133 |
0.01287 |
0.3104 |
b3179 |
rlmE |
-8.60 |
0.205247 |
24 -- 43 |
1 -- 17 |
23S rRNA U2552 2'-O-ribose methyltransferase SAM-dependent |
|
_____________23___________________44\n_____________|____________________|\n5'-GCC...CUUGA__________CAGAC_____AGGUG...CCC-3'\n______________GCGGAUGUGC_____CUUUC\n______________:|::|||:||_____|||||\n______________UGUUUACGCG_____GAAAG\n3'-UUU...ACUAU__________CA________-5'\n_____________|___________________|\n_____________18__________________1\n |
27 -- 33 |
8 -- 14 |
-16.3409 kcal/mol |
6.50016 kcal/mol |
1.23994 kcal/mol |
23 44@LB@ | |@LB@5'-GCC...CUUGA CAGAC AGGUG...CCC-3'@LB@ GCGGAUGUGC CUUUC@LB@ :|::|||:|| |||||@LB@ UGUUUACGCG GAAAG@LB@3'-UUU...ACUAU CA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -8.60 kcal/mol@LB@Hybridization Energy -16.3409 kcal/mol@LB@Unfolding Energy - mRNA 6.50016 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 24 -- 43@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 27 -- 33@LB@Position Seed - sRNA 8 -- 14@LB@ |
193 |
0.01896 |
0.3104 |
b3181 |
greA |
-10.36 |
0.105339 |
194 -- 204 |
10 -- 20 |
transcript cleavage factor |
|
_____________193_________205\n_____________|___________|\n5'-CGC...GAGGU___________AAGCU...UCG-3'\n______________AUAACAAAUGC\n______________|||||||||||\n______________UAUUGUUUACG\n3'-UUU...ACUAC___________CGCAG...AAG-5'\n_____________|___________|\n_____________21__________9\n |
198 -- 204 |
10 -- 16 |
-13.1767 kcal/mol |
1.58941 kcal/mol |
1.22774 kcal/mol |
193 205@LB@ | |@LB@5'-CGC...GAGGU AAGCU...UCG-3'@LB@ AUAACAAAUGC@LB@ |||||||||||@LB@ UAUUGUUUACG@LB@3'-UUU...ACUAC CGCAG...AAG-5'@LB@ | |@LB@ 21 9@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -13.1767 kcal/mol@LB@Unfolding Energy - mRNA 1.58941 kcal/mol@LB@Unfolding Energy - sRNA 1.22774 kcal/mol@LB@@LB@Position - mRNA 194 -- 204@LB@Position - sRNA 10 -- 20@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 10 -- 16@LB@ |
200 |
0.0195 |
0.3104 |
b3183 |
obgE |
-7.01 |
0.355777 |
76 -- 83 |
4 -- 11 |
GTPase involved in cell partioning and DNA repair |
|
_____________75_______84\n_____________|________|\n5'-UUU...UCUCG________GUCGU...GCC-3'\n______________GUGCGUUU\n______________|:||||:|\n______________CGCGCAGA\n3'-UUU...GUUUA________AAG-5'\n_____________|________|\n_____________12_______3\n |
77 -- 83 |
4 -- 10 |
-11.428 kcal/mol |
3.26207 kcal/mol |
1.15639 kcal/mol |
75 84@LB@ | |@LB@5'-UUU...UCUCG GUCGU...GCC-3'@LB@ GUGCGUUU@LB@ |:||||:|@LB@ CGCGCAGA@LB@3'-UUU...GUUUA AAG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -7.01 kcal/mol@LB@Hybridization Energy -11.428 kcal/mol@LB@Unfolding Energy - mRNA 3.26207 kcal/mol@LB@Unfolding Energy - sRNA 1.15639 kcal/mol@LB@@LB@Position - mRNA 76 -- 83@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 77 -- 83@LB@Position Seed - sRNA 4 -- 10@LB@ |
109 |
0.01118 |
0.3104 |
b3195 |
mlaF |
-11.81 |
0.058997 |
89 -- 105 |
1 -- 18 |
ABC transporter maintaining OM lipid asymmetry ATP-binding protein |
|
_____________88_________________106\n_____________|__________________|\n5'-UUU...AGUAA___________AG_____GCUAA...GAG-3'\n______________AACAAAUGC_C__CUUUC\n______________|||||||||_|__|||||\n______________UUGUUUACG_G__GAAAG\n3'-UUU...UACUA_________C_CA_____-5'\n_____________|_________________|\n_____________19________________1\n |
91 -- 97 |
10 -- 16 |
-16.9522 kcal/mol |
3.89814 kcal/mol |
1.24077 kcal/mol |
88 106@LB@ | |@LB@5'-UUU...AGUAA AG GCUAA...GAG-3'@LB@ AACAAAUGC C CUUUC@LB@ ||||||||| | |||||@LB@ UUGUUUACG G GAAAG@LB@3'-UUU...UACUA C CA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -16.9522 kcal/mol@LB@Unfolding Energy - mRNA 3.89814 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 89 -- 105@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 91 -- 97@LB@Position Seed - sRNA 10 -- 16@LB@ |
121 |
0.01226 |
0.3104 |
b3209 |
elbB |
-12.57 |
0.043302 |
225 -- 240 |
4 -- 18 |
isoprenoid biosynthesis protein with amidotransferase-like domain |
|
_____________224______________241\n_____________|________________|\n5'-GCG...UUCUG__________G_____AUGAC...GUG-3'\n______________AGCGGAUGCG_CGUCU\n______________|:|::|||||_|||||\n______________UUGUUUACGC_GCAGA\n3'-UUU...UACUA________________AAG-5'\n_____________|________________|\n_____________19_______________3\n |
228 -- 234 |
9 -- 15 |
-20.315 kcal/mol |
6.5132 kcal/mol |
1.22995 kcal/mol |
224 241@LB@ | |@LB@5'-GCG...UUCUG G AUGAC...GUG-3'@LB@ AGCGGAUGCG CGUCU@LB@ |:|::||||| |||||@LB@ UUGUUUACGC GCAGA@LB@3'-UUU...UACUA AAG-5'@LB@ | |@LB@ 19 3@LB@@LB@@LB@Energy -12.57 kcal/mol@LB@Hybridization Energy -20.315 kcal/mol@LB@Unfolding Energy - mRNA 6.5132 kcal/mol@LB@Unfolding Energy - sRNA 1.22995 kcal/mol@LB@@LB@Position - mRNA 225 -- 240@LB@Position - sRNA 4 -- 18@LB@Position Seed - mRNA 228 -- 234@LB@Position Seed - sRNA 9 -- 15@LB@ |
64 |
0.005939 |
0.3087 |
b3237 |
argR |
-9.39 |
0.153279 |
85 -- 104 |
1 -- 19 |
l-arginine-responsive arginine metabolism regulon transcriptional regulator |
|
_____________84____________________105\n_____________|_____________________|\n5'-ACA...AAAUU_______AUCC__________AUAAC...UGC-3'\n______________UGAUAAA____CGC_UCUUUC\n______________|:|:|||____|||_||||||\n______________AUUGUUU____GCG_AGAAAG\n3'-UUU...CUACU_______AC_____C______-5'\n_____________|____________________|\n_____________20___________________1\n |
85 -- 91 |
13 -- 19 |
-12.1021 kcal/mol |
1.46458 kcal/mol |
1.25156 kcal/mol |
84 105@LB@ | |@LB@5'-ACA...AAAUU AUCC AUAAC...UGC-3'@LB@ UGAUAAA CGC UCUUUC@LB@ |:|:||| ||| ||||||@LB@ AUUGUUU GCG AGAAAG@LB@3'-UUU...CUACU AC C -5'@LB@ | |@LB@ 20 1@LB@@LB@@LB@Energy -9.39 kcal/mol@LB@Hybridization Energy -12.1021 kcal/mol@LB@Unfolding Energy - mRNA 1.46458 kcal/mol@LB@Unfolding Energy - sRNA 1.25156 kcal/mol@LB@@LB@Position - mRNA 85 -- 104@LB@Position - sRNA 1 -- 19@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 13 -- 19@LB@ |
143 |
0.01362 |
0.3104 |
b3284 |
smg |
-7.50 |
0.302399 |
64 -- 82 |
5 -- 21 |
DUF494 family putative periplasmic protein |
|
_____________63__________________83\n_____________|___________________|\n5'-UUC...GAUGA_______CC__U__A____GUCGC...CAG-3'\n______________GGUAACA__UG_UG_CGUC\n______________|:|||||__||_:|_||||\n______________CUAUUGU__AC_GC_GCAG\n3'-UUU...UACUA_______UU__________AAAG-5'\n_____________|___________________|\n_____________22__________________4\n |
64 -- 70 |
15 -- 21 |
-13.2614 kcal/mol |
4.51132 kcal/mol |
1.24955 kcal/mol |
63 83@LB@ | |@LB@5'-UUC...GAUGA CC U A GUCGC...CAG-3'@LB@ GGUAACA UG UG CGUC@LB@ |:||||| || :| ||||@LB@ CUAUUGU AC GC GCAG@LB@3'-UUU...UACUA UU AAAG-5'@LB@ | |@LB@ 22 4@LB@@LB@@LB@Energy -7.50 kcal/mol@LB@Hybridization Energy -13.2614 kcal/mol@LB@Unfolding Energy - mRNA 4.51132 kcal/mol@LB@Unfolding Energy - sRNA 1.24955 kcal/mol@LB@@LB@Position - mRNA 64 -- 82@LB@Position - sRNA 5 -- 21@LB@Position Seed - mRNA 64 -- 70@LB@Position Seed - sRNA 15 -- 21@LB@ |
101 |
0.01005 |
0.3104 |
b3288 |
fmt |
-10.27 |
0.109217 |
249 -- 255 |
5 -- 11 |
10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase |
|
_____________248_____256\n_____________|_______|\n5'-AUU...UUGCA_______AUCUC...UGU-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
249 -- 255 |
5 -- 11 |
-14.5658 kcal/mol |
3.18739 kcal/mol |
1.11145 kcal/mol |
248 256@LB@ | |@LB@5'-AUU...UUGCA AUCUC...UGU-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.27 kcal/mol@LB@Hybridization Energy -14.5658 kcal/mol@LB@Unfolding Energy - mRNA 3.18739 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 249 -- 255@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 5 -- 11@LB@ |
70 |
0.006501 |
0.3087 |
b3301 |
rplO |
-9.96 |
0.122936 |
194 -- 206 |
8 -- 20 |
50S ribosomal subunit protein L15 |
|
_____________193___________207\n_____________|_____________|\n5'-UUC...GAGGA____G________UUAAA...GUG-3'\n______________GUAA_AGAUGCGU\n______________:|||_|:|||||:\n______________UAUU_UUUACGCG\n3'-UUU...ACUAC____G________CAGAAAG-5'\n_____________|_____________|\n_____________21____________7\n |
200 -- 206 |
8 -- 14 |
-13.6668 kcal/mol |
2.47062 kcal/mol |
1.23367 kcal/mol |
193 207@LB@ | |@LB@5'-UUC...GAGGA G UUAAA...GUG-3'@LB@ GUAA AGAUGCGU@LB@ :||| |:|||||:@LB@ UAUU UUUACGCG@LB@3'-UUU...ACUAC G CAGAAAG-5'@LB@ | |@LB@ 21 7@LB@@LB@@LB@Energy -9.96 kcal/mol@LB@Hybridization Energy -13.6668 kcal/mol@LB@Unfolding Energy - mRNA 2.47062 kcal/mol@LB@Unfolding Energy - sRNA 1.23367 kcal/mol@LB@@LB@Position - mRNA 194 -- 206@LB@Position - sRNA 8 -- 20@LB@Position Seed - mRNA 200 -- 206@LB@Position Seed - sRNA 8 -- 14@LB@ |
141 |
0.01345 |
0.3104 |
b3311 |
rpsQ |
-8.13 |
0.242987 |
140 -- 150 |
8 -- 18 |
30S ribosomal subunit protein S17 |
|
_____________139_________151\n_____________|___________|\n5'-GGU...GUUGA___________CGCGA...UCU-3'\n______________AGCAAGUGCGU\n______________|:|||:||||:\n______________UUGUUUACGCG\n3'-UUU...UACUA___________CAGAAAG-5'\n_____________|___________|\n_____________19__________7\n |
144 -- 150 |
8 -- 14 |
-14.6725 kcal/mol |
5.33741 kcal/mol |
1.20363 kcal/mol |
139 151@LB@ | |@LB@5'-GGU...GUUGA CGCGA...UCU-3'@LB@ AGCAAGUGCGU@LB@ |:|||:||||:@LB@ UUGUUUACGCG@LB@3'-UUU...UACUA CAGAAAG-5'@LB@ | |@LB@ 19 7@LB@@LB@@LB@Energy -8.13 kcal/mol@LB@Hybridization Energy -14.6725 kcal/mol@LB@Unfolding Energy - mRNA 5.33741 kcal/mol@LB@Unfolding Energy - sRNA 1.20363 kcal/mol@LB@@LB@Position - mRNA 140 -- 150@LB@Position - sRNA 8 -- 18@LB@Position Seed - mRNA 144 -- 150@LB@Position Seed - sRNA 8 -- 14@LB@ |