112 |
0.01125 |
0.3104 |
b2515 |
ispG |
-10.24 |
0.110168 |
132 -- 140 |
4 -- 12 |
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|
_____________131_______141\n_____________|_________|\n5'-CGU...CAGGU_________GACCC...UGA-3'\n______________UGCGCGUCU\n______________|||||||||\n______________ACGCGCAGA\n3'-UUU...UGUUU_________AAG-5'\n_____________|_________|\n_____________13________3\n |
134 -- 140 |
4 -- 10 |
-16.4542 kcal/mol |
5.04928 kcal/mol |
1.16019 kcal/mol |
131 141@LB@ | |@LB@5'-CGU...CAGGU GACCC...UGA-3'@LB@ UGCGCGUCU@LB@ |||||||||@LB@ ACGCGCAGA@LB@3'-UUU...UGUUU AAG-5'@LB@ | |@LB@ 13 3@LB@@LB@@LB@Energy -10.24 kcal/mol@LB@Hybridization Energy -16.4542 kcal/mol@LB@Unfolding Energy - mRNA 5.04928 kcal/mol@LB@Unfolding Energy - sRNA 1.16019 kcal/mol@LB@@LB@Position - mRNA 132 -- 140@LB@Position - sRNA 4 -- 12@LB@Position Seed - mRNA 134 -- 140@LB@Position Seed - sRNA 4 -- 10@LB@ |
46 |
0.003408 |
0.2484 |
b2518 |
ndk |
-12.77 |
0.039848 |
1 -- 16 |
7 -- 21 |
multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase |
|
______________1_______________17\n______________|_______________|\n___________5'-___________A____GGGCA...AAA-3'\n______________GGUGAUGGAUG_CGUG\n______________|:|:|:::|||_||:|\n______________CUAUUGUUUAC_GCGC\n3'-UUU...UACUA________________AGAAAG-5'\n_____________|________________|\n_____________22_______________6\n |
5 -- 11 |
11 -- 17 |
-16.3595 kcal/mol |
2.34366 kcal/mol |
1.24179 kcal/mol |
1 17@LB@ | |@LB@ 5'- A GGGCA...AAA-3'@LB@ GGUGAUGGAUG CGUG@LB@ |:|:|:::||| ||:|@LB@ CUAUUGUUUAC GCGC@LB@3'-UUU...UACUA AGAAAG-5'@LB@ | |@LB@ 22 6@LB@@LB@@LB@Energy -12.77 kcal/mol@LB@Hybridization Energy -16.3595 kcal/mol@LB@Unfolding Energy - mRNA 2.34366 kcal/mol@LB@Unfolding Energy - sRNA 1.24179 kcal/mol@LB@@LB@Position - mRNA 1 -- 16@LB@Position - sRNA 7 -- 21@LB@Position Seed - mRNA 5 -- 11@LB@Position Seed - sRNA 11 -- 17@LB@ |
72 |
0.006739 |
0.3087 |
b2520 |
yfhM |
-8.19 |
0.237735 |
190 -- 217 |
6 -- 30 |
bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein |
|
_____________189__________________________218\n_____________|____________________________|\n5'-CUC...GUGGC________AAA____AA____UA_____AGCCG...CUU-3'\n______________AGGGAUGA___AUGA__AAGU__CGCGU\n______________||||||||___||:|__||:|__|||||\n______________UCCCUACU___UAUU__UUUA__GCGCA\n3'-UUU...UUAAG________AC_____G_____C______GAAAG-5'\n_____________|____________________________|\n_____________31___________________________5\n |
191 -- 197 |
23 -- 29 |
-19.496 kcal/mol |
3.87755 kcal/mol |
7.4255 kcal/mol |
189 218@LB@ | |@LB@5'-CUC...GUGGC AAA AA UA AGCCG...CUU-3'@LB@ AGGGAUGA AUGA AAGU CGCGU@LB@ |||||||| ||:| ||:| |||||@LB@ UCCCUACU UAUU UUUA GCGCA@LB@3'-UUU...UUAAG AC G C GAAAG-5'@LB@ | |@LB@ 31 5@LB@@LB@@LB@Energy -8.19 kcal/mol@LB@Hybridization Energy -19.496 kcal/mol@LB@Unfolding Energy - mRNA 3.87755 kcal/mol@LB@Unfolding Energy - sRNA 7.4255 kcal/mol@LB@@LB@Position - mRNA 190 -- 217@LB@Position - sRNA 6 -- 30@LB@Position Seed - mRNA 191 -- 197@LB@Position Seed - sRNA 23 -- 29@LB@ |
36 |
0.002407 |
0.2206 |
b2550 |
yphH |
-13.17 |
0.033778 |
238 -- 251 |
7 -- 20 |
putative DNA-binding transcriptional regulator |
|
_____________237____________252\n_____________|______________|\n5'-AGG...CCACC______________AUUCU...UGG-3'\n______________AUAACAAAUGCGUG\n______________||||||||||||:|\n______________UAUUGUUUACGCGC\n3'-UUU...ACUAC______________AGAAAG-5'\n_____________|______________|\n_____________21_____________6\n |
245 -- 251 |
7 -- 13 |
-19.0929 kcal/mol |
4.67933 kcal/mol |
1.23906 kcal/mol |
237 252@LB@ | |@LB@5'-AGG...CCACC AUUCU...UGG-3'@LB@ AUAACAAAUGCGUG@LB@ ||||||||||||:|@LB@ UAUUGUUUACGCGC@LB@3'-UUU...ACUAC AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -13.17 kcal/mol@LB@Hybridization Energy -19.0929 kcal/mol@LB@Unfolding Energy - mRNA 4.67933 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 238 -- 251@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 245 -- 251@LB@Position Seed - sRNA 7 -- 13@LB@ |
13 |
0.0003435 |
0.08948 |
b2551 |
glyA |
-14.51 |
0.019315 |
147 -- 213 |
7 -- 69 |
serine hydroxymethyltransferase |
|
_____________146____________________________________________________________________214\n_____________|______________________________________________________________________|\n5'-CAA...CCAAC___A______UAUAAA_______A________GUUAG___________A____CG____U__________AAAUG...UCG-3'\n______________AGG_CCGC_C______GGCCAAA_AUUUUAUU_____CUGAG_UCAGG_GAUG__GAUG_UAAA_GCGUG\n______________|||_||:|_|______|||||||_||||:||:_____||||:_|||||_||||__|||:_:|||_|||:|\n______________UCC_GGUG_G______CCGGUUU_UAAAGUAG_____GACUU_AGUCC_CUAC__CUAU_GUUU_CGCGC\n________3'-UUU________A_CACUCA________________A_________A__________UA____U____A_____AGAAAG-5'\n_____________|______________________________________________________________________|\n_____________70_____________________________________________________________________6\n |
162 -- 168 |
48 -- 54 |
-52.4461 kcal/mol |
16.168 kcal/mol |
21.7638 kcal/mol |
146 214@LB@ | |@LB@5'-CAA...CCAAC A UAUAAA A GUUAG A CG U AAAUG...UCG-3'@LB@ AGG CCGC C GGCCAAA AUUUUAUU CUGAG UCAGG GAUG GAUG UAAA GCGUG@LB@ ||| ||:| | ||||||| ||||:||: ||||: ||||| |||| |||: :||| |||:|@LB@ UCC GGUG G CCGGUUU UAAAGUAG GACUU AGUCC CUAC CUAU GUUU CGCGC@LB@ 3'-UUU A CACUCA A A UA U A AGAAAG-5'@LB@ | |@LB@ 70 6@LB@@LB@@LB@Energy -14.51 kcal/mol@LB@Hybridization Energy -52.4461 kcal/mol@LB@Unfolding Energy - mRNA 16.168 kcal/mol@LB@Unfolding Energy - sRNA 21.7638 kcal/mol@LB@@LB@Position - mRNA 147 -- 213@LB@Position - sRNA 7 -- 69@LB@Position Seed - mRNA 162 -- 168@LB@Position Seed - sRNA 48 -- 54@LB@ |
91 |
0.009339 |
0.3104 |
b2562 |
yfhL |
-11.62 |
0.063873 |
146 -- 160 |
6 -- 20 |
putative 4Fe-4S cluster-containing protein |
|
_____________145_____________161\n_____________|_______________|\n5'-AGC...UCUGA____A__________AUAAU...UUA-3'\n______________GUAA_GAAUGCGCGU\n______________:|||_:|||||||||\n______________UAUU_UUUACGCGCA\n3'-UUU...ACUAC____G__________GAAAG-5'\n_____________|_______________|\n_____________21______________5\n |
154 -- 160 |
6 -- 12 |
-16.8242 kcal/mol |
3.96482 kcal/mol |
1.24244 kcal/mol |
145 161@LB@ | |@LB@5'-AGC...UCUGA A AUAAU...UUA-3'@LB@ GUAA GAAUGCGCGU@LB@ :||| :|||||||||@LB@ UAUU UUUACGCGCA@LB@3'-UUU...ACUAC G GAAAG-5'@LB@ | |@LB@ 21 5@LB@@LB@@LB@Energy -11.62 kcal/mol@LB@Hybridization Energy -16.8242 kcal/mol@LB@Unfolding Energy - mRNA 3.96482 kcal/mol@LB@Unfolding Energy - sRNA 1.24244 kcal/mol@LB@@LB@Position - mRNA 146 -- 160@LB@Position - sRNA 6 -- 20@LB@Position Seed - mRNA 154 -- 160@LB@Position Seed - sRNA 6 -- 12@LB@ |
108 |
0.01118 |
0.3104 |
b2565 |
recO |
-9.71 |
0.135448 |
294 -- 300 |
5 -- 11 |
gap repair protein |
|
_____________293____300\n_____________|______|\n5'-GAA...GGCGC_______-3'\n______________GUGCGUC\n______________|:|||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
294 -- 300 |
5 -- 11 |
-11.8762 kcal/mol |
1.05403 kcal/mol |
1.11145 kcal/mol |
293 300@LB@ | |@LB@5'-GAA...GGCGC -3'@LB@ GUGCGUC@LB@ |:|||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -11.8762 kcal/mol@LB@Unfolding Energy - mRNA 1.05403 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 294 -- 300@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 294 -- 300@LB@Position Seed - sRNA 5 -- 11@LB@ |
118 |
0.01199 |
0.3104 |
b2573 |
rpoE |
-10.72 |
0.091300 |
77 -- 87 |
8 -- 18 |
RNA polymerase sigma E factor |
|
_____________76__________88\n_____________|___________|\n5'-ACA...ACAAA___________UACGG...UGG-3'\n______________AACAGAUGCGU\n______________||||:|||||:\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
81 -- 87 |
8 -- 14 |
-15.0531 kcal/mol |
3.12642 kcal/mol |
1.20363 kcal/mol |
76 88@LB@ | |@LB@5'-ACA...ACAAA UACGG...UGG-3'@LB@ AACAGAUGCGU@LB@ ||||:|||||:@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -10.72 kcal/mol@LB@Hybridization Energy -15.0531 kcal/mol@LB@Unfolding Energy - mRNA 3.12642 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 77 -- 87@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 81 -- 87@LB@Position Seed - sRNA 8 -- 14@LB@ |
84 |
0.008129 |
0.3104 |
b2579 |
grcA |
-9.71 |
0.135356 |
279 -- 291 |
5 -- 18 |
autonomous glycyl radical cofactor |
|
_____________278____________292\n_____________|______________|\n5'-UUG...AAAAA______________GCAUC...UUG-3'\n______________GGCGAA_GCGCGUU\n______________::|:||_||||||:\n______________UUGUUU_CGCGCAG\n3'-UUU...UACUA______A_______AAAG-5'\n_____________|______________|\n_____________19_____________4\n |
285 -- 291 |
5 -- 11 |
-16.0784 kcal/mol |
5.14159 kcal/mol |
1.2243 kcal/mol |
278 292@LB@ | |@LB@5'-UUG...AAAAA GCAUC...UUG-3'@LB@ GGCGAA GCGCGUU@LB@ ::|:|| ||||||:@LB@ UUGUUU CGCGCAG@LB@3'-UUU...UACUA A AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -9.71 kcal/mol@LB@Hybridization Energy -16.0784 kcal/mol@LB@Unfolding Energy - mRNA 5.14159 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 279 -- 291@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 285 -- 291@LB@Position Seed - sRNA 5 -- 11@LB@ |
10 |
0.0002413 |
0.08171 |
b2594 |
rluD |
-15.70 |
0.011720 |
48 -- 64 |
5 -- 21 |
23S rRNA pseudouridine(1911 1915 1917) synthase |
|
_____________47________________65\n_____________|_________________|\n5'-CCC...CACCA____UUUC_________AUGAC...GUU-3'\n______________GAUA____AUGCGCGUC\n______________||||____|||||||||\n______________CUAU____UACGCGCAG\n3'-UUU...UACUA____UGUU_________AAAG-5'\n_____________|_________________|\n_____________22________________4\n |
58 -- 64 |
5 -- 11 |
-19.7285 kcal/mol |
2.7828 kcal/mol |
1.24955 kcal/mol |
47 65@LB@ | |@LB@5'-CCC...CACCA UUUC AUGAC...GUU-3'@LB@ GAUA AUGCGCGUC@LB@ |||| |||||||||@LB@ CUAU UACGCGCAG@LB@3'-UUU...UACUA UGUU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -15.70 kcal/mol@LB@Hybridization Energy -19.7285 kcal/mol@LB@Unfolding Energy - mRNA 2.7828 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 48 -- 64@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 58 -- 64@LB@Position Seed - sRNA 5 -- 11@LB@ |