67 |
0.006163 |
0.3087 |
b0773 |
ybhB |
-10.36 |
0.105479 |
214 -- 228 |
7 -- 20 |
kinase inhibitor homolog UPF0098 family |
b0545 |
_____________213_____________229\n_____________|_______________|\n5'-UGU...CAUCA_______UC______AUGGC...AUC-3'\n______________GUAACGA__UGCGCG\n______________:||||:|__||||||\n______________UAUUGUU__ACGCGC\n3'-UUU...ACUAC_______U_______AGAAAG-5'\n_____________|_______________|\n_____________21______________6\n |
214 -- 220 |
14 -- 20 |
-16.0436 kcal/mol |
4.44842 kcal/mol |
1.23906 kcal/mol |
213 229@LB@ | |@LB@5'-UGU...CAUCA UC AUGGC...AUC-3'@LB@ GUAACGA UGCGCG@LB@ :||||:| ||||||@LB@ UAUUGUU ACGCGC@LB@3'-UUU...ACUAC U AGAAAG-5'@LB@ | |@LB@ 21 6@LB@@LB@@LB@Energy -10.36 kcal/mol@LB@Hybridization Energy -16.0436 kcal/mol@LB@Unfolding Energy - mRNA 4.44842 kcal/mol@LB@Unfolding Energy - sRNA 1.23906 kcal/mol@LB@@LB@Position - mRNA 214 -- 228@LB@Position - sRNA 7 -- 20@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 14 -- 20@LB@ |
95 |
0.009629 |
0.3104 |
b0781 |
moaA |
-11.57 |
0.065137 |
257 -- 279 |
1 -- 21 |
molybdopterin biosynthesis protein A |
|
_____________256_____________________280\n_____________|_______________________|\n5'-ACG...CUGUC___U__C_________AA_____GUUGC...CGG-3'\n______________GAU_AC_GAUGUGUGU__CUUUC\n______________|||_||_:|||:|:||__|||||\n______________CUA_UG_UUACGCGCA__GAAAG\n3'-UUU...UACUA___U__U________________-5'\n_____________|______________________|\n_____________22_____________________1\n |
266 -- 272 |
6 -- 12 |
-18.6522 kcal/mol |
5.82624 kcal/mol |
1.25763 kcal/mol |
256 280@LB@ | |@LB@5'-ACG...CUGUC U C AA GUUGC...CGG-3'@LB@ GAU AC GAUGUGUGU CUUUC@LB@ ||| || :|||:|:|| |||||@LB@ CUA UG UUACGCGCA GAAAG@LB@3'-UUU...UACUA U U -5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -11.57 kcal/mol@LB@Hybridization Energy -18.6522 kcal/mol@LB@Unfolding Energy - mRNA 5.82624 kcal/mol@LB@Unfolding Energy - sRNA 1.25763 kcal/mol@LB@@LB@Position - mRNA 257 -- 279@LB@Position - sRNA 1 -- 21@LB@Position Seed - mRNA 266 -- 272@LB@Position Seed - sRNA 6 -- 12@LB@ |
8 |
0.000167 |
0.07068 |
b0814 |
ompX |
-11.11 |
0.078421 |
202 -- 223 |
1 -- 22 |
outer membrane protein X |
|
_____________201____________________224\n_____________|______________________|\n5'-CUG...GGUUA___AAAA__U___A________AGCAC...CAC-3'\n______________UGA____AA_UGC_UGUCUUUC\n______________|||____||_|||_:|||||||\n______________ACU____UU_ACG_GCAGAAAG\n3'-UUU...CUACU___AUUG__U___C________-5'\n_____________|_____________________|\n_____________23____________________1\n |
217 -- 223 |
1 -- 7 |
-15.5509 kcal/mol |
3.18554 kcal/mol |
1.25963 kcal/mol |
201 224@LB@ | |@LB@5'-CUG...GGUUA AAAA U A AGCAC...CAC-3'@LB@ UGA AA UGC UGUCUUUC@LB@ ||| || ||| :|||||||@LB@ ACU UU ACG GCAGAAAG@LB@3'-UUU...CUACU AUUG U C -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -11.11 kcal/mol@LB@Hybridization Energy -15.5509 kcal/mol@LB@Unfolding Energy - mRNA 3.18554 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 202 -- 223@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 217 -- 223@LB@Position Seed - sRNA 1 -- 7@LB@ |
77 |
0.007102 |
0.3087 |
b0832 |
gsiD |
-8.78 |
0.192254 |
77 -- 85 |
7 -- 15 |
glutathione ABC transporter permease |
|
_____________76________86\n_____________|_________|\n5'-UUG...CGUAG_________AUUAC...GAU-3'\n______________AAAUGCGUG\n______________|||||||:|\n______________UUUACGCGC\n3'-UUU...UAUUG_________AGAAAG-5'\n_____________|_________|\n_____________16________6\n |
79 -- 85 |
7 -- 13 |
-12.0627 kcal/mol |
2.10506 kcal/mol |
1.17837 kcal/mol |
76 86@LB@ | |@LB@5'-UUG...CGUAG AUUAC...GAU-3'@LB@ AAAUGCGUG@LB@ |||||||:|@LB@ UUUACGCGC@LB@3'-UUU...UAUUG AGAAAG-5'@LB@ | |@LB@ 16 6@LB@@LB@@LB@Energy -8.78 kcal/mol@LB@Hybridization Energy -12.0627 kcal/mol@LB@Unfolding Energy - mRNA 2.10506 kcal/mol@LB@Unfolding Energy - sRNA 1.17837 kcal/mol@LB@@LB@Position - mRNA 77 -- 85@LB@Position - sRNA 7 -- 15@LB@Position Seed - mRNA 79 -- 85@LB@Position Seed - sRNA 7 -- 13@LB@ |
162 |
0.01506 |
0.3104 |
b0871 |
poxB |
-6.02 |
0.481603 |
228 -- 255 |
23 -- 53 |
pyruvate dehydrogenase thiamine triphosphate-binding FAD-binding |
|
_____________227_______________________________256\n_____________|_________________________________|\n5'-CCG...AUAUC_____________________CGG_________AACGC...GUG-3'\n______________GCCAAAA___CA_CUC_GAAU___CAGGGGUGA\n______________|||||||___||_|||_||||___|||||:|||\n______________CGGUUUU___GU_GAG_CUUA___GUCCCUACU\n3'-UUU...CUCAC_______AAA__A___A____A___________ACUAU...AAG-5'\n_____________|_________________________________|\n_____________54________________________________22\n |
249 -- 255 |
23 -- 29 |
-28.0165 kcal/mol |
6.84512 kcal/mol |
15.1535 kcal/mol |
227 256@LB@ | |@LB@5'-CCG...AUAUC CGG AACGC...GUG-3'@LB@ GCCAAAA CA CUC GAAU CAGGGGUGA@LB@ ||||||| || ||| |||| |||||:|||@LB@ CGGUUUU GU GAG CUUA GUCCCUACU@LB@3'-UUU...CUCAC AAA A A A ACUAU...AAG-5'@LB@ | |@LB@ 54 22@LB@@LB@@LB@Energy -6.02 kcal/mol@LB@Hybridization Energy -28.0165 kcal/mol@LB@Unfolding Energy - mRNA 6.84512 kcal/mol@LB@Unfolding Energy - sRNA 15.1535 kcal/mol@LB@@LB@Position - mRNA 228 -- 255@LB@Position - sRNA 23 -- 53@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 23 -- 29@LB@ |
14 |
0.0004057 |
0.09812 |
b0886 |
cydC |
-15.95 |
0.010534 |
194 -- 211 |
2 -- 21 |
glutathione/cysteine ABC transporter export permease/ATPase |
|
_____________193__________________212\n_____________|____________________|\n5'-GCG...GAGGA___U________________GCUAC...UCG-3'\n______________GAU__UAAAUGCGCG_CUUU\n______________|||__:|||||||||_||||\n______________CUA__GUUUACGCGC_GAAA\n3'-UUU...UACUA___UU__________A____G-5'\n_____________|____________________|\n_____________22___________________1\n |
201 -- 207 |
7 -- 13 |
-19.6155 kcal/mol |
2.41081 kcal/mol |
1.25756 kcal/mol |
193 212@LB@ | |@LB@5'-GCG...GAGGA U GCUAC...UCG-3'@LB@ GAU UAAAUGCGCG CUUU@LB@ ||| :||||||||| ||||@LB@ CUA GUUUACGCGC GAAA@LB@3'-UUU...UACUA UU A G-5'@LB@ | |@LB@ 22 1@LB@@LB@@LB@Energy -15.95 kcal/mol@LB@Hybridization Energy -19.6155 kcal/mol@LB@Unfolding Energy - mRNA 2.41081 kcal/mol@LB@Unfolding Energy - sRNA 1.25756 kcal/mol@LB@@LB@Position - mRNA 194 -- 211@LB@Position - sRNA 2 -- 21@LB@Position Seed - mRNA 201 -- 207@LB@Position Seed - sRNA 7 -- 13@LB@ |
41 |
0.00276 |
0.2279 |
b0889 |
lrp |
-10.49 |
0.100208 |
207 -- 221 |
8 -- 21 |
leucine-responsive global transcriptional regulator |
|
_____________206_____________222\n_____________|_______________|\n5'-GUG...UGGUA_________AA____CCUGG...AGC-3'\n______________GAUAGCAAG__GCGC\n______________||||:|||:__||||\n______________CUAUUGUUU__CGCG\n3'-UUU...UACUA_________A_____CAGAAAG-5'\n_____________|_______________|\n_____________22______________7\n |
209 -- 215 |
13 -- 19 |
-15.2704 kcal/mol |
3.5472 kcal/mol |
1.23638 kcal/mol |
206 222@LB@ | |@LB@5'-GUG...UGGUA AA CCUGG...AGC-3'@LB@ GAUAGCAAG GCGC@LB@ ||||:|||: ||||@LB@ CUAUUGUUU CGCG@LB@3'-UUU...UACUA A CAGAAAG-5'@LB@ | |@LB@ 22 7@LB@@LB@@LB@Energy -10.49 kcal/mol@LB@Hybridization Energy -15.2704 kcal/mol@LB@Unfolding Energy - mRNA 3.5472 kcal/mol@LB@Unfolding Energy - sRNA 1.23638 kcal/mol@LB@@LB@Position - mRNA 207 -- 221@LB@Position - sRNA 8 -- 21@LB@Position Seed - mRNA 209 -- 215@LB@Position Seed - sRNA 13 -- 19@LB@ |
157 |
0.01467 |
0.3104 |
b0906 |
ycaP |
-12.44 |
0.045773 |
54 -- 69 |
5 -- 18 |
UPF0702 family putative inner membrane protein |
|
_____________53_______________70\n_____________|________________|\n5'-AGU...CCGGG_________UU_____AUGAA...UCU-3'\n______________GAUAAAUGU__GCGUC\n______________:|:|||||:__|||||\n______________UUGUUUACG__CGCAG\n3'-UUU...UACUA________________AAAG-5'\n_____________|________________|\n_____________19_______________4\n |
56 -- 62 |
10 -- 16 |
-16.0437 kcal/mol |
2.38303 kcal/mol |
1.2243 kcal/mol |
53 70@LB@ | |@LB@5'-AGU...CCGGG UU AUGAA...UCU-3'@LB@ GAUAAAUGU GCGUC@LB@ :|:|||||: |||||@LB@ UUGUUUACG CGCAG@LB@3'-UUU...UACUA AAAG-5'@LB@ | |@LB@ 19 4@LB@@LB@@LB@Energy -12.44 kcal/mol@LB@Hybridization Energy -16.0437 kcal/mol@LB@Unfolding Energy - mRNA 2.38303 kcal/mol@LB@Unfolding Energy - sRNA 1.2243 kcal/mol@LB@@LB@Position - mRNA 54 -- 69@LB@Position - sRNA 5 -- 18@LB@Position Seed - mRNA 56 -- 62@LB@Position Seed - sRNA 10 -- 16@LB@ |
85 |
0.008151 |
0.3104 |
b0914 |
msbA |
-12.09 |
0.052799 |
181 -- 198 |
1 -- 18 |
lipid ABC transporter permease/ATPase |
|
_____________180________________199\n_____________|__________________|\n5'-AGC...AUUUC_________UG_______GAAUG...CGU-3'\n______________AACAAAUGC__GUUUUUU\n______________|||||||||__||:|||:\n______________UUGUUUACG__CAGAAAG\n3'-UUU...UACUA_________CG_______-5'\n_____________|_________________|\n_____________19________________1\n |
192 -- 198 |
1 -- 7 |
-16.7201 kcal/mol |
3.39277 kcal/mol |
1.24077 kcal/mol |
180 199@LB@ | |@LB@5'-AGC...AUUUC UG GAAUG...CGU-3'@LB@ AACAAAUGC GUUUUUU@LB@ ||||||||| ||:|||:@LB@ UUGUUUACG CAGAAAG@LB@3'-UUU...UACUA CG -5'@LB@ | |@LB@ 19 1@LB@@LB@@LB@Energy -12.09 kcal/mol@LB@Hybridization Energy -16.7201 kcal/mol@LB@Unfolding Energy - mRNA 3.39277 kcal/mol@LB@Unfolding Energy - sRNA 1.24077 kcal/mol@LB@@LB@Position - mRNA 181 -- 198@LB@Position - sRNA 1 -- 18@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 1 -- 7@LB@ |
120 |
0.01222 |
0.3104 |
b0916 |
ycaQ |
-9.32 |
0.156865 |
225 -- 243 |
1 -- 17 |
DUF1006 family protein with C-terminal wHTH domain |
|
_____________224_________________244\n_____________|___________________|\n5'-UGG...CCCUU__U_________AAUC___ACCUU...AUA-3'\n______________GC_GAUGCGCGU____UUC\n______________:|_:||||||||____|||\n______________UG_UUACGCGCA____AAG\n3'-UUU...ACUAU__U_________GA_____-5'\n_____________|__________________|\n_____________18_________________1\n |
230 -- 236 |
6 -- 12 |
-16.5738 kcal/mol |
6.00902 kcal/mol |
1.23994 kcal/mol |
224 244@LB@ | |@LB@5'-UGG...CCCUU U AAUC ACCUU...AUA-3'@LB@ GC GAUGCGCGU UUC@LB@ :| :|||||||| |||@LB@ UG UUACGCGCA AAG@LB@3'-UUU...ACUAU U GA -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -9.32 kcal/mol@LB@Hybridization Energy -16.5738 kcal/mol@LB@Unfolding Energy - mRNA 6.00902 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 225 -- 243@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 230 -- 236@LB@Position Seed - sRNA 6 -- 12@LB@ |