149 |
0.01422 |
0.3104 |
b0415 |
ribE |
-7.20 |
0.333957 |
258 -- 265 |
4 -- 11 |
riboflavin synthase beta chain |
|
_____________257______266\n_____________|________|\n5'-CGG...CCAUC________CAACA...GUG-3'\n______________GCGCGUUU\n______________||||||:|\n______________CGCGCAGA\n3'-UUU...GUUUA________AAG-5'\n_____________|________|\n_____________12_______3\n |
259 -- 265 |
4 -- 10 |
-13.1965 kcal/mol |
4.83677 kcal/mol |
1.15639 kcal/mol |
257 266@LB@ | |@LB@5'-CGG...CCAUC CAACA...GUG-3'@LB@ GCGCGUUU@LB@ ||||||:|@LB@ CGCGCAGA@LB@3'-UUU...GUUUA AAG-5'@LB@ | |@LB@ 12 3@LB@@LB@@LB@Energy -7.20 kcal/mol@LB@Hybridization Energy -13.1965 kcal/mol@LB@Unfolding Energy - mRNA 4.83677 kcal/mol@LB@Unfolding Energy - sRNA 1.15639 kcal/mol@LB@@LB@Position - mRNA 258 -- 265@LB@Position - sRNA 4 -- 11@LB@Position Seed - mRNA 259 -- 265@LB@Position Seed - sRNA 4 -- 10@LB@ |
176 |
0.01748 |
0.3104 |
b0435 |
bolA |
-9.78 |
0.131850 |
202 -- 220 |
4 -- 22 |
stationary-phase morphogene transcriptional repressor for mreB; also regulator for dacA dacC and ampC |
|
_____________201_________________221\n_____________|___________________|\n5'-UGA...UUUCA________C___A___GA_AGAAG...CCG-3'\n______________UGAUGAUA_GUG_GCG__U\n______________||||:|:|_:||_|||__|\n______________ACUAUUGU_UAC_CGC__A\n3'-UUU...CUACU________U___G___AG_AAG-5'\n_____________|___________________|\n_____________23__________________3\n |
203 -- 209 |
15 -- 21 |
-14.8727 kcal/mol |
3.8346 kcal/mol |
1.2572 kcal/mol |
201 221@LB@ | |@LB@5'-UGA...UUUCA C A GA AGAAG...CCG-3'@LB@ UGAUGAUA GUG GCG U@LB@ ||||:|:| :|| ||| |@LB@ ACUAUUGU UAC CGC A@LB@3'-UUU...CUACU U G AG AAG-5'@LB@ | |@LB@ 23 3@LB@@LB@@LB@Energy -9.78 kcal/mol@LB@Hybridization Energy -14.8727 kcal/mol@LB@Unfolding Energy - mRNA 3.8346 kcal/mol@LB@Unfolding Energy - sRNA 1.2572 kcal/mol@LB@@LB@Position - mRNA 202 -- 220@LB@Position - sRNA 4 -- 22@LB@Position Seed - mRNA 203 -- 209@LB@Position Seed - sRNA 15 -- 21@LB@ |
38 |
0.002512 |
0.2224 |
b0436 |
tig |
-7.88 |
0.265562 |
192 -- 204 |
10 -- 21 |
peptidyl-prolyl cis/trans isomerase (trigger factor) |
|
_____________191___________205\n_____________|_____________|\n5'-UAC...UUUGA_______A_____AAGUU...UCA-3'\n______________GGUAACA_GAUGC\n______________|:|||||_:||||\n______________CUAUUGU_UUACG\n3'-UUU...UACUA_____________CGCAG...AAG-5'\n_____________|_____________|\n_____________22____________9\n |
192 -- 198 |
15 -- 21 |
-12.2618 kcal/mol |
3.15229 kcal/mol |
1.23076 kcal/mol |
191 205@LB@ | |@LB@5'-UAC...UUUGA A AAGUU...UCA-3'@LB@ GGUAACA GAUGC@LB@ |:||||| :||||@LB@ CUAUUGU UUACG@LB@3'-UUU...UACUA CGCAG...AAG-5'@LB@ | |@LB@ 22 9@LB@@LB@@LB@Energy -7.88 kcal/mol@LB@Hybridization Energy -12.2618 kcal/mol@LB@Unfolding Energy - mRNA 3.15229 kcal/mol@LB@Unfolding Energy - sRNA 1.23076 kcal/mol@LB@@LB@Position - mRNA 192 -- 204@LB@Position - sRNA 10 -- 21@LB@Position Seed - mRNA 192 -- 198@LB@Position Seed - sRNA 15 -- 21@LB@ |
27 |
0.001549 |
0.1943 |
b0440 |
hupB |
-11.81 |
0.059023 |
134 -- 149 |
5 -- 20 |
HU DNA-binding transcriptional regulator beta subunit |
|
_____________133______________150\n_____________|________________|\n5'-CGC...CUGAU_____UGC________CGUAC...CUG-3'\n______________AUAAC___UGCGCGUU\n______________|||||___|||||||:\n______________UAUUG___ACGCGCAG\n3'-UUU...ACUAC_____UUU________AAAG-5'\n_____________|________________|\n_____________21_______________4\n |
143 -- 149 |
5 -- 11 |
-15.9939 kcal/mol |
2.93365 kcal/mol |
1.24804 kcal/mol |
133 150@LB@ | |@LB@5'-CGC...CUGAU UGC CGUAC...CUG-3'@LB@ AUAAC UGCGCGUU@LB@ ||||| |||||||:@LB@ UAUUG ACGCGCAG@LB@3'-UUU...ACUAC UUU AAAG-5'@LB@ | |@LB@ 21 4@LB@@LB@@LB@Energy -11.81 kcal/mol@LB@Hybridization Energy -15.9939 kcal/mol@LB@Unfolding Energy - mRNA 2.93365 kcal/mol@LB@Unfolding Energy - sRNA 1.24804 kcal/mol@LB@@LB@Position - mRNA 134 -- 149@LB@Position - sRNA 5 -- 20@LB@Position Seed - mRNA 143 -- 149@LB@Position Seed - sRNA 5 -- 11@LB@ |
147 |
0.01411 |
0.3104 |
b0441 |
ppiD |
-10.51 |
0.099467 |
81 -- 98 |
3 -- 21 |
periplasmic folding chaperone has an inactive PPIase domain |
|
_____________80__________________99\n_____________|___________________|\n5'-GUA...UAUUC______UUUC_________GUGGG...ACC-3'\n______________GGUGAC_____UGCGUCUU\n______________|:|:||_____:|||||||\n______________CUAUUG_____GCGCAGAA\n3'-UUU...UACUA______UUUAC________AG-5'\n_____________|___________________|\n_____________22__________________2\n |
92 -- 98 |
3 -- 9 |
-17.0331 kcal/mol |
5.27038 kcal/mol |
1.257 kcal/mol |
80 99@LB@ | |@LB@5'-GUA...UAUUC UUUC GUGGG...ACC-3'@LB@ GGUGAC UGCGUCUU@LB@ |:|:|| :|||||||@LB@ CUAUUG GCGCAGAA@LB@3'-UUU...UACUA UUUAC AG-5'@LB@ | |@LB@ 22 2@LB@@LB@@LB@Energy -10.51 kcal/mol@LB@Hybridization Energy -17.0331 kcal/mol@LB@Unfolding Energy - mRNA 5.27038 kcal/mol@LB@Unfolding Energy - sRNA 1.257 kcal/mol@LB@@LB@Position - mRNA 81 -- 98@LB@Position - sRNA 3 -- 21@LB@Position Seed - mRNA 92 -- 98@LB@Position Seed - sRNA 3 -- 9@LB@ |
89 |
0.009028 |
0.3104 |
b0529 |
folD |
-8.62 |
0.203566 |
239 -- 251 |
4 -- 17 |
bifunctional 5 10-methylene-tetrahydrofolate dehydrogenase/ 5 10-methylene-tetrahydrofolate cyclohydrolase |
|
_____________238____________252\n_____________|______________|\n5'-CAA...GCGCA______________GAAGU...CAC-3'\n______________GCAGGUGCGC_UCU\n______________:||::|||||_|||\n______________UGUUUACGCG_AGA\n3'-UUU...ACUAU__________C___AAG-5'\n_____________|______________|\n_____________18_____________3\n |
242 -- 248 |
8 -- 14 |
-17.587 kcal/mol |
7.73476 kcal/mol |
1.22888 kcal/mol |
238 252@LB@ | |@LB@5'-CAA...GCGCA GAAGU...CAC-3'@LB@ GCAGGUGCGC UCU@LB@ :||::||||| |||@LB@ UGUUUACGCG AGA@LB@3'-UUU...ACUAU C AAG-5'@LB@ | |@LB@ 18 3@LB@@LB@@LB@Energy -8.62 kcal/mol@LB@Hybridization Energy -17.587 kcal/mol@LB@Unfolding Energy - mRNA 7.73476 kcal/mol@LB@Unfolding Energy - sRNA 1.22888 kcal/mol@LB@@LB@Position - mRNA 239 -- 251@LB@Position - sRNA 4 -- 17@LB@Position Seed - mRNA 242 -- 248@LB@Position Seed - sRNA 8 -- 14@LB@ |
22 |
0.001004 |
0.1545 |
b0583 |
entD |
-18.10 |
0.004183 |
41 -- 63 |
1 -- 22 |
phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
|
_____________40______________________64\n_____________|_______________________|\n5'-AUA...CAGAU__U____A___________G___AUGCC...UGC-3'\n______________UG_UGAC_AAGUGCGCGUC_UUC\n______________||_|:||_||:||||||||_|||\n______________AC_AUUG_UUUACGCGCAG_AAG\n3'-UUU...CUACU__U________________A___-5'\n_____________|______________________|\n_____________23_____________________1\n |
53 -- 59 |
5 -- 11 |
-24.6004 kcal/mol |
5.24265 kcal/mol |
1.25963 kcal/mol |
40 64@LB@ | |@LB@5'-AUA...CAGAU U A G AUGCC...UGC-3'@LB@ UG UGAC AAGUGCGCGUC UUC@LB@ || |:|| ||:|||||||| |||@LB@ AC AUUG UUUACGCGCAG AAG@LB@3'-UUU...CUACU U A -5'@LB@ | |@LB@ 23 1@LB@@LB@@LB@Energy -18.10 kcal/mol@LB@Hybridization Energy -24.6004 kcal/mol@LB@Unfolding Energy - mRNA 5.24265 kcal/mol@LB@Unfolding Energy - sRNA 1.25963 kcal/mol@LB@@LB@Position - mRNA 41 -- 63@LB@Position - sRNA 1 -- 22@LB@Position Seed - mRNA 53 -- 59@LB@Position Seed - sRNA 5 -- 11@LB@ |
45 |
0.00309 |
0.2325 |
b0584 |
fepA |
-13.78 |
0.026215 |
91 -- 106 |
1 -- 17 |
ferrienterobactin outer membrane transporter |
|
_____________90________________107\n_____________|_________________|\n5'-GAA...CAACU___C_____________AGGAU...ACG-3'\n______________GCA__UGCGUGUCUUUC\n______________:||__||||:|||||||\n______________UGU__ACGCGCAGAAAG\n3'-UUU...ACUAU___UU____________-5'\n_____________|________________|\n_____________18_______________1\n |
100 -- 106 |
1 -- 7 |
-21.1338 kcal/mol |
6.10916 kcal/mol |
1.23994 kcal/mol |
90 107@LB@ | |@LB@5'-GAA...CAACU C AGGAU...ACG-3'@LB@ GCA UGCGUGUCUUUC@LB@ :|| ||||:|||||||@LB@ UGU ACGCGCAGAAAG@LB@3'-UUU...ACUAU UU -5'@LB@ | |@LB@ 18 1@LB@@LB@@LB@Energy -13.78 kcal/mol@LB@Hybridization Energy -21.1338 kcal/mol@LB@Unfolding Energy - mRNA 6.10916 kcal/mol@LB@Unfolding Energy - sRNA 1.23994 kcal/mol@LB@@LB@Position - mRNA 91 -- 106@LB@Position - sRNA 1 -- 17@LB@Position Seed - mRNA 100 -- 106@LB@Position Seed - sRNA 1 -- 7@LB@ |
180 |
0.01774 |
0.3104 |
b0593 |
entC |
-14.03 |
0.023631 |
112 -- 128 |
4 -- 19 |
isochorismate synthase 1 |
|
_____________111_______________129\n_____________|_________________|\n5'-GGC...AGAGU_____U___________GCUUU...CAG-3'\n______________UGACA_AGUGCGCGUUU\n______________|:|||_|:|||||||:|\n______________AUUGU_UUACGCGCAGA\n3'-UUU...CUACU_________________AAG-5'\n_____________|_________________|\n_____________20________________3\n |
122 -- 128 |
4 -- 10 |
-18.4725 kcal/mol |
3.19872 kcal/mol |
1.2406 kcal/mol |
111 129@LB@ | |@LB@5'-GGC...AGAGU U GCUUU...CAG-3'@LB@ UGACA AGUGCGCGUUU@LB@ |:||| |:|||||||:|@LB@ AUUGU UUACGCGCAGA@LB@3'-UUU...CUACU AAG-5'@LB@ | |@LB@ 20 3@LB@@LB@@LB@Energy -14.03 kcal/mol@LB@Hybridization Energy -18.4725 kcal/mol@LB@Unfolding Energy - mRNA 3.19872 kcal/mol@LB@Unfolding Energy - sRNA 1.2406 kcal/mol@LB@@LB@Position - mRNA 112 -- 128@LB@Position - sRNA 4 -- 19@LB@Position Seed - mRNA 122 -- 128@LB@Position Seed - sRNA 4 -- 10@LB@ |
47 |
0.003448 |
0.2484 |
b0614 |
citX |
-10.13 |
0.115098 |
76 -- 91 |
4 -- 17 |
apo-citrate lyase phosphoribosyl-dephospho-CoA transferase |
|
_____________75_______________92\n_____________|________________|\n5'-UUA...GCUGC____AC__________GCUGA...UCA-3'\n______________GCGA__GUGCGCGUCU\n______________:|:|__:|||||||||\n______________UGUU__UACGCGCAGA\n3'-UUU...ACUAU________________AAG-5'\n_____________|________________|\n_____________18_______________3\n |
85 -- 91 |
4 -- 10 |
-19.1919 kcal/mol |
7.83057 kcal/mol |
1.22888 kcal/mol |
75 92@LB@ | |@LB@5'-UUA...GCUGC AC GCUGA...UCA-3'@LB@ GCGA GUGCGCGUCU@LB@ :|:| :|||||||||@LB@ UGUU UACGCGCAGA@LB@3'-UUU...ACUAU AAG-5'@LB@ | |@LB@ 18 3@LB@@LB@@LB@Energy -10.13 kcal/mol@LB@Hybridization Energy -19.1919 kcal/mol@LB@Unfolding Energy - mRNA 7.83057 kcal/mol@LB@Unfolding Energy - sRNA 1.22888 kcal/mol@LB@@LB@Position - mRNA 76 -- 91@LB@Position - sRNA 4 -- 17@LB@Position Seed - mRNA 85 -- 91@LB@Position Seed - sRNA 4 -- 10@LB@ |