108 |
0.0217 |
0.6177 |
b0243 |
proA |
-8.76 |
0.073409 |
183 -- 193 |
47 -- 57 |
gamma-glutamylphosphate reductase |
|
_____________182_________194\n_____________|___________|\n5'-AAU...AUUAC___________CAGGC...AUG-3'\n______________CCGUUAAGGAG\n______________||||:||:|||\n______________GGCAGUUUCUC\n3'-UUU...AACCG___________CUUAA...ACA-5'\n_____________|___________|\n_____________58__________46\n |
187 -- 193 |
47 -- 53 |
-14.7866 kcal/mol |
3.29159 kcal/mol |
2.73556 kcal/mol |
182 194@LB@ | |@LB@5'-AAU...AUUAC CAGGC...AUG-3'@LB@ CCGUUAAGGAG@LB@ ||||:||:|||@LB@ GGCAGUUUCUC@LB@3'-UUU...AACCG CUUAA...ACA-5'@LB@ | |@LB@ 58 46@LB@@LB@@LB@Energy -8.76 kcal/mol@LB@Hybridization Energy -14.7866 kcal/mol@LB@Unfolding Energy - mRNA 3.29159 kcal/mol@LB@Unfolding Energy - sRNA 2.73556 kcal/mol@LB@@LB@Position - mRNA 183 -- 193@LB@Position - sRNA 47 -- 57@LB@Position Seed - mRNA 187 -- 193@LB@Position Seed - sRNA 47 -- 53@LB@ |
160 |
0.0322 |
0.6177 |
b1550 |
gnsB |
-8.75 |
0.073686 |
189 -- 197 |
44 -- 52 |
Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts) |
b4517 |
_____________188_______198\n_____________|_________|\n5'-UGG...GACUA_________AUGAU...UUA-3'\n______________AAAGAGGAA\n______________|||||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
191 -- 197 |
44 -- 50 |
-11.5466 kcal/mol |
1.93458 kcal/mol |
0.860683 kcal/mol |
188 198@LB@ | |@LB@5'-UGG...GACUA AUGAU...UUA-3'@LB@ AAAGAGGAA@LB@ |||||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.75 kcal/mol@LB@Hybridization Energy -11.5466 kcal/mol@LB@Unfolding Energy - mRNA 1.93458 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 44 -- 50@LB@ |
139 |
0.02683 |
0.6177 |
b1474 |
fdnG |
-8.74 |
0.074199 |
188 -- 196 |
44 -- 52 |
formate dehydrogenase-N alpha subunit nitrate-inducible |
b3894 |
_____________187_______197\n_____________|_________|\n5'-AUU...UGAAA_________AGCAA...CUC-3'\n______________AAAGAGGAA\n______________|||||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
190 -- 196 |
44 -- 50 |
-11.3772 kcal/mol |
1.78024 kcal/mol |
0.860683 kcal/mol |
187 197@LB@ | |@LB@5'-AUU...UGAAA AGCAA...CUC-3'@LB@ AAAGAGGAA@LB@ |||||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -11.3772 kcal/mol@LB@Unfolding Energy - mRNA 1.78024 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 188 -- 196@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 44 -- 50@LB@ |
177 |
0.03616 |
0.6177 |
b1474 |
fdnG |
-8.74 |
0.074199 |
188 -- 196 |
44 -- 52 |
formate dehydrogenase-N alpha subunit nitrate-inducible |
b3894 |
_____________187_______197\n_____________|_________|\n5'-AUU...UGAAA_________AGCAA...CUC-3'\n______________AAAGAGGAA\n______________|||||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
190 -- 196 |
44 -- 50 |
-11.3772 kcal/mol |
1.78024 kcal/mol |
0.860683 kcal/mol |
187 197@LB@ | |@LB@5'-AUU...UGAAA AGCAA...CUC-3'@LB@ AAAGAGGAA@LB@ |||||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.74 kcal/mol@LB@Hybridization Energy -11.3772 kcal/mol@LB@Unfolding Energy - mRNA 1.78024 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 188 -- 196@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 190 -- 196@LB@Position Seed - sRNA 44 -- 50@LB@ |
74 |
0.01569 |
0.6177 |
b3012 |
dkgA |
-8.72 |
0.074604 |
189 -- 197 |
44 -- 52 |
2 5-diketo-D-gluconate reductase A |
|
_____________188_______198\n_____________|_________|\n5'-CUG...AUAUA_________CGUAU...CCA-3'\n______________AAGGAGGAA\n______________||:||||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
191 -- 197 |
44 -- 50 |
-11.1725 kcal/mol |
1.58724 kcal/mol |
0.860683 kcal/mol |
188 198@LB@ | |@LB@5'-CUG...AUAUA CGUAU...CCA-3'@LB@ AAGGAGGAA@LB@ ||:||||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -11.1725 kcal/mol@LB@Unfolding Energy - mRNA 1.58724 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 189 -- 197@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 44 -- 50@LB@ |
197 |
0.04129 |
0.6177 |
b1205 |
ychH |
-8.72 |
0.074776 |
153 -- 162 |
43 -- 52 |
DUF2583 family putative inner membrane protein |
|
_____________152________163\n_____________|__________|\n5'-CAA...AUAAG__________AUUCC...UAC-3'\n______________GAAGAGGGGU\n______________:||||||::|\n______________UUUCUCCUUA\n3'-UUU...GGCAG__________AAGUA...ACA-5'\n_____________|__________|\n_____________53_________42\n |
156 -- 162 |
43 -- 49 |
-11.7568 kcal/mol |
2.17132 kcal/mol |
0.865937 kcal/mol |
152 163@LB@ | |@LB@5'-CAA...AUAAG AUUCC...UAC-3'@LB@ GAAGAGGGGU@LB@ :||||||::|@LB@ UUUCUCCUUA@LB@3'-UUU...GGCAG AAGUA...ACA-5'@LB@ | |@LB@ 53 42@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -11.7568 kcal/mol@LB@Unfolding Energy - mRNA 2.17132 kcal/mol@LB@Unfolding Energy - sRNA 0.865937 kcal/mol@LB@@LB@Position - mRNA 153 -- 162@LB@Position - sRNA 43 -- 52@LB@Position Seed - mRNA 156 -- 162@LB@Position Seed - sRNA 43 -- 49@LB@ |
48 |
0.00943 |
0.6129 |
b3033 |
yqiB |
-8.72 |
0.074798 |
113 -- 121 |
44 -- 52 |
DUF1249 protein YqiB |
|
_____________112_______122\n_____________|_________|\n5'-UGG...GUAGA_________AAUCG...GCG-3'\n______________AGAGGGGAA\n______________|:||:||||\n______________UUUCUCCUU\n3'-UUU...GGCAG_________AAAGU...ACA-5'\n_____________|_________|\n_____________53________43\n |
115 -- 121 |
44 -- 50 |
-10.7393 kcal/mol |
1.15971 kcal/mol |
0.860683 kcal/mol |
112 122@LB@ | |@LB@5'-UGG...GUAGA AAUCG...GCG-3'@LB@ AGAGGGGAA@LB@ |:||:||||@LB@ UUUCUCCUU@LB@3'-UUU...GGCAG AAAGU...ACA-5'@LB@ | |@LB@ 53 43@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -10.7393 kcal/mol@LB@Unfolding Energy - mRNA 1.15971 kcal/mol@LB@Unfolding Energy - sRNA 0.860683 kcal/mol@LB@@LB@Position - mRNA 113 -- 121@LB@Position - sRNA 44 -- 52@LB@Position Seed - mRNA 115 -- 121@LB@Position Seed - sRNA 44 -- 50@LB@ |
110 |
0.02234 |
0.6177 |
b0141 |
yadN |
-8.72 |
0.074917 |
179 -- 189 |
37 -- 47 |
putative fimbrial-like adhesin protein |
|
_____________178_________190\n_____________|___________|\n5'-UUA...CUAAU___________AAAGG...GUG-3'\n______________GGAAUUUUAUU\n______________|||||||:|||\n______________CCUUAAAGUAA\n3'-UUU...UUUCU___________AAAAA...ACA-5'\n_____________|___________|\n_____________48__________36\n |
183 -- 189 |
37 -- 43 |
-11.1734 kcal/mol |
1.41261 kcal/mol |
1.04525 kcal/mol |
178 190@LB@ | |@LB@5'-UUA...CUAAU AAAGG...GUG-3'@LB@ GGAAUUUUAUU@LB@ |||||||:|||@LB@ CCUUAAAGUAA@LB@3'-UUU...UUUCU AAAAA...ACA-5'@LB@ | |@LB@ 48 36@LB@@LB@@LB@Energy -8.72 kcal/mol@LB@Hybridization Energy -11.1734 kcal/mol@LB@Unfolding Energy - mRNA 1.41261 kcal/mol@LB@Unfolding Energy - sRNA 1.04525 kcal/mol@LB@@LB@Position - mRNA 179 -- 189@LB@Position - sRNA 37 -- 47@LB@Position Seed - mRNA 183 -- 189@LB@Position Seed - sRNA 37 -- 43@LB@ |
149 |
0.03014 |
0.6177 |
b4470 |
yhaM |
-8.71 |
0.074988 |
251 -- 260 |
44 -- 54 |
putative L-serine dehydratase alpha chain |
|
_____________250_________261\n_____________|___________|\n5'-UGU...GCCGU___________GUAAA...UGG-3'\n______________UC_AGGAGGAA\n______________||_|:||||||\n______________AG_UUCUCCUU\n3'-UUU...CGGGC__U________AAAGU...ACA-5'\n_____________|___________|\n_____________55__________43\n |
254 -- 260 |
44 -- 50 |
-10.8529 kcal/mol |
1.19981 kcal/mol |
0.939671 kcal/mol |
250 261@LB@ | |@LB@5'-UGU...GCCGU GUAAA...UGG-3'@LB@ UC AGGAGGAA@LB@ || |:||||||@LB@ AG UUCUCCUU@LB@3'-UUU...CGGGC U AAAGU...ACA-5'@LB@ | |@LB@ 55 43@LB@@LB@@LB@Energy -8.71 kcal/mol@LB@Hybridization Energy -10.8529 kcal/mol@LB@Unfolding Energy - mRNA 1.19981 kcal/mol@LB@Unfolding Energy - sRNA 0.939671 kcal/mol@LB@@LB@Position - mRNA 251 -- 260@LB@Position - sRNA 44 -- 54@LB@Position Seed - mRNA 254 -- 260@LB@Position Seed - sRNA 44 -- 50@LB@ |
60 |
0.01286 |
0.6177 |
b4113 |
basR |
-8.68 |
0.076010 |
6 -- 31 |
48 -- 75 |
response regulator in two-component regulatory system with BasS |
|
_____________5____________________________32\n_____________|____________________________|\n______5'-CAGGU_______C____________________AUUAU...CGC-3'\n______________GCCGAUG_UGCUG_UGG_CUGUCGGAGG\n______________|||:||:_:|||:_|||_|:|||::||:\n______________CGGUUAU_GCGAU_ACC_GGCAGUUUCU\n3'-UUU...UUUAC_______A_____A___G__________CCUUA...ACA-5'\n_____________|____________________________|\n_____________76___________________________47\n |
25 -- 31 |
48 -- 54 |
-31.4034 kcal/mol |
11.3837 kcal/mol |
11.3355 kcal/mol |
5 32@LB@ | |@LB@ 5'-CAGGU C AUUAU...CGC-3'@LB@ GCCGAUG UGCUG UGG CUGUCGGAGG@LB@ |||:||: :|||: ||| |:|||::||:@LB@ CGGUUAU GCGAU ACC GGCAGUUUCU@LB@3'-UUU...UUUAC A A G CCUUA...ACA-5'@LB@ | |@LB@ 76 47@LB@@LB@@LB@Energy -8.68 kcal/mol@LB@Hybridization Energy -31.4034 kcal/mol@LB@Unfolding Energy - mRNA 11.3837 kcal/mol@LB@Unfolding Energy - sRNA 11.3355 kcal/mol@LB@@LB@Position - mRNA 6 -- 31@LB@Position - sRNA 48 -- 75@LB@Position Seed - mRNA 25 -- 31@LB@Position Seed - sRNA 48 -- 54@LB@ |