'@LB@ | |@LB@ 54 45@LB@@LB@@LB@Energy -5.98 kcal/mol@LB@Hybridization Energy -10.2464 kcal/mol@LB@Unfolding Energy - mRNA 3.35117 kcal/mol@LB@Unfolding Energy - sRNA 0.910679 kcal/mol@LB@@LB@Position - mRNA 290 -- 297@LB@Position - sRNA 46 -- 53@LB@Position Seed - mRNA 291 -- 297@LB@Position Seed - sRNA 46 -- 52@LB@ |