| 1 |
6.997e-05 |
0.03358 |
ct_198 |
oppA_3 |
-8.59 |
0.062291 |
189 -- 206 |
17 -- 33 |
oligopeptide ABC transporter substrate-binding protein |
|
_____________188________________207\n_____________|__________________|\n5'-AAA...UCUAA______C________C__AAGAU...CUC-3'\n______________GGAGGU_AUUCCAUG_GC\n______________:||:|:_||||||||_||\n______________UCUUCG_UAAGGUAC_CG\n3'-UUU...CUCAG______A___________CAAUC...GAA-5'\n_____________|__________________|\n_____________34_________________16\n |
197 -- 203 |
19 -- 25 |
-19.6111 kcal/mol |
6.04348 kcal/mol |
4.97804 kcal/mol |
188 207@LB@ | |@LB@5'-AAA...UCUAA C C AAGAU...CUC-3'@LB@ GGAGGU AUUCCAUG GC@LB@ :||:|: |||||||| ||@LB@ UCUUCG UAAGGUAC CG@LB@3'-UUU...CUCAG A CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -8.59 kcal/mol@LB@Hybridization Energy -19.6111 kcal/mol@LB@Unfolding Energy - mRNA 6.04348 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 189 -- 206@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 197 -- 203@LB@Position Seed - sRNA 19 -- 25@LB@ |
| 2 |
8.171e-05 |
0.03358 |
ct_802 |
rs18 |
-7.95 |
0.088258 |
66 -- 79 |
21 -- 34 |
30S ribosomal protein S18 |
|
_____________65_____________80\n_____________|______________|\n5'-GUU...AGCCC__________CG__GAGUU...UUA-3'\n______________CAGAAGCUAU__CA\n______________||||||||||__||\n______________GUCUUCGAUA__GU\n3'-UUU...UCUCA__________AG__ACCGC...GAA-5'\n_____________|______________|\n_____________35_____________20\n |
68 -- 74 |
26 -- 32 |
-17.0234 kcal/mol |
4.34679 kcal/mol |
4.73132 kcal/mol |
65 80@LB@ | |@LB@5'-GUU...AGCCC CG GAGUU...UUA-3'@LB@ CAGAAGCUAU CA@LB@ |||||||||| ||@LB@ GUCUUCGAUA GU@LB@3'-UUU...UCUCA AG ACCGC...GAA-5'@LB@ | |@LB@ 35 20@LB@@LB@@LB@Energy -7.95 kcal/mol@LB@Hybridization Energy -17.0234 kcal/mol@LB@Unfolding Energy - mRNA 4.34679 kcal/mol@LB@Unfolding Energy - sRNA 4.73132 kcal/mol@LB@@LB@Position - mRNA 66 -- 79@LB@Position - sRNA 21 -- 34@LB@Position Seed - mRNA 68 -- 74@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 3 |
0.0003482 |
0.07439 |
ct_023 |
prfA |
-10.22 |
0.024627 |
158 -- 204 |
18 -- 56 |
peptide chain release factor |
|
_____________157_____________________________________________205\n_____________|_______________________________________________|\n5'-GAA...CUGGU______UAG_G____________AAAGG______AAGUCG_______AAAUA...CGC-3'\n______________CUUUGU___A_AGAUACUAGAGU_____CAGAAG______UUCAUGG\n______________|::|||___|_|:|:||||||||_____||||||______|:|||||\n______________GGGACA___U_UUUGUGAUCUCA_____GUCUUC______AGGUACC\n3'-UUU...AAGGG______CA__G_______________________GAUA_________GCAAU...GAA-5'\n_____________|_______________________________________________|\n_____________57______________________________________________17\n |
198 -- 204 |
18 -- 24 |
-35.7937 kcal/mol |
12.6341 kcal/mol |
12.9359 kcal/mol |
157 205@LB@ | |@LB@5'-GAA...CUGGU UAG G AAAGG AAGUCG AAAUA...CGC-3'@LB@ CUUUGU A AGAUACUAGAGU CAGAAG UUCAUGG@LB@ |::||| | |:|:|||||||| |||||| |:|||||@LB@ GGGACA U UUUGUGAUCUCA GUCUUC AGGUACC@LB@3'-UUU...AAGGG CA G GAUA GCAAU...GAA-5'@LB@ | |@LB@ 57 17@LB@@LB@@LB@Energy -10.22 kcal/mol@LB@Hybridization Energy -35.7937 kcal/mol@LB@Unfolding Energy - mRNA 12.6341 kcal/mol@LB@Unfolding Energy - sRNA 12.9359 kcal/mol@LB@@LB@Position - mRNA 158 -- 204@LB@Position - sRNA 18 -- 56@LB@Position Seed - mRNA 198 -- 204@LB@Position Seed - sRNA 18 -- 24@LB@ |
| 4 |
0.0004436 |
0.07439 |
ct_864 |
xerD |
-16.31 |
0.000480 |
24 -- 38 |
17 -- 31 |
site-specific tyrosine recombinase XerD |
|
_____________23______________39\n_____________|_______________|\n5'-CAU...AUGGA_______________ACCUU...AUU-3'\n______________GAGCUAUUCCAUGGU\n______________:|||||||||||||:\n______________UUCGAUAAGGUACCG\n3'-UUU...CAGUC_______________CAAUC...GAA-5'\n_____________|_______________|\n_____________32______________16\n |
32 -- 38 |
17 -- 23 |
-24.2689 kcal/mol |
3.09995 kcal/mol |
4.86101 kcal/mol |
23 39@LB@ | |@LB@5'-CAU...AUGGA ACCUU...AUU-3'@LB@ GAGCUAUUCCAUGGU@LB@ :|||||||||||||:@LB@ UUCGAUAAGGUACCG@LB@3'-UUU...CAGUC CAAUC...GAA-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -16.31 kcal/mol@LB@Hybridization Energy -24.2689 kcal/mol@LB@Unfolding Energy - mRNA 3.09995 kcal/mol@LB@Unfolding Energy - sRNA 4.86101 kcal/mol@LB@@LB@Position - mRNA 24 -- 38@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 32 -- 38@LB@Position Seed - sRNA 17 -- 23@LB@ |
| 5 |
0.0004969 |
0.07439 |
ct_056 |
N/A |
-17.69 |
0.000175 |
196 -- 255 |
6 -- 56 |
|
|
_____________195________________________________________________________________256\n_____________|__________________________________________________________________|\n5'-GUG...AGGAU_____AU__________CCCU__C______UUACGUAAACAGACAU_______A____________UUCCU...AAG-3'\n______________CCCUG______GACACU____UC_GAAGCU________________UUCC_UG__GUUAGAAUACC\n______________|||||______:|||||____||_||||||________________||||_||__|||||||||||\n______________GGGAC______UUGUGA____AG_CUUCGA________________AAGG_AC__CAAUCUUAUGG\n3'-UUU...AAGGG_____ACAUGU______UCUC__U______U___________________U__CG___________UUGAA-5'\n_____________|__________________________________________________________________|\n_____________57_________________________________________________________________5\n |
249 -- 255 |
6 -- 12 |
-39.697 kcal/mol |
5.45688 kcal/mol |
16.5497 kcal/mol |
195 256@LB@ | |@LB@5'-GUG...AGGAU AU CCCU C UUACGUAAACAGACAU A UUCCU...AAG-3'@LB@ CCCUG GACACU UC GAAGCU UUCC UG GUUAGAAUACC@LB@ ||||| :||||| || |||||| |||| || |||||||||||@LB@ GGGAC UUGUGA AG CUUCGA AAGG AC CAAUCUUAUGG@LB@3'-UUU...AAGGG ACAUGU UCUC U U U CG UUGAA-5'@LB@ | |@LB@ 57 5@LB@@LB@@LB@Energy -17.69 kcal/mol@LB@Hybridization Energy -39.697 kcal/mol@LB@Unfolding Energy - mRNA 5.45688 kcal/mol@LB@Unfolding Energy - sRNA 16.5497 kcal/mol@LB@@LB@Position - mRNA 196 -- 255@LB@Position - sRNA 6 -- 56@LB@Position Seed - mRNA 249 -- 255@LB@Position Seed - sRNA 6 -- 12@LB@ |
| 6 |
0.000543 |
0.07439 |
ct_280 |
nqr4 |
-8.45 |
0.067322 |
89 -- 131 |
2 -- 35 |
Na(+)-translocating NADH-quinone reductase subunit D |
|
_____________88___________________________________________132\n_____________|____________________________________________|\n5'-GAC...GAAUU__________C___GACUUGUA_________CC_______UU__CUCAU...CGG-3'\n______________UCAGGAGCUA_UUU________AUGGUGUUA__GAAU_CC__CU\n______________||||:|||||_|::________||||:||||__||||_||__||\n______________AGUCUUCGAU_AGG________UACCGCAAU__CUUA_GG__GA\n3'-UUU...AUCUC__________A__________________________U__UU__A-5'\n_____________|____________________________________________|\n_____________36___________________________________________1\n |
113 -- 119 |
13 -- 19 |
-28.603 kcal/mol |
11.5634 kcal/mol |
8.59199 kcal/mol |
88 132@LB@ | |@LB@5'-GAC...GAAUU C GACUUGUA CC UU CUCAU...CGG-3'@LB@ UCAGGAGCUA UUU AUGGUGUUA GAAU CC CU@LB@ ||||:||||| |:: ||||:|||| |||| || ||@LB@ AGUCUUCGAU AGG UACCGCAAU CUUA GG GA@LB@3'-UUU...AUCUC A U UU A-5'@LB@ | |@LB@ 36 1@LB@@LB@@LB@Energy -8.45 kcal/mol@LB@Hybridization Energy -28.603 kcal/mol@LB@Unfolding Energy - mRNA 11.5634 kcal/mol@LB@Unfolding Energy - sRNA 8.59199 kcal/mol@LB@@LB@Position - mRNA 89 -- 131@LB@Position - sRNA 2 -- 35@LB@Position Seed - mRNA 113 -- 119@LB@Position Seed - sRNA 13 -- 19@LB@ |
| 7 |
0.0007305 |
0.07962 |
ct_505 |
gapA |
-11.17 |
0.013986 |
23 -- 47 |
19 -- 39 |
glyceraldehyde-3-phosphate dehydrogenase |
|
_____________22________________________48\n_____________|_________________________|\n5'-GUC...AUAGA______AUUG___________G___UGUUA...AUU-3'\n______________AGAGUC____GGAAGUUAUUU_AUG\n______________||||||____:||||:||||:_|||\n______________UCUCAG____UCUUCGAUAAG_UAC\n3'-UUU...UGUGA_____________________G___CGCAA...GAA-5'\n_____________|_________________________|\n_____________40________________________18\n |
34 -- 40 |
26 -- 32 |
-23.0041 kcal/mol |
2.2627 kcal/mol |
9.5668 kcal/mol |
22 48@LB@ | |@LB@5'-GUC...AUAGA AUUG G UGUUA...AUU-3'@LB@ AGAGUC GGAAGUUAUUU AUG@LB@ |||||| :||||:||||: |||@LB@ UCUCAG UCUUCGAUAAG UAC@LB@3'-UUU...UGUGA G CGCAA...GAA-5'@LB@ | |@LB@ 40 18@LB@@LB@@LB@Energy -11.17 kcal/mol@LB@Hybridization Energy -23.0041 kcal/mol@LB@Unfolding Energy - mRNA 2.2627 kcal/mol@LB@Unfolding Energy - sRNA 9.5668 kcal/mol@LB@@LB@Position - mRNA 23 -- 47@LB@Position - sRNA 19 -- 39@LB@Position Seed - mRNA 34 -- 40@LB@Position Seed - sRNA 26 -- 32@LB@ |
| 8 |
0.0008373 |
0.07962 |
ct_066 |
N/A |
-11.14 |
0.014316 |
190 -- 205 |
17 -- 33 |
|
|
_____________189_______________206\n_____________|_________________|\n5'-UUU...CACUA_________________UACGG...GUU-3'\n______________AGGAGCUAUUC_AUGGC\n______________||:||||||||_|||||\n______________UCUUCGAUAAG_UACCG\n3'-UUU...CUCAG___________G_____CAAUC...GAA-5'\n_____________|_________________|\n_____________34________________16\n |
194 -- 200 |
23 -- 29 |
-22.6652 kcal/mol |
6.55112 kcal/mol |
4.97804 kcal/mol |
189 206@LB@ | |@LB@5'-UUU...CACUA UACGG...GUU-3'@LB@ AGGAGCUAUUC AUGGC@LB@ ||:|||||||| |||||@LB@ UCUUCGAUAAG UACCG@LB@3'-UUU...CUCAG G CAAUC...GAA-5'@LB@ | |@LB@ 34 16@LB@@LB@@LB@Energy -11.14 kcal/mol@LB@Hybridization Energy -22.6652 kcal/mol@LB@Unfolding Energy - mRNA 6.55112 kcal/mol@LB@Unfolding Energy - sRNA 4.97804 kcal/mol@LB@@LB@Position - mRNA 190 -- 205@LB@Position - sRNA 17 -- 33@LB@Position Seed - mRNA 194 -- 200@LB@Position Seed - sRNA 23 -- 29@LB@ |
| 9 |
0.0008717 |
0.07962 |
ct_743 |
hctA |
-7.87 |
0.092034 |
214 -- 220 |
82 -- 88 |
histone H1-like protein |
|
_____________213_____221\n_____________|_______|\n5'-GUU...AAAAG_______AAAAA...AAA-3'\n______________AUACGGC\n______________|||||||\n______________UAUGCCG\n3'-UUU...GCCUC_______AUUGA...GAA-5'\n_____________|_______|\n_____________89______81\n |
214 -- 220 |
82 -- 88 |
-10.5788 kcal/mol |
1.61458 kcal/mol |
1.09753 kcal/mol |
213 221@LB@ | |@LB@5'-GUU...AAAAG AAAAA...AAA-3'@LB@ AUACGGC@LB@ |||||||@LB@ UAUGCCG@LB@3'-UUU...GCCUC AUUGA...GAA-5'@LB@ | |@LB@ 89 81@LB@@LB@@LB@Energy -7.87 kcal/mol@LB@Hybridization Energy -10.5788 kcal/mol@LB@Unfolding Energy - mRNA 1.61458 kcal/mol@LB@Unfolding Energy - sRNA 1.09753 kcal/mol@LB@@LB@Position - mRNA 214 -- 220@LB@Position - sRNA 82 -- 88@LB@Position Seed - mRNA 214 -- 220@LB@Position Seed - sRNA 82 -- 88@LB@ |
| 10 |
0.001873 |
0.154 |
ct_367 |
aroL |
-15.55 |
0.000817 |
132 -- 208 |
3 -- 59 |
shikimate kinase |
|
_____________131_______________________________________________________________________________209\n_____________|_________________________________________________________________________________|\n5'-UGU...ACAAA_______CUGUAACACACA___________________UUCCA__________AUUGCA___C____CACUAC________GUUCG...UGC-3'\n______________CCCUCCU____________GUGUAUAAAUA__AGAGUU______UAUUUCGUG______GCG__AGA______AUGCCAAC\n______________|||:|||____________|||||:|||:|__|||||:______||||:|:||______|||__|||______||:|||||\n______________GGGGGGA____________CACAUGUUUGU__UCUCAG______AUAAGGUAC______CGC__UCU______UAUGGUUG\n3'-UUU...CUGAA______________________________GA______UCUUCG__________________AA_________________AA-5'\n_____________|_________________________________________________________________________________|\n_____________60________________________________________________________________________________2\n |
202 -- 208 |
3 -- 9 |
-46.252 kcal/mol |
13.1534 kcal/mol |
17.5467 kcal/mol |
131 209@LB@ | |@LB@5'-UGU...ACAAA CUGUAACACACA UUCCA AUUGCA C CACUAC GUUCG...UGC-3'@LB@ CCCUCCU GUGUAUAAAUA AGAGUU UAUUUCGUG GCG AGA AUGCCAAC@LB@ |||:||| |||||:|||:| |||||: ||||:|:|| ||| ||| ||:|||||@LB@ GGGGGGA CACAUGUUUGU UCUCAG AUAAGGUAC CGC UCU UAUGGUUG@LB@3'-UUU...CUGAA GA UCUUCG AA AA-5'@LB@ | |@LB@ 60 2@LB@@LB@@LB@Energy -15.55 kcal/mol@LB@Hybridization Energy -46.252 kcal/mol@LB@Unfolding Energy - mRNA 13.1534 kcal/mol@LB@Unfolding Energy - sRNA 17.5467 kcal/mol@LB@@LB@Position - mRNA 132 -- 208@LB@Position - sRNA 3 -- 59@LB@Position Seed - mRNA 202 -- 208@LB@Position Seed - sRNA 3 -- 9@LB@ |
