49 |
0.0005477 |
0.03933 |
b2715 |
ascF |
-9.59 |
0.059292 |
173 -- 180 |
1 -- 8 |
cellobiose/arbutin/salicin-specific PTS enzymes IIB and IC components |
|
_____________172______181\n_____________|________|\n5'-UGC...ACAUC________UGAUA...GCU-3'\n______________UACCCUAC\n______________||||||||\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
174 -- 180 |
1 -- 7 |
-12.1729 kcal/mol |
0.486168 kcal/mol |
2.11603 kcal/mol |
172 181@LB@ | |@LB@5'-UGC...ACAUC UGAUA...GCU-3'@LB@ UACCCUAC@LB@ ||||||||@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -9.59 kcal/mol@LB@Hybridization Energy -12.1729 kcal/mol@LB@Unfolding Energy - mRNA 0.486168 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 173 -- 180@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 174 -- 180@LB@Position Seed - sRNA 1 -- 7@LB@ |
75 |
0.001328 |
0.06227 |
b1748 |
astC |
-8.39 |
0.124654 |
121 -- 127 |
1 -- 7 |
succinylornithine transaminase PLP-dependent |
|
_____________120_____128\n_____________|_______|\n5'-UCA...CACGA_______AAUCU...UGU-3'\n______________ACCCUGC\n______________|||||:|\n______________UGGGAUG\n3'-AUU...AGACA_______-5'\n_____________|______|\n_____________8______1\n |
121 -- 127 |
1 -- 7 |
-11.9071 kcal/mol |
1.50434 kcal/mol |
2.03949 kcal/mol |
120 128@LB@ | |@LB@5'-UCA...CACGA AAUCU...UGU-3'@LB@ ACCCUGC@LB@ |||||:|@LB@ UGGGAUG@LB@3'-AUU...AGACA -5'@LB@ | |@LB@ 8 1@LB@@LB@@LB@Energy -8.39 kcal/mol@LB@Hybridization Energy -11.9071 kcal/mol@LB@Unfolding Energy - mRNA 1.50434 kcal/mol@LB@Unfolding Energy - sRNA 2.03949 kcal/mol@LB@@LB@Position - mRNA 121 -- 127@LB@Position - sRNA 1 -- 7@LB@Position Seed - mRNA 121 -- 127@LB@Position Seed - sRNA 1 -- 7@LB@ |
157 |
0.006279 |
0.1407 |
b0312 |
betB |
-8.02 |
0.153308 |
1 -- 12 |
52 -- 63 |
betaine aldehyde dehydrogenase NAD-dependent |
|
______________1___________13\n______________|___________|\n___________5'-____________GAGCG...ACG-3'\n______________GUCGAAUCUGGU\n______________|:|:||||:|:|\n______________CGGUUUAGGCUA\n3'-AUU...UAAGU____________AUGCA...AUG-5'\n_____________|____________|\n_____________64___________51\n |
6 -- 12 |
52 -- 58 |
-15.0997 kcal/mol |
0.969406 kcal/mol |
6.13017 kcal/mol |
1 13@LB@ | |@LB@ 5'- GAGCG...ACG-3'@LB@ GUCGAAUCUGGU@LB@ |:|:||||:|:|@LB@ CGGUUUAGGCUA@LB@3'-AUU...UAAGU AUGCA...AUG-5'@LB@ | |@LB@ 64 51@LB@@LB@@LB@Energy -8.02 kcal/mol@LB@Hybridization Energy -15.0997 kcal/mol@LB@Unfolding Energy - mRNA 0.969406 kcal/mol@LB@Unfolding Energy - sRNA 6.13017 kcal/mol@LB@@LB@Position - mRNA 1 -- 12@LB@Position - sRNA 52 -- 63@LB@Position Seed - mRNA 6 -- 12@LB@Position Seed - sRNA 52 -- 58@LB@ |
54 |
0.0007615 |
0.04961 |
b0313 |
betI |
-7.44 |
0.209816 |
47 -- 68 |
32 -- 57 |
choline-inducible betIBA-betT divergent operon transcriptional repressor |
|
_____________46_________________________69\n_____________|__________________________|\n5'-CAG...CCUUU___C________U_____________UCAUC...CGC-3'\n______________UCC___UGC_UG__GUGAAAGGUCUG\n______________|||___|:|_||__||:|||||||||\n______________AGG___AUG_AC__CAUUUUCCAGAC\n3'-AUU...GGUUU___CUA___C__UU____________UUUCU...AUG-5'\n_____________|__________________________|\n_____________58_________________________31\n |
62 -- 68 |
32 -- 38 |
-22.1015 kcal/mol |
6.64828 kcal/mol |
7.92091 kcal/mol |
46 69@LB@ | |@LB@5'-CAG...CCUUU C U UCAUC...CGC-3'@LB@ UCC UGC UG GUGAAAGGUCUG@LB@ ||| |:| || ||:|||||||||@LB@ AGG AUG AC CAUUUUCCAGAC@LB@3'-AUU...GGUUU CUA C UU UUUCU...AUG-5'@LB@ | |@LB@ 58 31@LB@@LB@@LB@Energy -7.44 kcal/mol@LB@Hybridization Energy -22.1015 kcal/mol@LB@Unfolding Energy - mRNA 6.64828 kcal/mol@LB@Unfolding Energy - sRNA 7.92091 kcal/mol@LB@@LB@Position - mRNA 47 -- 68@LB@Position - sRNA 32 -- 57@LB@Position Seed - mRNA 62 -- 68@LB@Position Seed - sRNA 32 -- 38@LB@ |
23 |
0.0001777 |
0.02687 |
b0774 |
bioA |
-12.72 |
0.005870 |
209 -- 228 |
5 -- 24 |
7 8-diaminopelargonic acid synthase PLP-dependent |
|
_____________208___________________229\n_____________|_____________________|\n5'-ACG...ACAAC____G________________AACGC...AAG-3'\n______________GGAC_AUCUUGCCUUUG_ACC\n______________|:||_|||||:|||:||_|||\n______________CUUG_UAGAAUGGAGAC_UGG\n3'-AUU...UCUAU_________________A___GAUG-5'\n_____________|_____________________|\n_____________25____________________4\n |
219 -- 225 |
9 -- 15 |
-24.4474 kcal/mol |
3.74608 kcal/mol |
8.01095 kcal/mol |
208 229@LB@ | |@LB@5'-ACG...ACAAC G AACGC...AAG-3'@LB@ GGAC AUCUUGCCUUUG ACC@LB@ |:|| |||||:|||:|| |||@LB@ CUUG UAGAAUGGAGAC UGG@LB@3'-AUU...UCUAU A GAUG-5'@LB@ | |@LB@ 25 4@LB@@LB@@LB@Energy -12.72 kcal/mol@LB@Hybridization Energy -24.4474 kcal/mol@LB@Unfolding Energy - mRNA 3.74608 kcal/mol@LB@Unfolding Energy - sRNA 8.01095 kcal/mol@LB@@LB@Position - mRNA 209 -- 228@LB@Position - sRNA 5 -- 24@LB@Position Seed - mRNA 219 -- 225@LB@Position Seed - sRNA 9 -- 15@LB@ |
45 |
0.0004826 |
0.03773 |
b4133 |
cadC |
-9.27 |
0.072737 |
38 -- 110 |
5 -- 66 |
cadBA operon transcriptional activator |
|
_____________37______________________________________________________________________________111\n_____________|_______________________________________________________________________________|\n5'-GAU...GGUUC_____A______U_______AAUACUAUGUAAUCAA_____UUAU_______UAAAAAU__________A_________AAUAA...UAA-3'\n______________UCAGU_AAAUCC__UU_CGU________________GAAGU____GG_CUGG_______AACGUCUUGC_UUC___ACC\n______________||||:_||||||__||_|||________________|||||____||_|||:_______|||:||||:|_:||___|||\n______________AGUCG_UUUAGG__AA_GCA________________CUUCA____CC_GACU_______UUGUAGAAUG_GAG___UGG\n3'-AUU...UUAUA_____G______CU__U________________________UUUU__A____UUCUAUC______________ACA___GAUG-5'\n_____________|_______________________________________________________________________________|\n_____________67______________________________________________________________________________4\n |
97 -- 103 |
14 -- 20 |
-38.0459 kcal/mol |
10.2122 kcal/mol |
18.5819 kcal/mol |
37 111@LB@ | |@LB@5'-GAU...GGUUC A U AAUACUAUGUAAUCAA UUAU UAAAAAU A AAUAA...UAA-3'@LB@ UCAGU AAAUCC UU CGU GAAGU GG CUGG AACGUCUUGC UUC ACC@LB@ ||||: |||||| || ||| ||||| || |||: |||:||||:| :|| |||@LB@ AGUCG UUUAGG AA GCA CUUCA CC GACU UUGUAGAAUG GAG UGG@LB@3'-AUU...UUAUA G CU U UUUU A UUCUAUC ACA GAUG-5'@LB@ | |@LB@ 67 4@LB@@LB@@LB@Energy -9.27 kcal/mol@LB@Hybridization Energy -38.0459 kcal/mol@LB@Unfolding Energy - mRNA 10.2122 kcal/mol@LB@Unfolding Energy - sRNA 18.5819 kcal/mol@LB@@LB@Position - mRNA 38 -- 110@LB@Position - sRNA 5 -- 66@LB@Position Seed - mRNA 97 -- 103@LB@Position Seed - sRNA 14 -- 20@LB@ |
190 |
0.008456 |
0.1558 |
b0036 |
caiD |
-8.40 |
0.123663 |
110 -- 117 |
1 -- 8 |
carnitinyl-CoA dehydratase |
|
_____________109______118\n_____________|________|\n5'-UGG...GGAAC________CAGCU...AAA-3'\n______________UACCCUGC\n______________||||||:|\n______________AUGGGAUG\n3'-AUU...GAGAC________-5'\n_____________|_______|\n_____________9_______1\n |
111 -- 117 |
1 -- 7 |
-12.4513 kcal/mol |
1.95818 kcal/mol |
2.11603 kcal/mol |
109 118@LB@ | |@LB@5'-UGG...GGAAC CAGCU...AAA-3'@LB@ UACCCUGC@LB@ ||||||:|@LB@ AUGGGAUG@LB@3'-AUU...GAGAC -5'@LB@ | |@LB@ 9 1@LB@@LB@@LB@Energy -8.40 kcal/mol@LB@Hybridization Energy -12.4513 kcal/mol@LB@Unfolding Energy - mRNA 1.95818 kcal/mol@LB@Unfolding Energy - sRNA 2.11603 kcal/mol@LB@@LB@Position - mRNA 110 -- 117@LB@Position - sRNA 1 -- 8@LB@Position Seed - mRNA 111 -- 117@LB@Position Seed - sRNA 1 -- 7@LB@ |
128 |
0.004347 |
0.1195 |
b3690 |
cbrA |
-9.56 |
0.060736 |
197 -- 211 |
17 -- 31 |
colicin M resistance protein; FAD-binding protein putative oxidoreductase |
|
_____________196_____________212\n_____________|_______________|\n5'-CAG...AGUGA_______________CGACG...AAA-3'\n______________AAAGAUGGAACAUUU\n______________||||||:||||||:|\n______________UUUCUAUCUUGUAGA\n3'-AUU...CAGAC_______________AUGGA...AUG-5'\n_____________|_______________|\n_____________32______________16\n |
204 -- 210 |
18 -- 24 |
-17.0326 kcal/mol |
3.22818 kcal/mol |
4.26586 kcal/mol |
196 212@LB@ | |@LB@5'-CAG...AGUGA CGACG...AAA-3'@LB@ AAAGAUGGAACAUUU@LB@ ||||||:||||||:|@LB@ UUUCUAUCUUGUAGA@LB@3'-AUU...CAGAC AUGGA...AUG-5'@LB@ | |@LB@ 32 16@LB@@LB@@LB@Energy -9.56 kcal/mol@LB@Hybridization Energy -17.0326 kcal/mol@LB@Unfolding Energy - mRNA 3.22818 kcal/mol@LB@Unfolding Energy - sRNA 4.26586 kcal/mol@LB@@LB@Position - mRNA 197 -- 211@LB@Position - sRNA 17 -- 31@LB@Position Seed - mRNA 204 -- 210@LB@Position Seed - sRNA 18 -- 24@LB@ |
121 |
0.004045 |
0.1176 |
b1738 |
chbB |
-6.64 |
0.311906 |
2 -- 15 |
34 -- 50 |
N N'-diacetylchitobiose-specific enzyme IIB component of PTS |
|
_____________1_________________16\n_____________|_________________|\n__________5'-A_________________AUAAC...CGG-3'\n______________AUGUGAAG___AGGGUC\n______________|:||||||___|:||||\n______________UGCACUUC___UUCCAG\n3'-AUU...GCUAA________AUU______ACUUU...AUG-5'\n_____________|_________________|\n_____________51________________33\n |
3 -- 9 |
43 -- 49 |
-17.276 kcal/mol |
2.8636 kcal/mol |
7.69543 kcal/mol |
1 16@LB@ | |@LB@ 5'-A AUAAC...CGG-3'@LB@ AUGUGAAG AGGGUC@LB@ |:|||||| |:||||@LB@ UGCACUUC UUCCAG@LB@3'-AUU...GCUAA AUU ACUUU...AUG-5'@LB@ | |@LB@ 51 33@LB@@LB@@LB@Energy -6.64 kcal/mol@LB@Hybridization Energy -17.276 kcal/mol@LB@Unfolding Energy - mRNA 2.8636 kcal/mol@LB@Unfolding Energy - sRNA 7.69543 kcal/mol@LB@@LB@Position - mRNA 2 -- 15@LB@Position - sRNA 34 -- 50@LB@Position Seed - mRNA 3 -- 9@LB@Position Seed - sRNA 43 -- 49@LB@ |
47 |
0.0005047 |
0.03778 |
b1888 |
cheA |
-10.26 |
0.037926 |
179 -- 191 |
53 -- 66 |
fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein |
|
_____________178____________192\n_____________|______________|\n5'-GAU...UGCCA______________GGUGA...AAG-3'\n______________UCAGCCGAA_CCGA\n______________||||||:||_||||\n______________AGUCGGUUU_GGCU\n3'-AUU...UUAUA_________A____AAUGC...AUG-5'\n_____________|______________|\n_____________67_____________52\n |
181 -- 187 |
58 -- 64 |
-19.401 kcal/mol |
2.99348 kcal/mol |
6.16775 kcal/mol |
178 192@LB@ | |@LB@5'-GAU...UGCCA GGUGA...AAG-3'@LB@ UCAGCCGAA CCGA@LB@ ||||||:|| ||||@LB@ AGUCGGUUU GGCU@LB@3'-AUU...UUAUA A AAUGC...AUG-5'@LB@ | |@LB@ 67 52@LB@@LB@@LB@Energy -10.26 kcal/mol@LB@Hybridization Energy -19.401 kcal/mol@LB@Unfolding Energy - mRNA 2.99348 kcal/mol@LB@Unfolding Energy - sRNA 6.16775 kcal/mol@LB@@LB@Position - mRNA 179 -- 191@LB@Position - sRNA 53 -- 66@LB@Position Seed - mRNA 181 -- 187@LB@Position Seed - sRNA 58 -- 64@LB@ |