154 |
0.01456 |
0.3104 |
b2048 |
cpsG |
-9.02 |
0.175967 |
42 -- 71 |
4 -- 44 |
phosphomannomutase |
|
_____________41________________________________________72\n_____________|_________________________________________|\n5'-GGG...GGCUC___________GA___________UG_______________CGCGG...GCG-3'\n______________UUAUCUC_GAA_____GGAUGAUG_________GUGCGUUU\n______________|:|||||_|||_____||||||||_________|:||||:|\n______________AGUAGAG_CUU_____CCUACUAC_________CGCGCAGA\n3'-UUU...UUUAA_______A___AAGUC________UAUUGUUUA________AAG-5'\n_____________|_________________________________________|\n_____________45________________________________________3\n |
65 -- 71 |
4 -- 10 |
-28.9111 kcal/mol |
10.4373 kcal/mol |
9.45546 kcal/mol |
41 72@LB@ | |@LB@5'-GGG...GGCUC GA UG CGCGG...GCG-3'@LB@ UUAUCUC GAA GGAUGAUG GUGCGUUU@LB@ |:||||| ||| |||||||| |:||||:|@LB@ AGUAGAG CUU CCUACUAC CGCGCAGA@LB@3'-UUU...UUUAA A AAGUC UAUUGUUUA AAG-5'@LB@ | |@LB@ 45 3@LB@@LB@@LB@Energy -9.02 kcal/mol@LB@Hybridization Energy -28.9111 kcal/mol@LB@Unfolding Energy - mRNA 10.4373 kcal/mol@LB@Unfolding Energy - sRNA 9.45546 kcal/mol@LB@@LB@Position - mRNA 42 -- 71@LB@Position - sRNA 4 -- 44@LB@Position Seed - mRNA 65 -- 71@LB@Position Seed - sRNA 4 -- 10@LB@ |
184 |
0.01824 |
0.3104 |
b2055 |
wcaE |
-6.17 |
0.461247 |
221 -- 230 |
4 -- 12 |
putative glycosyl transferase |
|
_____________220________231\n_____________|__________|\n5'-ACU...AUCAC__U_______CGUAA...GCU-3'\n______________UG_CGCGUUU\n______________||_|||||:|\n______________AC_GCGCAGA\n3'-UUU...UGUUU__________AAG-5'\n_____________|__________|\n_____________13_________3\n |
224 -- 230 |
4 -- 10 |
-10.1102 kcal/mol |
2.78254 kcal/mol |
1.16019 kcal/mol |
220 231@LB@ | |@LB@5'-ACU...AUCAC U CGUAA...GCU-3'@LB@ UG CGCGUUU@LB@ || |||||:|@LB@ AC GCGCAGA@LB@3'-UUU...UGUUU AAG-5'@LB@ | |@LB@ 13 3@LB@@LB@@LB@Energy -6.17 kcal/mol@LB@Hybridization Energy -10.1102 kcal/mol@LB@Unfolding Energy - mRNA 2.78254 kcal/mol@LB@Unfolding Energy - sRNA 1.16019 kcal/mol@LB@@LB@Position - mRNA 221 -- 230@LB@Position - sRNA 4 -- 12@LB@Position Seed - mRNA 224 -- 230@LB@Position Seed - sRNA 4 -- 10@LB@ |
60 |
0.00555 |
0.3084 |
b2062 |
wza |
-10.85 |
0.086669 |
18 -- 25 |
4 -- 11 |
colanic acid export protein; outer membrane auxillary lipoprotein |
|
_____________17_______26\n_____________|________|\n5'-AAA...CGGUA________GGAUG...GCA-3'\n______________GCGUGUCU\n______________|||:||||\n______________CGCGCAGA\n3'-UUU...GUUUA________AAG-5'\n_____________|________|\n_____________12_______3\n |
19 -- 25 |
4 -- 10 |
-13.9362 kcal/mol |
1.92535 kcal/mol |
1.15639 kcal/mol |
17 26@LB@ | |@LB@5'-AAA...CGGUA GGAUG...GCA-3'@LB@ GCGUGUCU@LB@ |||:||||@LB@ CGCGCAGA@LB@3'-UUU...GUUUA AAG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -10.85 kcal/mol@LB@Hybridization Energy -13.9362 kcal/mol@LB@Unfolding Energy - mRNA 1.92535 kcal/mol@LB@Unfolding Energy - sRNA 1.15639 kcal/mol@LB@@LB@Position - mRNA 18 -- 25@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 19 -- 25@LB@Position Seed - sRNA 4 -- 10@LB@ |
18 |
0.00061 |
0.1147 |
b2126 |
yehU |
-11.17 |
0.076396 |
235 -- 252 |
1 -- 18 |
inner membrane putative sensory kinase in two-component system with YehT |
|
_____________234________________253\n_____________|__________________|\n5'-GUC...GCUUC__________________UAGUC...UAA-3'\n______________AGCAGAUGUGCGUUUUUU\n______________|:||:|||:||||:|||:\n______________UUGUUUACGCGCAGAAAG\n3'-UUU...UACUA__________________-5'\n_____________|_________________|\n_____________19________________1\n |
246 -- 252 |
1 -- 7 |
-22.3117 kcal/mol |
9.89973 kcal/mol |
1.24077 kcal/mol |
234 253@LB@ | |@LB@5'-GUC...GCUUC UAGUC...UAA-3'@LB@ AGCAGAUGUGCGUUUUUU@LB@ |:||:|||:||||:|||:@LB@ UUGUUUACGCGCAGAAAG@LB@3'-UUU...UACUA -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -22.3117 kcal/mol@LB@Unfolding Energy - mRNA 9.89973 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 235 -- 252@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 246 -- 252@LB@Position Seed - sRNA 1 -- 7@LB@ |
117 |
0.01191 |
0.3104 |
b2137 |
yohF |
-11.08 |
0.079147 |
231 -- 259 |
5 -- 35 |
putative oxidoreductase |
|
_____________230_____________________________260\n_____________|_______________________________|\n5'-UAA...CCUCC___________C____CAAA___________AUUAC...GGC-3'\n______________GAUUCGGGGAU___GG____GAGUGCGCGUU\n______________:||||:|||||___|:____:|:|||||||:\n______________UUAAGUCCCUA___CU____UUUACGCGCAG\n3'-UUU...GAGAC___________CUA__AUUG___________AAAG-5'\n_____________|_______________________________|\n_____________36______________________________4\n |
253 -- 259 |
5 -- 11 |
-31.497 kcal/mol |
11.2631 kcal/mol |
9.15134 kcal/mol |
230 260@LB@ | |@LB@5'-UAA...CCUCC C CAAA AUUAC...GGC-3'@LB@ GAUUCGGGGAU GG GAGUGCGCGUU@LB@ :||||:||||| |: :|:|||||||:@LB@ UUAAGUCCCUA CU UUUACGCGCAG@LB@3'-UUU...GAGAC CUA AUUG AAAG-5'@LB@ | |@LB@ 36 4@LB@@LB@@LB@Energy -11.08 kcal/mol@LB@Hybridization Energy -31.497 kcal/mol@LB@Unfolding Energy - mRNA 11.2631 kcal/mol@LB@Unfolding Energy - sRNA 9.15134 kcal/mol@LB@@LB@Position - mRNA 231 -- 259@LB@Position - sRNA 5 -- 35@LB@Position Seed - mRNA 253 -- 259@LB@Position Seed - sRNA 5 -- 11@LB@ |
15 |
0.000461 |
0.102 |
b2140 |
dusC |
-12.07 |
0.053129 |
194 -- 211 |
3 -- 22 |
tRNA-dihydrouridine synthase C |
|
_____________193__________________212\n_____________|____________________|\n5'-AAU...GCGGG_________________G__ACUGG...UUG-3'\n______________UGAUGAU__AUGCGUGU_UU\n______________||||:|:__|||||:||_||\n______________ACUAUUG__UACGCGCA_AA\n3'-UUU...CUACU_______UU________G__AG-5'\n_____________|____________________|\n_____________23___________________2\n |
202 -- 208 |
6 -- 12 |
-18.0697 kcal/mol |
4.73944 kcal/mol |
1.259 kcal/mol |
193 212@LB@ | |@LB@5'-AAU...GCGGG G ACUGG...UUG-3'@LB@ UGAUGAU AUGCGUGU UU@LB@ ||||:|: |||||:|| ||@LB@ ACUAUUG UACGCGCA AA@LB@3'-UUU...CUACU UU G AG-5'@LB@ | |@LB@ 23 2@LB@@LB@@LB@Energy -12.07 kcal/mol@LB@Hybridization Energy -18.0697 kcal/mol@LB@Unfolding Energy - mRNA 4.73944 kcal/mol@LB@Unfolding Energy - sRNA 1.259 kcal/mol@LB@@LB@Position - mRNA 194 -- 211@LB@Position - sRNA 3 -- 22@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 6 -- 12@LB@ |
187 |
0.01837 |
0.3104 |
b2151 |
galS |
-10.59 |
0.096282 |
222 -- 228 |
5 -- 11 |
galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
|
_____________221_____229\n_____________|_______|\n5'-UCU...AUGUA_______AGGCU...GUG-3'\n______________GCGCGUC\n______________|||||||\n______________CGCGCAG\n3'-UUU...GUUUA_______AAAG-5'\n_____________|_______|\n_____________12______4\n |
222 -- 228 |
5 -- 11 |
-14.6299 kcal/mol |
2.93004 kcal/mol |
1.11145 kcal/mol |
221 229@LB@ | |@LB@5'-UCU...AUGUA AGGCU...GUG-3'@LB@ GCGCGUC@LB@ |||||||@LB@ CGCGCAG@LB@3'-UUU...GUUUA AAAG-5'@LB@ | |@LB@ 12 4@LB@@LB@@LB@Energy -10.59 kcal/mol@LB@Hybridization Energy -14.6299 kcal/mol@LB@Unfolding Energy - mRNA 2.93004 kcal/mol@LB@Unfolding Energy - sRNA 1.11145 kcal/mol@LB@@LB@Position - mRNA 222 -- 228@LB@Position - sRNA 5 -- 11@LB@Position Seed - mRNA 222 -- 228@LB@Position Seed - sRNA 5 -- 11@LB@ |
196 |
0.01921 |
0.3104 |
b2167 |
fruA |
-9.92 |
0.125082 |
150 -- 163 |
5 -- 22 |
fused fructose-specific PTS enzymes: IIBcomponent/IIC components |
|
_____________149________________164\n_____________|__________________|\n5'-CGC...CGCAA__________________GACUU...AAA-3'\n______________UGAUGGC____GCGCGUC\n______________||||::|____|||||||\n______________ACUAUUG____CGCGCAG\n3'-UUU...CUACU_______UUUA_______AAAG-5'\n_____________|__________________|\n_____________23_________________4\n |
157 -- 163 |
5 -- 11 |
-18.2874 kcal/mol |
7.11819 kcal/mol |
1.25155 kcal/mol |
149 164@LB@ | |@LB@5'-CGC...CGCAA GACUU...AAA-3'@LB@ UGAUGGC GCGCGUC@LB@ ||||::| |||||||@LB@ ACUAUUG CGCGCAG@LB@3'-UUU...CUACU UUUA AAAG-5'@LB@ | |@LB@ 23 4@LB@@LB@@LB@Energy -9.92 kcal/mol@LB@Hybridization Energy -18.2874 kcal/mol@LB@Unfolding Energy - mRNA 7.11819 kcal/mol@LB@Unfolding Energy - sRNA 1.25155 kcal/mol@LB@@LB@Position - mRNA 150 -- 163@LB@Position - sRNA 5 -- 22@LB@Position Seed - mRNA 157 -- 163@LB@Position Seed - sRNA 5 -- 11@LB@ |
61 |
0.005608 |
0.3084 |
b2174 |
lpxT |
-9.09 |
0.171357 |
170 -- 179 |
1 -- 10 |
lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase |
|
_____________169________180\n_____________|__________|\n5'-GAA...UUGCC__________AGUAA...CGA-3'\n______________UGCGUUUUUC\n______________:||||:||||\n______________GCGCAGAAAG\n3'-UUU...UUUAC__________-5'\n_____________|_________|\n_____________11________1\n |
173 -- 179 |
1 -- 7 |
-13.1644 kcal/mol |
2.90849 kcal/mol |
1.16635 kcal/mol |
169 180@LB@ | |@LB@5'-GAA...UUGCC AGUAA...CGA-3'@LB@ UGCGUUUUUC@LB@ :||||:||||@LB@ GCGCAGAAAG@LB@3'-UUU...UUUAC -5'@LB@ | |@LB@ 11 1@LB@@LB@@LB@Energy -9.09 kcal/mol@LB@Hybridization Energy -13.1644 kcal/mol@LB@Unfolding Energy - mRNA 2.90849 kcal/mol@LB@Unfolding Energy - sRNA 1.16635 kcal/mol@LB@@LB@Position - mRNA 170 -- 179@LB@Position - sRNA 1 -- 10@LB@Position Seed - mRNA 173 -- 179@LB@Position Seed - sRNA 1 -- 7@LB@ |
197 |
0.01929 |
0.3104 |
b2185 |
rplY |
-8.58 |
0.206984 |
8 -- 20 |
7 -- 19 |
50S ribosomal subunit protein L25 |
|
_____________7_____________21\n_____________|_____________|\n____5'-CCAGUAC_____________AAAAA...GCA-3'\n______________UGGCAGGUGCGUG\n______________|::||::||||:|\n______________AUUGUUUACGCGC\n3'-UUU...CUACU_____________AGAAAG-5'\n_____________|_____________|\n_____________20____________6\n |
14 -- 20 |
7 -- 13 |
-17.3397 kcal/mol |
7.54262 kcal/mol |
1.21943 kcal/mol |
7 21@LB@ | |@LB@ 5'-CCAGUAC AAAAA...GCA-3'@LB@ UGGCAGGUGCGUG@LB@ |::||::||||:|@LB@ AUUGUUUACGCGC@LB@3'-UUU...CUACU AGAAAG-5'@LB@ | |@LB@ 20 6@LB@@LB@@LB@Energy -8.58 kcal/mol@LB@Hybridization Energy -17.3397 kcal/mol@LB@Unfolding Energy - mRNA 7.54262 kcal/mol@LB@Unfolding Energy - sRNA 1.21943 kcal/mol@LB@@LB@Position - mRNA 8 -- 20@LB@Position - sRNA 7 -- 19@LB@Position Seed - mRNA 14 -- 20@LB@Position Seed - sRNA 7 -- 13@LB@ |